1T5GA

Arginase-f2-l-arginine complex
Total Genus 115

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
314
structure length
314
Chain Sequence
KPIEIIGAPFSKGCPRGGVEKGPAALRKAGLVEKLKETEYNVRDHGDLAFVDVPNDSPFQIVKNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHSMAIGSISGHARVHPDLAVIWVDAHTDINTPLTTSSGNLAGQPVAFLLKELKGKFPDVPGFSWVTPAISAKDIVYIGLRDVDPGEHYIIKTLGIKYFSMTEVDKLGIGKVMEETFSYLLGRKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREGLYITEEIYKTGLLSGLDIMEVNPTLGKTPEEVTRTVNTAVALTLSAFGTKREGNHKPETDYL
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (7-13)EMPTYO1 (13-15)TVIII1 (17-20)TIV2 (63-66)TIV4 (135-138)TI1 (16-19)AH1 (27-33)S2 (46-52)AH2 (36-42)AH8 (254-267)AH3 (70-90)TII'1 (64-67)TI3 (131-134)AH4 (102-114)S3 (93-98)AH7 (200-220)TI2 (115-118)TIV7 (220-223)S4 (119-123)S7 (227-232)TVIII2 (124-127)TIV6 (176-179)TI4 (132-135)3H2 (140-142)AH5 (143-148)TI5 (149-152)TII1 (152-155)TVIII3 (154-157)S5 (174-177)S8 (270-276)3H3 (233-235)AH9 (286-304)TI10 (237-240)TIV11 (248-251)TI12 (279-282)TI13 (280-283)TI14 (307-310)TII3 (313-316)3H1 (24-26)TIV3 (67-70)TI8 (170-173)TI7 (162-165)S6 (197-198)TIV12 (283-286)AH6 (184-193)TIV10 (244-247)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Rattus norvegicus
publication title Inhibitor coordination interactions in the binuclear manganese cluster of arginase
pubmed doi rcsb
molecule keywords Arginase 1
total genus 115
structure length 314
sequence length 314
chains with identical sequence B, C
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2004-05-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 1t5gA00
1GQ6A 3LP4A 1D3VA 4RHIA 4Q3QA 2EF5A 3E8ZA 4Q40A 3DJ8A 4DZ4A 4IXVA 3CEVA 3THJA 4HXQA 2ZAVA 4RLAA 1HQHA 1P8OA 4RHJA 1WOHA 4MYLA 4Q3TA 1TBJA 4IXUA 4MYKA 3MJLA 4IU1A 3KV2A 1T4SA 3TH7A 1P8MA 1TBHA 4HZEA 4GWCA 2PHOA 3SKKA 4HWWA 3E6VA 1ZPGA 1WVAA 4FCKA 2A0MA 5CEVA 1WVBA 3MFVA 4MYFA 3F80A 4Q3PA 3E9BA 1T4PA 1XFKA 4IU4A 3SL0A 1HQFA 1T5GA 4I06A 1TBLA 3E6KA 3NIOA 1WOIA 3NIPA 2PHAA 3NIQA 4MYNA 4IE1A 3E8QA 1HQXA 2EIVA 1TA1A 3THHA 4MXRA 4GWDA 4Q42A 4FCIA 3RLAA 1P8RA 3MFWA 1P8PA 1P8QA 5HJAA 4RHKA 4IE2A 1T5FA 5RLAA 4RHMA 2RLAA 3GN0A 2AEBA 4RHLA 1HQGA 1ZPEA 1R1OA 3LP7A 3GMZA 3LHLA 4Q41A 2EF4A 1WOGA 1P8SA 1T4RA 4CEVA 4GSMA 4IU0A 4Q3VA 1GQ7A 4Q3RC 4IU5A 3MMRA 4GSVA 3TF3A 4G3HA 4GSZA 4ITYA 4RHQA 1HQ5A 3M1RA 1P8NA 4Q3UA 3SL1A 3PZLA 5HJ9A 4Q3RA 3SJTA 1T4TA 2CEVA 4IE3A 1RLAA 1PQ3A 1CEVA 4Q3SA 2PLLA 3THEA
chains in the Genus database with same CATH superfamily
1GQ6A 4BZ7A 1C3PA 3LP4A 5A2SA 1D3VA 4RHIA 5ICNB 4Q3QA 2EF5A 3E8ZA 5EEIA 3MENA 1ZZ3A 4Q40A 3DJ8A 5LI3A 2VQMA 4IXVA 4DZ4A 5BWZA 3Q9CA 4QA4A 5DC7A 3CEVA 4RN2A 4HXQA 3THJA 2ZAVA 4RLAA 1HQHA 3C10A 1P8OA 4RHJA 4QA0A 4BZ5A 5EEKA 5G0HA 4BKXB 1WOHA 4QA5A 4MYLA 4Q3TA 1TBJA 5EF7A 4IXUA 4MYKA 5DC5A 5JI5A 2VQQA 5G0XA 3MJLA 4ZUMA 5EEMA 4IU1A 4RN0A 3KV2A 1T4SA 5G11A 3TH7A 1P8MA 1TBHA 4HZEA 4GWCA 2PHOA 4ZUOA 3SKKA 4HWWA 3E6VA 1T64A 1ZPGA 1WVAA 4FCKA 4ZUNA 2A0MA 5CEVA 1WVBA 3MFVA 5G1CA 4MYFA 5DC8A 3F80A 4Q3PA 3E9BA 5G12A 5G17A 4QA7A 5EFNA 1T4PA 5EFJD 1XFKA 4QA3A 4CBTA 4IU4A 2VCGA 3SL0A 1HQFA 5D1DA 5THVA 2VQJA 1T5GA 5G10A 4I06A 4ZURA 5D1CA 1TBLA 3E6KA 3NIOA 3C0YA 3EWFA 1ZZ1A 3Q9EA 1WOIA 5EF8A 3NIPA 2PHAA 3ZNRA 3NIQA 4MYNA 3Q9FA 5EENA 5FUEA 4IE1A 2VQWG 3F07A 3F0RA 3E8QA 5EFHA 1HQXA 2EIVA 2V5WA 1TA1A 3RQDA 3THHA 5G0JA 4MXRA 5G0IA 1VKGA 2GH6A 5G0YA 4GWDA 4Q42A 4FCIA 5G13A 1P8RA 3RLAA 2V5XA 2VQVA 3F06A 3MFWA 1P8PA 1P8QA 5HJAA 4RHKA 3MZ3A 4IE2A 4RN1A 1T5FA 4LY1A 5RLAA 4RHMA 2RLAA 3GN0A 5G3WA 4BZ8A 2AEBA 3EZTA 3MAXA 1T67A 4QA1A 3C0ZA 3MZ6A 5EEFA 4RHLA 5G1BA 1HQGA 3MZ4A 5FCWA 4BZ9A 1ZPEA 1R1OA 3LP7A 3GMZA 3LHLA 4Q41A 2EF4A 1WOGA 1P8SA 4QA6A 5EFKB 1ZZ0A 1T4RA 5IWGA 5G0GA 4GSMA 4BZ6A 4CEVA 4ZUPA 4IU0A 4Q3VA 1GQ7A 3SFFA 4Q3RC 4IU5A 4ZUQA 3ZNSA 3MMRA 4GSVA 5G1AA 4G3HA 4GSZA 3Q9BA 3TF3A 5D1BA 1C3SA 3EZPA 4ITYA 4RHQA 1HQ5A 5THSA 3M1RA 5EFBD 4QA2A 1P8NA 4Q3UA 5DC6A 1T69A 3SL1A 1C3RA 3PZLA 1W22A 5HJ9A 4CBYA 4Q3RA 3SJTA 2VQOA 1T4TA 2CEVA 5EFGA 3MZ7A 1RLAA 4IE3A 1CEVA 1PQ3A 5THTA 4A69A 4LXZA 3EW8A 4Q3SA 5IX0A 3SFHA 5THUA 4CQFA 2PLLA 3THEA
chains in the Genus database with same CATH topology
1GQ6A 3LP4A 1D3VA 4RHIA 4Q3QA 2EF5A 3E8ZA 4Q40A 3DJ8A 4DZ4A 4IXVA 3CEVA 3THJA 4HXQA 2ZAVA 4RLAA 1HQHA 1P8OA 4RHJA 1WOHA 4MYLA 4Q3TA 1TBJA 4IXUA 4MYKA 3MJLA 4IU1A 3KV2A 1T4SA 3TH7A 1P8MA 1TBHA 4HZEA 4GWCA 2PHOA 3SKKA 4HWWA 3E6VA 1ZPGA 1WVAA 4FCKA 2A0MA 5CEVA 1WVBA 3MFVA 4MYFA 3F80A 4Q3PA 3E9BA 1T4PA 1XFKA 4IU4A 3SL0A 1HQFA 1T5GA 4I06A 1TBLA 3E6KA 3NIOA 1WOIA 3NIPA 2PHAA 3NIQA 4MYNA 4IE1A 3E8QA 1HQXA 2EIVA 1TA1A 3THHA 4MXRA 4GWDA 4Q42A 4FCIA 3RLAA 1P8RA 3MFWA 1P8PA 1P8QA 5HJAA 4RHKA 4IE2A 1T5FA 5RLAA 4RHMA 2RLAA 3GN0A 2AEBA 4RHLA 1HQGA 1ZPEA 1R1OA 3LP7A 3GMZA 3LHLA 4Q41A 2EF4A 1WOGA 1P8SA 1T4RA 4CEVA 4GSMA 4IU0A 4Q3VA 1GQ7A 4Q3RC 4IU5A 3MMRA 4GSVA 3TF3A 4G3HA 4GSZA 4ITYA 4RHQA 1HQ5A 3M1RA 1P8NA 4Q3UA 3SL1A 3PZLA 5HJ9A 4Q3RA 3SJTA 1T4TA 2CEVA 4IE3A 1RLAA 1PQ3A 1CEVA 4Q3SA 2PLLA 3THEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GQ6 A;  3LP4 A;  1D3V A;  4RHI A;  4Q3Q A;  2EF5 A;  3E8Z A;  4Q40 A;  3DJ8 A;  4DZ4 A;  4IXV A;  3CEV A;  3THJ A;  4HXQ A;  2ZAV A;  4RLA A;  1HQH A;  1P8O A;  4RHJ A;  1WOH A;  4MYL A;  4Q3T A;  1TBJ A;  4IXU A;  4MYK A;  3MJL A;  4IU1 A;  3KV2 A;  1T4S A;  3TH7 A;  1P8M A;  1TBH A;  4HZE A;  4GWC A;  2PHO A;  3SKK A;  4HWW A;  3E6V A;  1ZPG A;  1WVA A;  4FCK A;  2A0M A;  5CEV A;  1WVB A;  3MFV A;  4MYF A;  3F80 A;  4Q3P A;  3E9B A;  1T4P A;  1XFK A;  4IU4 A;  3SL0 A;  1HQF A;  1T5G A;  4I06 A;  1TBL A;  3E6K A;  3NIO A;  1WOI A;  3NIP A;  2PHA A;  3NIQ A;  4MYN A;  4IE1 A;  3E8Q A;  1HQX A;  2EIV A;  1TA1 A;  3THH A;  4MXR A;  4GWD A;  4Q42 A;  4FCI A;  3RLA A;  1P8R A;  3MFW A;  1P8P A;  1P8Q A;  5HJA A;  4RHK A;  4IE2 A;  1T5F A;  5RLA A;  4RHM A;  2RLA A;  3GN0 A;  2AEB A;  4RHL A;  1HQG A;  1ZPE A;  1R1O A;  3LP7 A;  3GMZ A;  3LHL A;  4Q41 A;  2EF4 A;  1WOG A;  1P8S A;  1T4R A;  4CEV A;  4GSM A;  4IU0 A;  4Q3V A;  1GQ7 A;  4Q3R C;  4IU5 A;  3MMR A;  4GSV A;  3TF3 A;  4G3H A;  4GSZ A;  4ITY A;  4RHQ A;  1HQ5 A;  3M1R A;  1P8N A;  4Q3U A;  3SL1 A;  3PZL A;  5HJ9 A;  4Q3R A;  3SJT A;  1T4T A;  2CEV A;  4IE3 A;  1RLA A;  1PQ3 A;  1CEV A;  4Q3S A;  2PLL A;  3THE A; 
#chains in the Genus database with same CATH topology
 1GQ6 A;  4BZ7 A;  1C3P A;  3LP4 A;  5A2S A;  1D3V A;  4RHI A;  5ICN B;  4Q3Q A;  2EF5 A;  3E8Z A;  5EEI A;  3MEN A;  1ZZ3 A;  4Q40 A;  3DJ8 A;  5LI3 A;  2VQM A;  4IXV A;  4DZ4 A;  5BWZ A;  3Q9C A;  4QA4 A;  5DC7 A;  3CEV A;  4RN2 A;  4HXQ A;  3THJ A;  2ZAV A;  4RLA A;  1HQH A;  3C10 A;  1P8O A;  4RHJ A;  4QA0 A;  4BZ5 A;  5EEK A;  5G0H A;  4BKX B;  1WOH A;  4QA5 A;  4MYL A;  4Q3T A;  1TBJ A;  5EF7 A;  4IXU A;  4MYK A;  5DC5 A;  5JI5 A;  2VQQ A;  5G0X A;  3MJL A;  4ZUM A;  5EEM A;  4IU1 A;  4RN0 A;  3KV2 A;  1T4S A;  5G11 A;  3TH7 A;  1P8M A;  1TBH A;  4HZE A;  4GWC A;  2PHO A;  4ZUO A;  3SKK A;  4HWW A;  3E6V A;  1T64 A;  1ZPG A;  1WVA A;  4FCK A;  4ZUN A;  2A0M A;  5CEV A;  1WVB A;  3MFV A;  5G1C A;  4MYF A;  5DC8 A;  3F80 A;  4Q3P A;  3E9B A;  5G12 A;  5G17 A;  4QA7 A;  5EFN A;  1T4P A;  5EFJ D;  1XFK A;  4QA3 A;  4CBT A;  4IU4 A;  2VCG A;  3SL0 A;  1HQF A;  5D1D A;  5THV A;  2VQJ A;  1T5G A;  5G10 A;  4I06 A;  4ZUR A;  5D1C A;  1TBL A;  3E6K A;  3NIO A;  3C0Y A;  3EWF A;  1ZZ1 A;  3Q9E A;  1WOI A;  5EF8 A;  3NIP A;  2PHA A;  3ZNR A;  3NIQ A;  4MYN A;  3Q9F A;  5EEN A;  5FUE A;  4IE1 A;  2VQW G;  3F07 A;  3F0R A;  3E8Q A;  5EFH A;  1HQX A;  2EIV A;  2V5W A;  1TA1 A;  3RQD A;  3THH A;  5G0J A;  4MXR A;  5G0I A;  1VKG A;  2GH6 A;  5G0Y A;  4GWD A;  4Q42 A;  4FCI A;  5G13 A;  1P8R A;  3RLA A;  2V5X A;  2VQV A;  3F06 A;  3MFW A;  1P8P A;  1P8Q A;  5HJA A;  4RHK A;  3MZ3 A;  4IE2 A;  4RN1 A;  1T5F A;  4LY1 A;  5RLA A;  4RHM A;  2RLA A;  3GN0 A;  5G3W A;  4BZ8 A;  2AEB A;  3EZT A;  3MAX A;  1T67 A;  4QA1 A;  3C0Z A;  3MZ6 A;  5EEF A;  4RHL A;  5G1B A;  1HQG A;  3MZ4 A;  5FCW A;  4BZ9 A;  1ZPE A;  1R1O A;  3LP7 A;  3GMZ A;  3LHL A;  4Q41 A;  2EF4 A;  1WOG A;  1P8S A;  4QA6 A;  5EFK B;  1ZZ0 A;  1T4R A;  5IWG A;  5G0G A;  4GSM A;  4BZ6 A;  4CEV A;  4ZUP A;  4IU0 A;  4Q3V A;  1GQ7 A;  3SFF A;  4Q3R C;  4IU5 A;  4ZUQ A;  3ZNS A;  3MMR A;  4GSV A;  5G1A A;  4G3H A;  4GSZ A;  3Q9B A;  3TF3 A;  5D1B A;  1C3S A;  3EZP A;  4ITY A;  4RHQ A;  1HQ5 A;  5THS A;  3M1R A;  5EFB D;  4QA2 A;  1P8N A;  4Q3U A;  5DC6 A;  1T69 A;  3SL1 A;  1C3R A;  3PZL A;  1W22 A;  5HJ9 A;  4CBY A;  4Q3R A;  3SJT A;  2VQO A;  1T4T A;  2CEV A;  5EFG A;  3MZ7 A;  1RLA A;  4IE3 A;  1CEV A;  1PQ3 A;  5THT A;  4A69 A;  4LXZ A;  3EW8 A;  4Q3S A;  5IX0 A;  3SFH A;  5THU A;  4CQF A;  2PLL A;  3THE A; 
#chains in the Genus database with same CATH homology
 1GQ6 A;  3LP4 A;  1D3V A;  4RHI A;  4Q3Q A;  2EF5 A;  3E8Z A;  4Q40 A;  3DJ8 A;  4DZ4 A;  4IXV A;  3CEV A;  3THJ A;  4HXQ A;  2ZAV A;  4RLA A;  1HQH A;  1P8O A;  4RHJ A;  1WOH A;  4MYL A;  4Q3T A;  1TBJ A;  4IXU A;  4MYK A;  3MJL A;  4IU1 A;  3KV2 A;  1T4S A;  3TH7 A;  1P8M A;  1TBH A;  4HZE A;  4GWC A;  2PHO A;  3SKK A;  4HWW A;  3E6V A;  1ZPG A;  1WVA A;  4FCK A;  2A0M A;  5CEV A;  1WVB A;  3MFV A;  4MYF A;  3F80 A;  4Q3P A;  3E9B A;  1T4P A;  1XFK A;  4IU4 A;  3SL0 A;  1HQF A;  1T5G A;  4I06 A;  1TBL A;  3E6K A;  3NIO A;  1WOI A;  3NIP A;  2PHA A;  3NIQ A;  4MYN A;  4IE1 A;  3E8Q A;  1HQX A;  2EIV A;  1TA1 A;  3THH A;  4MXR A;  4GWD A;  4Q42 A;  4FCI A;  3RLA A;  1P8R A;  3MFW A;  1P8P A;  1P8Q A;  5HJA A;  4RHK A;  4IE2 A;  1T5F A;  5RLA A;  4RHM A;  2RLA A;  3GN0 A;  2AEB A;  4RHL A;  1HQG A;  1ZPE A;  1R1O A;  3LP7 A;  3GMZ A;  3LHL A;  4Q41 A;  2EF4 A;  1WOG A;  1P8S A;  1T4R A;  4CEV A;  4GSM A;  4IU0 A;  4Q3V A;  1GQ7 A;  4Q3R C;  4IU5 A;  3MMR A;  4GSV A;  3TF3 A;  4G3H A;  4GSZ A;  4ITY A;  4RHQ A;  1HQ5 A;  3M1R A;  1P8N A;  4Q3U A;  3SL1 A;  3PZL A;  5HJ9 A;  4Q3R A;  3SJT A;  1T4T A;  2CEV A;  4IE3 A;  1RLA A;  1PQ3 A;  1CEV A;  4Q3S A;  2PLL A;  3THE A; 
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