1WVBA

Crystal structure of human arginase i: the mutant e256q
Total Genus 102

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
102
sequence length
309
structure length
309
Chain Sequence
SRTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKEQECDVKDYGDLPFADIPNDSPFQIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYRQGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAITLACFGLAREGNHK
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (36-42)EMPTYS1 (7-12)TI1 (88-91)O1 (13-15)TIV3 (63-66)S3 (93-97)TIV6 (135-138)TIV1 (16-19)3H1 (23-26)TIV2 (17-20)AH3 (70-88)S2 (46-52)TII'1 (64-67)TIV4 (67-70)TVIII1 (58-61)TI3 (131-134)TIV5 (132-135)AH8 (254-267)S4 (119-123)AH4 (102-114)S8 (270-276)TI6 (162-165)TIV11 (220-223)TI2 (115-118)TVIII2 (124-127)S5 (174-179)TI4 (139-142)TI5 (140-143)AH5 (144-148)3H2 (150-152)TII1 (152-155)AH6 (184-193)TI7 (170-173)S6 (196-199)S7 (227-232)TIV14 (241-244)AH7 (200-220)TII3 (248-251)3H3 (233-235)TI8 (237-240)TVIII3 (244-247)AH9 (286-304)3H4 (280-282)AH1 (27-34)TII2 (159-162)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Homo sapiens
publication title Crystal structure of human arginase I: the mutant E256Q
rcsb
molecule keywords Arginase 1
total genus 102
structure length 309
sequence length 309
chains with identical sequence B
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2004-12-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 1wvbA00
3TH7A 2CEVA 1RLAA 1P8NA 4IE2A 5RLAA 3THHA 3LP4A 2EIVA 4Q3UA 1HQFA 4Q40A 4ITYA 4RHJA 3CEVA 1R1OA 1CEVA 4Q41A 2AEBA 1T4PA 3GN0A 4DZ4A 1TBLA 3MFVA 3E8QA 3MFWA 2PLLA 1WOHA 4GSZA 1WOGA 5HJAA 3E6VA 4GWCA 1T4TA 3RLAA 2ZAVA 4RHLA 4RHIA 4CEVA 4Q42A 1P8OA 4MYFA 4MYLA 4IU1A 1P8PA 4RHKA 3MMRA 5CEVA 1P8QA 1HQGA 1WVAA 4IU5A 4MYNA 4RLAA 3MJLA 3F80A 3NIOA 1T4RA 3TF3A 2A0MA 1T5GA 1D3VA 4I06A 3KV2A 4HWWA 1T5FA 1TA1A 4IXVA 1ZPGA 4RHMA 1ZPEA 5HJ9A 3SKKA 4MYKA 3E8ZA 3THJA 4GSVA 1GQ7A 1T4SA 4IU0A 4RHQA 3PZLA 4IE1A 3M1RA 4Q3VA 3E6KA 1P8MA 1GQ6A 4Q3QA 2RLAA 3SJTA 4FCKA 2PHOA 3SL0A 2EF5A 1HQHA 4Q3PA 4G3HA 4IU4A 3NIQA 4IE3A 1PQ3A 3GMZA 1P8SA 1WVBA 2EF4A 4Q3SA 1HQXA 3LHLA 1WOIA 4IXUA 1P8RA 4GSMA 3DJ8A 4GWDA 1TBJA 4MXRA 1XFKA 4Q3RA 4FCIA 4HZEA 1HQ5A 3SL1A 4Q3TA 3E9BA 4HXQA 3LP7A 4Q3RC 3NIPA 1TBHA 3THEA 2PHAA
chains in the Genus database with same CATH superfamily
2VQWG 5DC7A 5D1DA 3TH7A 2CEVA 1C3PA 4ZUPA 3ZNSA 5THUA 1RLAA 5G17A 5G13A 5G1BA 1P8NA 1W22A 3MZ3A 4IE2A 4ZUQA 5RLAA 5THVA 1C3RA 3THHA 4QA4A 3LP4A 2EIVA 4Q3UA 1HQFA 4Q40A 4ITYA 4RHJA 5EF8A 4BZ8A 3CEVA 4CBYA 5G1AA 1R1OA 1CEVA 5G0IA 3MENA 3MZ4A 4Q41A 2AEBA 1T4PA 1ZZ1A 3GN0A 5DC5A 4ZURA 1T64A 4DZ4A 5EFHA 1TBLA 4RN0A 3MFVA 5D1CA 3E8QA 2VQOA 3Q9EA 4LXZA 2VCGA 3MZ7A 3MFWA 2PLLA 1WOHA 3F07A 4GSZA 5EEFA 1WOGA 5HJAA 3E6VA 4GWCA 1T4TA 3RLAA 4BZ6A 4BZ9A 2ZAVA 5IX0A 1T67A 4RHLA 3C0ZA 5G0JA 4RHIA 4CEVA 4Q42A 1P8OA 4MYFA 4MYLA 1C3SA 4IU1A 1P8PA 4ZUNA 4RHKA 3MMRA 5THSA 5CEVA 1P8QA 5THTA 1HQGA 5EEIA 3C0YA 1WVAA 5EFBD 5DC6A 5G0GA 4ZUMA 4IU5A 4MYNA 4RLAA 3MJLA 3F80A 3NIOA 1T4RA 3EZPA 3MAXA 3TF3A 3Q9BA 2A0MA 1T5GA 1D3VA 3EW8A 4QA2A 1ZZ3A 5EFKB 5G0XA 3F0RA 4I06A 3KV2A 4HWWA 1T5FA 4ZUOA 1TA1A 4IXVA 5D1BA 5ICNB 1ZPGA 4RHMA 4LY1A 3F06A 1ZPEA 5HJ9A 2V5WA 4MYKA 3MZ6A 5EFJD 5FUEA 1T69A 3SKKA 3ZNRA 5A2SA 2VQQA 3E8ZA 3THJA 4GSVA 1GQ7A 1T4SA 4IU0A 5BWZA 4RHQA 4BZ7A 5G0HA 4QA1A 5EF7A 5EEMA 4QA5A 5EENA 5G3WA 4A69A 3PZLA 5G0YA 4QA7A 4IE1A 3C10A 3M1RA 4Q3VA 2VQVA 3E6KA 5G1CA 5G11A 4QA3A 1P8MA 3EWFA 1GQ6A 4Q3QA 2RLAA 3SJTA 5IWGA 4FCKA 2VQMA 5G12A 2PHOA 3SL0A 3Q9CA 3SFHA 1ZZ0A 2EF5A 1HQHA 4Q3PA 5EFNA 4CQFA 4G3HA 4IU4A 2V5XA 3NIQA 5G10A 4IE3A 4QA6A 4RN2A 3RQDA 5JI5A 1PQ3A 2GH6A 3GMZA 1P8SA 4BKXB 5DC8A 1WVBA 2EF4A 4Q3SA 1HQXA 3LHLA 1WOIA 4IXUA 1P8RA 4GSMA 3DJ8A 4GWDA 1TBJA 4MXRA 5LI3A 1XFKA 3Q9FA 5EFGA 4CBTA 3SFFA 4QA0A 4Q3RA 4FCIA 4HZEA 4RN1A 5EEKA 1HQ5A 2VQJA 3SL1A 4Q3TA 3E9BA 4HXQA 3LP7A 4BZ5A 1VKGA 5FCWA 4Q3RC 3NIPA 1TBHA 3EZTA 3THEA 2PHAA
chains in the Genus database with same CATH topology
3TH7A 2CEVA 1RLAA 1P8NA 4IE2A 5RLAA 3THHA 3LP4A 2EIVA 4Q3UA 1HQFA 4Q40A 4ITYA 4RHJA 3CEVA 1R1OA 1CEVA 4Q41A 2AEBA 1T4PA 3GN0A 4DZ4A 1TBLA 3MFVA 3E8QA 3MFWA 2PLLA 1WOHA 4GSZA 1WOGA 5HJAA 3E6VA 4GWCA 1T4TA 3RLAA 2ZAVA 4RHLA 4RHIA 4CEVA 4Q42A 1P8OA 4MYFA 4MYLA 4IU1A 1P8PA 4RHKA 3MMRA 5CEVA 1P8QA 1HQGA 1WVAA 4IU5A 4MYNA 4RLAA 3MJLA 3F80A 3NIOA 1T4RA 3TF3A 2A0MA 1T5GA 1D3VA 4I06A 3KV2A 4HWWA 1T5FA 1TA1A 4IXVA 1ZPGA 4RHMA 1ZPEA 5HJ9A 3SKKA 4MYKA 3E8ZA 3THJA 4GSVA 1GQ7A 1T4SA 4IU0A 4RHQA 3PZLA 4IE1A 3M1RA 4Q3VA 3E6KA 1P8MA 1GQ6A 4Q3QA 2RLAA 3SJTA 4FCKA 2PHOA 3SL0A 2EF5A 1HQHA 4Q3PA 4G3HA 4IU4A 3NIQA 4IE3A 1PQ3A 3GMZA 1P8SA 1WVBA 2EF4A 4Q3SA 1HQXA 3LHLA 1WOIA 4IXUA 1P8RA 4GSMA 3DJ8A 4GWDA 1TBJA 4MXRA 1XFKA 4Q3RA 4FCIA 4HZEA 1HQ5A 3SL1A 4Q3TA 3E9BA 4HXQA 3LP7A 4Q3RC 3NIPA 1TBHA 3THEA 2PHAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TH7 A;  2CEV A;  1RLA A;  1P8N A;  4IE2 A;  5RLA A;  3THH A;  3LP4 A;  2EIV A;  4Q3U A;  1HQF A;  4Q40 A;  4ITY A;  4RHJ A;  3CEV A;  1R1O A;  1CEV A;  4Q41 A;  2AEB A;  1T4P A;  3GN0 A;  4DZ4 A;  1TBL A;  3MFV A;  3E8Q A;  3MFW A;  2PLL A;  1WOH A;  4GSZ A;  1WOG A;  5HJA A;  3E6V A;  4GWC A;  1T4T A;  3RLA A;  2ZAV A;  4RHL A;  4RHI A;  4CEV A;  4Q42 A;  1P8O A;  4MYF A;  4MYL A;  4IU1 A;  1P8P A;  4RHK A;  3MMR A;  5CEV A;  1P8Q A;  1HQG A;  1WVA A;  4IU5 A;  4MYN A;  4RLA A;  3MJL A;  3F80 A;  3NIO A;  1T4R A;  3TF3 A;  2A0M A;  1T5G A;  1D3V A;  4I06 A;  3KV2 A;  4HWW A;  1T5F A;  1TA1 A;  4IXV A;  1ZPG A;  4RHM A;  1ZPE A;  5HJ9 A;  3SKK A;  4MYK A;  3E8Z A;  3THJ A;  4GSV A;  1GQ7 A;  1T4S A;  4IU0 A;  4RHQ A;  3PZL A;  4IE1 A;  3M1R A;  4Q3V A;  3E6K A;  1P8M A;  1GQ6 A;  4Q3Q A;  2RLA A;  3SJT A;  4FCK A;  2PHO A;  3SL0 A;  2EF5 A;  1HQH A;  4Q3P A;  4G3H A;  4IU4 A;  3NIQ A;  4IE3 A;  1PQ3 A;  3GMZ A;  1P8S A;  1WVB A;  2EF4 A;  4Q3S A;  1HQX A;  3LHL A;  1WOI A;  4IXU A;  1P8R A;  4GSM A;  3DJ8 A;  4GWD A;  1TBJ A;  4MXR A;  1XFK A;  4Q3R A;  4FCI A;  4HZE A;  1HQ5 A;  3SL1 A;  4Q3T A;  3E9B A;  4HXQ A;  3LP7 A;  4Q3R C;  3NIP A;  1TBH A;  3THE A;  2PHA A; 
#chains in the Genus database with same CATH topology
 2VQW G;  5DC7 A;  5D1D A;  3TH7 A;  2CEV A;  1C3P A;  4ZUP A;  3ZNS A;  5THU A;  1RLA A;  5G17 A;  5G13 A;  5G1B A;  1P8N A;  1W22 A;  3MZ3 A;  4IE2 A;  4ZUQ A;  5RLA A;  5THV A;  1C3R A;  3THH A;  4QA4 A;  3LP4 A;  2EIV A;  4Q3U A;  1HQF A;  4Q40 A;  4ITY A;  4RHJ A;  5EF8 A;  4BZ8 A;  3CEV A;  4CBY A;  5G1A A;  1R1O A;  1CEV A;  5G0I A;  3MEN A;  3MZ4 A;  4Q41 A;  2AEB A;  1T4P A;  1ZZ1 A;  3GN0 A;  5DC5 A;  4ZUR A;  1T64 A;  4DZ4 A;  5EFH A;  1TBL A;  4RN0 A;  3MFV A;  5D1C A;  3E8Q A;  2VQO A;  3Q9E A;  4LXZ A;  2VCG A;  3MZ7 A;  3MFW A;  2PLL A;  1WOH A;  3F07 A;  4GSZ A;  5EEF A;  1WOG A;  5HJA A;  3E6V A;  4GWC A;  1T4T A;  3RLA A;  4BZ6 A;  4BZ9 A;  2ZAV A;  5IX0 A;  1T67 A;  4RHL A;  3C0Z A;  5G0J A;  4RHI A;  4CEV A;  4Q42 A;  1P8O A;  4MYF A;  4MYL A;  1C3S A;  4IU1 A;  1P8P A;  4ZUN A;  4RHK A;  3MMR A;  5THS A;  5CEV A;  1P8Q A;  5THT A;  1HQG A;  5EEI A;  3C0Y A;  1WVA A;  5EFB D;  5DC6 A;  5G0G A;  4ZUM A;  4IU5 A;  4MYN A;  4RLA A;  3MJL A;  3F80 A;  3NIO A;  1T4R A;  3EZP A;  3MAX A;  3TF3 A;  3Q9B A;  2A0M A;  1T5G A;  1D3V A;  3EW8 A;  4QA2 A;  1ZZ3 A;  5EFK B;  5G0X A;  3F0R A;  4I06 A;  3KV2 A;  4HWW A;  1T5F A;  4ZUO A;  1TA1 A;  4IXV A;  5D1B A;  5ICN B;  1ZPG A;  4RHM A;  4LY1 A;  3F06 A;  1ZPE A;  5HJ9 A;  2V5W A;  4MYK A;  3MZ6 A;  5EFJ D;  5FUE A;  1T69 A;  3SKK A;  3ZNR A;  5A2S A;  2VQQ A;  3E8Z A;  3THJ A;  4GSV A;  1GQ7 A;  1T4S A;  4IU0 A;  5BWZ A;  4RHQ A;  4BZ7 A;  5G0H A;  4QA1 A;  5EF7 A;  5EEM A;  4QA5 A;  5EEN A;  5G3W A;  4A69 A;  3PZL A;  5G0Y A;  4QA7 A;  4IE1 A;  3C10 A;  3M1R A;  4Q3V A;  2VQV A;  3E6K A;  5G1C A;  5G11 A;  4QA3 A;  1P8M A;  3EWF A;  1GQ6 A;  4Q3Q A;  2RLA A;  3SJT A;  5IWG A;  4FCK A;  2VQM A;  5G12 A;  2PHO A;  3SL0 A;  3Q9C A;  3SFH A;  1ZZ0 A;  2EF5 A;  1HQH A;  4Q3P A;  5EFN A;  4CQF A;  4G3H A;  4IU4 A;  2V5X A;  3NIQ A;  5G10 A;  4IE3 A;  4QA6 A;  4RN2 A;  3RQD A;  5JI5 A;  1PQ3 A;  2GH6 A;  3GMZ A;  1P8S A;  4BKX B;  5DC8 A;  1WVB A;  2EF4 A;  4Q3S A;  1HQX A;  3LHL A;  1WOI A;  4IXU A;  1P8R A;  4GSM A;  3DJ8 A;  4GWD A;  1TBJ A;  4MXR A;  5LI3 A;  1XFK A;  3Q9F A;  5EFG A;  4CBT A;  3SFF A;  4QA0 A;  4Q3R A;  4FCI A;  4HZE A;  4RN1 A;  5EEK A;  1HQ5 A;  2VQJ A;  3SL1 A;  4Q3T A;  3E9B A;  4HXQ A;  3LP7 A;  4BZ5 A;  1VKG A;  5FCW A;  4Q3R C;  3NIP A;  1TBH A;  3EZT A;  3THE A;  2PHA A; 
#chains in the Genus database with same CATH homology
 3TH7 A;  2CEV A;  1RLA A;  1P8N A;  4IE2 A;  5RLA A;  3THH A;  3LP4 A;  2EIV A;  4Q3U A;  1HQF A;  4Q40 A;  4ITY A;  4RHJ A;  3CEV A;  1R1O A;  1CEV A;  4Q41 A;  2AEB A;  1T4P A;  3GN0 A;  4DZ4 A;  1TBL A;  3MFV A;  3E8Q A;  3MFW A;  2PLL A;  1WOH A;  4GSZ A;  1WOG A;  5HJA A;  3E6V A;  4GWC A;  1T4T A;  3RLA A;  2ZAV A;  4RHL A;  4RHI A;  4CEV A;  4Q42 A;  1P8O A;  4MYF A;  4MYL A;  4IU1 A;  1P8P A;  4RHK A;  3MMR A;  5CEV A;  1P8Q A;  1HQG A;  1WVA A;  4IU5 A;  4MYN A;  4RLA A;  3MJL A;  3F80 A;  3NIO A;  1T4R A;  3TF3 A;  2A0M A;  1T5G A;  1D3V A;  4I06 A;  3KV2 A;  4HWW A;  1T5F A;  1TA1 A;  4IXV A;  1ZPG A;  4RHM A;  1ZPE A;  5HJ9 A;  3SKK A;  4MYK A;  3E8Z A;  3THJ A;  4GSV A;  1GQ7 A;  1T4S A;  4IU0 A;  4RHQ A;  3PZL A;  4IE1 A;  3M1R A;  4Q3V A;  3E6K A;  1P8M A;  1GQ6 A;  4Q3Q A;  2RLA A;  3SJT A;  4FCK A;  2PHO A;  3SL0 A;  2EF5 A;  1HQH A;  4Q3P A;  4G3H A;  4IU4 A;  3NIQ A;  4IE3 A;  1PQ3 A;  3GMZ A;  1P8S A;  1WVB A;  2EF4 A;  4Q3S A;  1HQX A;  3LHL A;  1WOI A;  4IXU A;  1P8R A;  4GSM A;  3DJ8 A;  4GWD A;  1TBJ A;  4MXR A;  1XFK A;  4Q3R A;  4FCI A;  4HZE A;  1HQ5 A;  3SL1 A;  4Q3T A;  3E9B A;  4HXQ A;  3LP7 A;  4Q3R C;  3NIP A;  1TBH A;  3THE A;  2PHA A; 
1WVAA 2AEBA 2PHAA 2PHOA 2PLLA 2ZAVA 3DJ8A 3F80A 3GMZA
similar chains in the Genus database (40% sequence similarity)
None
similar chains in the pdb database (40% sequence similarity)

 
#similar chains in the Genus database (40% sequence similarity)
1WVA A; 2AEB A; 2PHA A; 2PHO A; 2PLL A; 2ZAV A; 3DJ8 A; 3F80 A; 3GMZ A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)


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