1P8SA

Structural and functional importance of first-shell metal ligands in the binuclear manganese cluster of arginase i.
Total Genus 101

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
314
structure length
314
Chain Sequence
KPIEIIGAPFSKGQPRGGVEKGPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPNDSPFQIVKNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHSMAIGSISGHARVHPDLCVIWVDAHTDINTPLTTSSGNLHGQPVAFLLKELKGKFPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYIIKTLGIKYFSMTEVDKLGIGKVMEETFSYLLGRKKRPIHLSFCVDGLDPVFTPATGTPVVGGLSYREGLYITEEIYKTGLLSGLDIMEVNPTLGKTPEEVTRTVNTAVALTLSCFGTKREGNHKPETDYL
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
O1 (13-15)S1 (7-13)TIV2 (63-66)TIV6 (135-138)TI1 (16-19)S8 (270-276)AH1 (27-31)S2 (46-52)3H2 (32-34)AH2 (36-41)AH9 (254-267)AH3 (70-90)TIV3 (64-67)EMPTYTI3 (131-134)TII2 (159-162)TIV4 (67-70)S3 (93-98)3H3 (101-103)AH4 (104-114)TIV11 (220-223)TI6 (162-165)AH8 (208-220)TI2 (115-118)S7 (227-232)S4 (119-123)TI7 (170-173)TI5 (139-142)S5 (174-179)TIV5 (124-127)TIV7 (140-143)AH5 (144-148)3H4 (150-152)TII1 (152-155)TIV9 (154-157)TIV13 (241-244)AH6 (184-193)S6 (196-199)AH7 (200-206)TI9 (237-240)AH10 (286-301)TII3 (248-251)TI13 (301-304)TI11 (279-282)TI12 (280-283)TI14 (302-305)TI15 (307-310)TII4 (313-316)3H1 (24-26)3H5 (233-235)TIV15 (283-286)TIV14 (244-247)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Rattus norvegicus
publication title Structural and functional importance of first-shell metal ligands in the binuclear manganese cluster of arginase I
pubmed doi rcsb
molecule keywords Arginase 1
total genus 101
structure length 314
sequence length 314
chains with identical sequence B, C
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2003-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 1p8sA00
3E8ZA 4CEVA 1HQHA 1T4TA 4IE2A 4GWDA 3NIPA 4Q42A 1ZPEA 1WOGA 2EF5A 4MYLA 1WOIA 3LP7A 1T5GA 5RLAA 3THEA 1TBLA 3DJ8A 1P8SA 4RHLA 3NIOA 4I06A 1D3VA 2AEBA 1TA1A 4G3HA 4IU1A 4Q41A 3NIQA 1GQ7A 4RLAA 3THJA 3LHLA 5HJAA 5CEVA 1TBHA 2PLLA 2EIVA 1RLAA 1PQ3A 4IU0A 2ZAVA 4MYFA 1WVAA 1P8PA 1TBJA 3MMRA 4Q3TA 1XFKA 4RHQA 1WOHA 4DZ4A 3SL0A 4Q40A 2PHAA 1HQXA 4IXUA 4IU4A 4Q3RA 1R1OA 2PHOA 1HQGA 4RHKA 1P8MA 3E8QA 1GQ6A 3MFVA 4Q3QA 2CEVA 4GSMA 1HQFA 1P8QA 1T4PA 3GMZA 1CEVA 4FCKA 4IU5A 4RHIA 1ZPGA 3MFWA 3E9BA 4Q3VA 2EF4A 4HZEA 3SL1A 3GN0A 4MYNA 4Q3SA 2A0MA 3E6KA 4IE3A 4IE1A 1WVBA 4MYKA 1T4SA 4ITYA 3E6VA 3LP4A 1T5FA 3SKKA 4GWCA 4Q3PA 4GSVA 3RLAA 3CEVA 1P8RA 3M1RA 4Q3RC 1T4RA 3TH7A 3MJLA 5HJ9A 3TF3A 4Q3UA 4MXRA 4HXQA 4RHJA 2RLAA 3SJTA 3KV2A 4RHMA 4IXVA 4FCIA 1HQ5A 4GSZA 3PZLA 4HWWA 1P8OA 3F80A 3THHA 1P8NA
chains in the Genus database with same CATH superfamily
5EFJD 3E8ZA 5EEMA 4CEVA 5G0GA 5EEIA 5G17A 1HQHA 1T4TA 4IE2A 4GWDA 5G1CA 3NIPA 4Q42A 1ZPEA 5EFNA 2VQOA 1WOGA 2EF5A 1C3RA 4BKXB 1T69A 2VQWG 4LY1A 4MYLA 1WOIA 3LP7A 4QA7A 1T5GA 5RLAA 3THEA 1TBLA 1T67A 4CBYA 5THSA 3DJ8A 2VCGA 4QA6A 1P8SA 5EF8A 5EEFA 2VQMA 3EZPA 4RHLA 3NIOA 4CBTA 4I06A 1D3VA 2AEBA 1TA1A 3EW8A 5G11A 5THVA 4G3HA 1T64A 4ZUMA 4IU1A 4Q41A 3NIQA 1GQ7A 4RLAA 3THJA 3LHLA 5HJAA 5EFKB 5CEVA 1ZZ3A 5DC6A 3EWFA 3MENA 1TBHA 1ZZ0A 4QA3A 5DC5A 2PLLA 3MZ6A 4BZ9A 2EIVA 1PQ3A 1RLAA 4IU0A 2ZAVA 5D1CA 4RN0A 2VQQA 5G0YA 3Q9FA 1C3SA 1WVAA 4MYFA 1P8PA 1TBJA 3MMRA 4Q3TA 1XFKA 4BZ5A 4RHQA 5FCWA 1WOHA 4DZ4A 3MZ3A 3SFFA 3SL0A 4Q40A 5EF7A 5G3WA 4ZUOA 2PHAA 5D1BA 3F0RA 1HQXA 2V5WA 1C3PA 4IXUA 4BZ6A 4IU4A 3Q9EA 4Q3RA 1R1OA 2PHOA 1HQGA 4RHKA 4ZUPA 1P8MA 3E8QA 4ZURA 1GQ6A 3MFVA 5G0JA 4Q3QA 2CEVA 4GSMA 5IX0A 5G12A 1HQFA 1P8QA 1T4PA 3GMZA 1CEVA 4FCKA 4IU5A 4RHIA 4A69A 1ZPGA 4QA2A 3MFWA 3E9BA 4CQFA 4LXZA 4ZUNA 3MZ7A 3MZ4A 4BZ8A 3EZTA 4Q3VA 3C0YA 4QA4A 5THTA 1VKGA 5G0HA 2EF4A 3Q9BA 4RN1A 4HZEA 3SL1A 3GN0A 4QA5A 3ZNSA 4BZ7A 5LI3A 2GH6A 5EFHA 4MYNA 3SFHA 4QA1A 4Q3SA 2A0MA 3E6KA 5ICNB 5G13A 4IE3A 4IE1A 5G1AA 5EFBD 5FUEA 1WVBA 4MYKA 5G0XA 3RQDA 1T4SA 4ZUQA 5EENA 4ITYA 3E6VA 3LP4A 1T5FA 5EEKA 3Q9CA 3SKKA 2V5XA 4GWCA 5DC7A 4Q3PA 4GSVA 3RLAA 3CEVA 5BWZA 1P8RA 3M1RA 5JI5A 4Q3RC 1T4RA 5G1BA 1W22A 2VQVA 3MJLA 5THUA 3TH7A 5HJ9A 3TF3A 4Q3UA 3C0ZA 1ZZ1A 4MXRA 4HXQA 4RHJA 2RLAA 5G10A 5G0IA 2VQJA 3MAXA 3SJTA 3KV2A 5A2SA 4RHMA 3C10A 4IXVA 4FCIA 5IWGA 5EFGA 1HQ5A 4GSZA 3F07A 3PZLA 4HWWA 1P8OA 3F06A 4RN2A 3F80A 3THHA 3ZNRA 4QA0A 5D1DA 1P8NA 5DC8A
chains in the Genus database with same CATH topology
3E8ZA 4CEVA 1HQHA 1T4TA 4IE2A 4GWDA 3NIPA 4Q42A 1ZPEA 1WOGA 2EF5A 4MYLA 1WOIA 3LP7A 1T5GA 5RLAA 3THEA 1TBLA 3DJ8A 1P8SA 4RHLA 3NIOA 4I06A 1D3VA 2AEBA 1TA1A 4G3HA 4IU1A 4Q41A 3NIQA 1GQ7A 4RLAA 3THJA 3LHLA 5HJAA 5CEVA 1TBHA 2PLLA 2EIVA 1RLAA 1PQ3A 4IU0A 2ZAVA 4MYFA 1WVAA 1P8PA 1TBJA 3MMRA 4Q3TA 1XFKA 4RHQA 1WOHA 4DZ4A 3SL0A 4Q40A 2PHAA 1HQXA 4IXUA 4IU4A 4Q3RA 1R1OA 2PHOA 1HQGA 4RHKA 1P8MA 3E8QA 1GQ6A 3MFVA 4Q3QA 2CEVA 4GSMA 1HQFA 1P8QA 1T4PA 3GMZA 1CEVA 4FCKA 4IU5A 4RHIA 1ZPGA 3MFWA 3E9BA 4Q3VA 2EF4A 4HZEA 3SL1A 3GN0A 4MYNA 4Q3SA 2A0MA 3E6KA 4IE3A 4IE1A 1WVBA 4MYKA 1T4SA 4ITYA 3E6VA 3LP4A 1T5FA 3SKKA 4GWCA 4Q3PA 4GSVA 3RLAA 3CEVA 1P8RA 3M1RA 4Q3RC 1T4RA 3TH7A 3MJLA 5HJ9A 3TF3A 4Q3UA 4MXRA 4HXQA 4RHJA 2RLAA 3SJTA 3KV2A 4RHMA 4IXVA 4FCIA 1HQ5A 4GSZA 3PZLA 4HWWA 1P8OA 3F80A 3THHA 1P8NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E8Z A;  4CEV A;  1HQH A;  1T4T A;  4IE2 A;  4GWD A;  3NIP A;  4Q42 A;  1ZPE A;  1WOG A;  2EF5 A;  4MYL A;  1WOI A;  3LP7 A;  1T5G A;  5RLA A;  3THE A;  1TBL A;  3DJ8 A;  1P8S A;  4RHL A;  3NIO A;  4I06 A;  1D3V A;  2AEB A;  1TA1 A;  4G3H A;  4IU1 A;  4Q41 A;  3NIQ A;  1GQ7 A;  4RLA A;  3THJ A;  3LHL A;  5HJA A;  5CEV A;  1TBH A;  2PLL A;  2EIV A;  1RLA A;  1PQ3 A;  4IU0 A;  2ZAV A;  4MYF A;  1WVA A;  1P8P A;  1TBJ A;  3MMR A;  4Q3T A;  1XFK A;  4RHQ A;  1WOH A;  4DZ4 A;  3SL0 A;  4Q40 A;  2PHA A;  1HQX A;  4IXU A;  4IU4 A;  4Q3R A;  1R1O A;  2PHO A;  1HQG A;  4RHK A;  1P8M A;  3E8Q A;  1GQ6 A;  3MFV A;  4Q3Q A;  2CEV A;  4GSM A;  1HQF A;  1P8Q A;  1T4P A;  3GMZ A;  1CEV A;  4FCK A;  4IU5 A;  4RHI A;  1ZPG A;  3MFW A;  3E9B A;  4Q3V A;  2EF4 A;  4HZE A;  3SL1 A;  3GN0 A;  4MYN A;  4Q3S A;  2A0M A;  3E6K A;  4IE3 A;  4IE1 A;  1WVB A;  4MYK A;  1T4S A;  4ITY A;  3E6V A;  3LP4 A;  1T5F A;  3SKK A;  4GWC A;  4Q3P A;  4GSV A;  3RLA A;  3CEV A;  1P8R A;  3M1R A;  4Q3R C;  1T4R A;  3TH7 A;  3MJL A;  5HJ9 A;  3TF3 A;  4Q3U A;  4MXR A;  4HXQ A;  4RHJ A;  2RLA A;  3SJT A;  3KV2 A;  4RHM A;  4IXV A;  4FCI A;  1HQ5 A;  4GSZ A;  3PZL A;  4HWW A;  1P8O A;  3F80 A;  3THH A;  1P8N A; 
#chains in the Genus database with same CATH topology
 5EFJ D;  3E8Z A;  5EEM A;  4CEV A;  5G0G A;  5EEI A;  5G17 A;  1HQH A;  1T4T A;  4IE2 A;  4GWD A;  5G1C A;  3NIP A;  4Q42 A;  1ZPE A;  5EFN A;  2VQO A;  1WOG A;  2EF5 A;  1C3R A;  4BKX B;  1T69 A;  2VQW G;  4LY1 A;  4MYL A;  1WOI A;  3LP7 A;  4QA7 A;  1T5G A;  5RLA A;  3THE A;  1TBL A;  1T67 A;  4CBY A;  5THS A;  3DJ8 A;  2VCG A;  4QA6 A;  1P8S A;  5EF8 A;  5EEF A;  2VQM A;  3EZP A;  4RHL A;  3NIO A;  4CBT A;  4I06 A;  1D3V A;  2AEB A;  1TA1 A;  3EW8 A;  5G11 A;  5THV A;  4G3H A;  1T64 A;  4ZUM A;  4IU1 A;  4Q41 A;  3NIQ A;  1GQ7 A;  4RLA A;  3THJ A;  3LHL A;  5HJA A;  5EFK B;  5CEV A;  1ZZ3 A;  5DC6 A;  3EWF A;  3MEN A;  1TBH A;  1ZZ0 A;  4QA3 A;  5DC5 A;  2PLL A;  3MZ6 A;  4BZ9 A;  2EIV A;  1PQ3 A;  1RLA A;  4IU0 A;  2ZAV A;  5D1C A;  4RN0 A;  2VQQ A;  5G0Y A;  3Q9F A;  1C3S A;  1WVA A;  4MYF A;  1P8P A;  1TBJ A;  3MMR A;  4Q3T A;  1XFK A;  4BZ5 A;  4RHQ A;  5FCW A;  1WOH A;  4DZ4 A;  3MZ3 A;  3SFF A;  3SL0 A;  4Q40 A;  5EF7 A;  5G3W A;  4ZUO A;  2PHA A;  5D1B A;  3F0R A;  1HQX A;  2V5W A;  1C3P A;  4IXU A;  4BZ6 A;  4IU4 A;  3Q9E A;  4Q3R A;  1R1O A;  2PHO A;  1HQG A;  4RHK A;  4ZUP A;  1P8M A;  3E8Q A;  4ZUR A;  1GQ6 A;  3MFV A;  5G0J A;  4Q3Q A;  2CEV A;  4GSM A;  5IX0 A;  5G12 A;  1HQF A;  1P8Q A;  1T4P A;  3GMZ A;  1CEV A;  4FCK A;  4IU5 A;  4RHI A;  4A69 A;  1ZPG A;  4QA2 A;  3MFW A;  3E9B A;  4CQF A;  4LXZ A;  4ZUN A;  3MZ7 A;  3MZ4 A;  4BZ8 A;  3EZT A;  4Q3V A;  3C0Y A;  4QA4 A;  5THT A;  1VKG A;  5G0H A;  2EF4 A;  3Q9B A;  4RN1 A;  4HZE A;  3SL1 A;  3GN0 A;  4QA5 A;  3ZNS A;  4BZ7 A;  5LI3 A;  2GH6 A;  5EFH A;  4MYN A;  3SFH A;  4QA1 A;  4Q3S A;  2A0M A;  3E6K A;  5ICN B;  5G13 A;  4IE3 A;  4IE1 A;  5G1A A;  5EFB D;  5FUE A;  1WVB A;  4MYK A;  5G0X A;  3RQD A;  1T4S A;  4ZUQ A;  5EEN A;  4ITY A;  3E6V A;  3LP4 A;  1T5F A;  5EEK A;  3Q9C A;  3SKK A;  2V5X A;  4GWC A;  5DC7 A;  4Q3P A;  4GSV A;  3RLA A;  3CEV A;  5BWZ A;  1P8R A;  3M1R A;  5JI5 A;  4Q3R C;  1T4R A;  5G1B A;  1W22 A;  2VQV A;  3MJL A;  5THU A;  3TH7 A;  5HJ9 A;  3TF3 A;  4Q3U A;  3C0Z A;  1ZZ1 A;  4MXR A;  4HXQ A;  4RHJ A;  2RLA A;  5G10 A;  5G0I A;  2VQJ A;  3MAX A;  3SJT A;  3KV2 A;  5A2S A;  4RHM A;  3C10 A;  4IXV A;  4FCI A;  5IWG A;  5EFG A;  1HQ5 A;  4GSZ A;  3F07 A;  3PZL A;  4HWW A;  1P8O A;  3F06 A;  4RN2 A;  3F80 A;  3THH A;  3ZNR A;  4QA0 A;  5D1D A;  1P8N A;  5DC8 A; 
#chains in the Genus database with same CATH homology
 3E8Z A;  4CEV A;  1HQH A;  1T4T A;  4IE2 A;  4GWD A;  3NIP A;  4Q42 A;  1ZPE A;  1WOG A;  2EF5 A;  4MYL A;  1WOI A;  3LP7 A;  1T5G A;  5RLA A;  3THE A;  1TBL A;  3DJ8 A;  1P8S A;  4RHL A;  3NIO A;  4I06 A;  1D3V A;  2AEB A;  1TA1 A;  4G3H A;  4IU1 A;  4Q41 A;  3NIQ A;  1GQ7 A;  4RLA A;  3THJ A;  3LHL A;  5HJA A;  5CEV A;  1TBH A;  2PLL A;  2EIV A;  1RLA A;  1PQ3 A;  4IU0 A;  2ZAV A;  4MYF A;  1WVA A;  1P8P A;  1TBJ A;  3MMR A;  4Q3T A;  1XFK A;  4RHQ A;  1WOH A;  4DZ4 A;  3SL0 A;  4Q40 A;  2PHA A;  1HQX A;  4IXU A;  4IU4 A;  4Q3R A;  1R1O A;  2PHO A;  1HQG A;  4RHK A;  1P8M A;  3E8Q A;  1GQ6 A;  3MFV A;  4Q3Q A;  2CEV A;  4GSM A;  1HQF A;  1P8Q A;  1T4P A;  3GMZ A;  1CEV A;  4FCK A;  4IU5 A;  4RHI A;  1ZPG A;  3MFW A;  3E9B A;  4Q3V A;  2EF4 A;  4HZE A;  3SL1 A;  3GN0 A;  4MYN A;  4Q3S A;  2A0M A;  3E6K A;  4IE3 A;  4IE1 A;  1WVB A;  4MYK A;  1T4S A;  4ITY A;  3E6V A;  3LP4 A;  1T5F A;  3SKK A;  4GWC A;  4Q3P A;  4GSV A;  3RLA A;  3CEV A;  1P8R A;  3M1R A;  4Q3R C;  1T4R A;  3TH7 A;  3MJL A;  5HJ9 A;  3TF3 A;  4Q3U A;  4MXR A;  4HXQ A;  4RHJ A;  2RLA A;  3SJT A;  3KV2 A;  4RHM A;  4IXV A;  4FCI A;  1HQ5 A;  4GSZ A;  3PZL A;  4HWW A;  1P8O A;  3F80 A;  3THH A;  1P8N A; 
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