1ZZ3A

Crystal structure of a hdac-like protein with cypx bound
Total Genus 139
50100150200250300350020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
367
structure length
367
Chain Sequence
AIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLADI
5010015020025030035035030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTVIII2 (128-131)S1 (3-6)AH1 (40-53)S2 (60-61)3H1 (9-12)AH4 (107-127)TIV4 (137-140)TIV1 (19-22)TVIII1 (33-36)TI1 (36-39)S10 (304-308)TIV8 (313-316)3H3 (55-58)AH2 (69-74)TI4 (145-148)AH3 (78-89)TI'1 (150-153)TII1 (104-107)TI2 (90-93)S3 (93-95)S4 (102-104)TIV3 (98-101)S5 (132-135)TI'2 (300-303)S9 (260-265)O1 (135-137)TVIII3 (153-156)TI3 (141-144)S6 (174-178)AH6 (185-191)O2 (183-185)AH5 (157-168)TI6 (194-197)TVIII5 (258-261)TI10 (273-276)TII2 (204-207)S7 (197-204)TI7 (214-217)S8 (227-232)TI5 (191-194)AH7 (238-256)TIV7 (209-212)TIV6 (207-210)TII3 (223-226)3H5 (362-367)3H4 (221-223)TII4 (233-236)AH11 (352-360)AH8 (282-300)TI9 (270-273)AH9 (316-329)TI8 (267-270)AH10 (338-344)3H2 (26-28)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Alcaligenaceae bacterium
publication title Crystal structure of a bacterial class 2 histone deacetylase homologue
pubmed doi rcsb
molecule keywords Histone deacetylase-like amidohydrolase
total genus 139
structure length 367
sequence length 367
chains with identical sequence B, C, D
ec nomenclature ec 3.5.1.-:
pdb deposition date 2005-06-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 1zz3A00
3MZ7A 5D1CA 5D1DA 3C0YA 5THTA 4CBYA 3Q9FA 4ZUMA 5G1BA 5LI3A 3Q9BA 5ICNB 4LXZA 5FCWA 2VCGA 5EFHA 4A69A 3MZ6A 2VQJA 5EEMA 3F0RA 4BZ8A 5JI5A 3C10A 5EFGA 3Q9EA 4QA2A 2VQQA 5DC6A 5EF8A 3EW8A 5G0HA 5EFJD 5EEFA 4BZ6A 4BZ9A 1W22A 2V5WA 1T67A 3ZNSA 4ZUOA 4RN1A 5DC7A 5IWGA 5EENA 3SFFA 3EWFA 4RN0A 3ZNRA 5BWZA 1ZZ3A 4RN2A 4QA1A 4BZ5A 4QA0A 2VQWG 5FUEA 5THSA 5G17A 4CQFA 4QA7A 3F07A 1T64A 2VQMA 3MAXA 3MZ4A 3MZ3A 5G0JA 4BZ7A 1C3RA 3EZTA 5G12A 4CBTA 5G1AA 5THUA 5G13A 2VQVA 5EEKA 4BKXB 1C3SA 3Q9CA 5D1BA 2V5XA 2GH6A 3RQDA 5G0GA 1T69A 4LY1A 5DC5A 5G11A 3SFHA 5IX0A 3MENA 3C0ZA 5G0XA 5EEIA 5G1CA 4QA3A 3F06A 5DC8A 4ZUQA 5G0YA 2VQOA 5G0IA 4QA6A 5EFBD 1ZZ0A 5THVA 4QA4A 5G3WA 3EZPA 4QA5A 4ZURA 5G10A 4ZUPA 4ZUNA 1ZZ1A 5A2SA 5EF7A 1C3PA 1VKGA 5EFNA 5EFKB
chains in the Genus database with same CATH superfamily
3MZ7A 5D1CA 4Q42A 5D1DA 1TBHA 1D3VA 3C0YA 3TF3A 5THTA 4Q3UA 4RHIA 4CBYA 3E6KA 3Q9FA 4ZUMA 4DZ4A 5G1BA 3SL1A 5LI3A 4GSVA 3Q9BA 5ICNB 4LXZA 1HQGA 4Q3QA 4IE3A 5FCWA 2EF4A 3RLAA 2VCGA 3THJA 5EFHA 3GN0A 4FCKA 4A69A 4Q40A 3E8ZA 3MZ6A 4ITYA 2VQJA 5EEMA 1P8MA 1T4RA 3E9BA 3F0RA 4BZ8A 5CEVA 1PQ3A 5JI5A 2ZAVA 3C10A 3SL0A 4GWDA 3NIQA 5EFGA 4IU1A 3MFWA 3Q9EA 4QA2A 4MYFA 1CEVA 2VQQA 3THEA 4GSZA 1RLAA 5DC6A 5EF8A 3EW8A 5G0HA 1XFKA 5EFJD 1HQ5A 5EEFA 4BZ6A 4MXRA 1P8SA 4BZ9A 1W22A 1HQHA 2V5WA 1T67A 3ZNSA 4ZUOA 4IU0A 4RN1A 3NIOA 5DC7A 5IWGA 5EENA 2PHAA 5HJ9A 4IE1A 3SFFA 3LP4A 3EWFA 4RN0A 3LHLA 3ZNRA 4HXQA 4IXUA 5BWZA 1WOHA 4Q3PA 1ZZ3A 2RLAA 4QA1A 4MYLA 4RN2A 4BZ5A 4QA0A 2EIVA 2VQWG 4I06A 1P8RA 4Q3VA 4RHJA 4RHQA 4FCIA 5FUEA 5G17A 5THSA 4CEVA 4CQFA 4Q3RC 4QA7A 3F07A 1T64A 2VQMA 3MAXA 3MZ4A 3MZ3A 5G0JA 3SJTA 1C3RA 3EZTA 4BZ7A 5G12A 1GQ7A 1P8PA 3THHA 4CBTA 1T4TA 3CEVA 1T5FA 1ZPGA 1T4SA 5G1AA 3LP7A 2PHOA 4IXVA 5THUA 5G13A 5RLAA 2VQVA 5EEKA 4BKXB 1P8QA 1WOGA 1HQFA 1C3SA 2AEBA 3E8QA 1WVBA 4RHLA 4HWWA 4RLAA 3SKKA 1T4PA 1HQXA 3Q9CA 1TBLA 3M1RA 4MYKA 5D1BA 1R1OA 2V5XA 2GH6A 3RQDA 5G0GA 1T69A 4GWCA 5EFKB 3KV2A 4IU4A 2A0MA 4LY1A 4RHKA 5DC5A 5G11A 1TA1A 4RHMA 5IX0A 3SFHA 3MENA 3C0ZA 5G0XA 4G3HA 5EEIA 4MYNA 4Q3TA 3E6VA 5G1CA 4QA3A 5HJAA 3F06A 5DC8A 3DJ8A 4HZEA 4ZUQA 4IE2A 4Q41A 5G0YA 1WVAA 2VQOA 5G0IA 1WOIA 4QA6A 5EFBD 1ZZ0A 5THVA 1GQ6A 3MMRA 4QA4A 3PZLA 1ZPEA 4IU5A 5G3WA 3EZPA 4QA5A 4ZURA 3MFVA 5G10A 4ZUPA 3F80A 1P8OA 1T5GA 3GMZA 3NIPA 4Q3SA 2CEVA 3MJLA 4ZUNA 1TBJA 1ZZ1A 5A2SA 2PLLA 5EF7A 1C3PA 1VKGA 3TH7A 5EFNA 4Q3RA 4GSMA 1P8NA 2EF5A
chains in the Genus database with same CATH topology
3MZ7A 5D1CA 5D1DA 3C0YA 5THTA 4CBYA 3Q9FA 4ZUMA 5G1BA 5LI3A 3Q9BA 5ICNB 4LXZA 5FCWA 2VCGA 5EFHA 4A69A 3MZ6A 2VQJA 5EEMA 3F0RA 4BZ8A 5JI5A 3C10A 5EFGA 3Q9EA 4QA2A 2VQQA 5DC6A 5EF8A 3EW8A 5G0HA 5EFJD 5EEFA 4BZ6A 4BZ9A 1W22A 2V5WA 1T67A 3ZNSA 4ZUOA 4RN1A 5DC7A 5IWGA 5EENA 3SFFA 3EWFA 4RN0A 3ZNRA 5BWZA 1ZZ3A 4RN2A 4QA1A 4BZ5A 4QA0A 2VQWG 5FUEA 5THSA 5G17A 4CQFA 4QA7A 3F07A 1T64A 2VQMA 3MAXA 3MZ4A 3MZ3A 5G0JA 4BZ7A 1C3RA 3EZTA 5G12A 4CBTA 5G1AA 5THUA 5G13A 2VQVA 5EEKA 4BKXB 1C3SA 3Q9CA 5D1BA 2V5XA 2GH6A 3RQDA 5G0GA 1T69A 4LY1A 5DC5A 5G11A 3SFHA 5IX0A 3MENA 3C0ZA 5G0XA 5EEIA 5G1CA 4QA3A 3F06A 5DC8A 4ZUQA 5G0YA 2VQOA 5G0IA 4QA6A 5EFBD 1ZZ0A 5THVA 4QA4A 5G3WA 3EZPA 4QA5A 4ZURA 5G10A 4ZUPA 4ZUNA 1ZZ1A 5A2SA 5EF7A 1C3PA 1VKGA 5EFNA 5EFKB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MZ7 A;  5D1C A;  5D1D A;  3C0Y A;  5THT A;  4CBY A;  3Q9F A;  4ZUM A;  5G1B A;  5LI3 A;  3Q9B A;  5ICN B;  4LXZ A;  5FCW A;  2VCG A;  5EFH A;  4A69 A;  3MZ6 A;  2VQJ A;  5EEM A;  3F0R A;  4BZ8 A;  5JI5 A;  3C10 A;  5EFG A;  3Q9E A;  4QA2 A;  2VQQ A;  5DC6 A;  5EF8 A;  3EW8 A;  5G0H A;  5EFJ D;  5EEF A;  4BZ6 A;  4BZ9 A;  1W22 A;  2V5W A;  1T67 A;  3ZNS A;  4ZUO A;  4RN1 A;  5DC7 A;  5IWG A;  5EEN A;  3SFF A;  3EWF A;  4RN0 A;  3ZNR A;  5BWZ A;  1ZZ3 A;  4RN2 A;  4QA1 A;  4BZ5 A;  4QA0 A;  2VQW G;  5FUE A;  5THS A;  5G17 A;  4CQF A;  4QA7 A;  3F07 A;  1T64 A;  2VQM A;  3MAX A;  3MZ4 A;  3MZ3 A;  5G0J A;  4BZ7 A;  1C3R A;  3EZT A;  5G12 A;  4CBT A;  5G1A A;  5THU A;  5G13 A;  2VQV A;  5EEK A;  4BKX B;  1C3S A;  3Q9C A;  5D1B A;  2V5X A;  2GH6 A;  3RQD A;  5G0G A;  1T69 A;  4LY1 A;  5DC5 A;  5G11 A;  3SFH A;  5IX0 A;  3MEN A;  3C0Z A;  5G0X A;  5EEI A;  5G1C A;  4QA3 A;  3F06 A;  5DC8 A;  4ZUQ A;  5G0Y A;  2VQO A;  5G0I A;  4QA6 A;  5EFB D;  1ZZ0 A;  5THV A;  4QA4 A;  5G3W A;  3EZP A;  4QA5 A;  4ZUR A;  5G10 A;  4ZUP A;  4ZUN A;  1ZZ1 A;  5A2S A;  5EF7 A;  1C3P A;  1VKG A;  5EFN A;  5EFK B; 
#chains in the Genus database with same CATH topology
 3MZ7 A;  5D1C A;  4Q42 A;  5D1D A;  1TBH A;  1D3V A;  3C0Y A;  3TF3 A;  5THT A;  4Q3U A;  4RHI A;  4CBY A;  3E6K A;  3Q9F A;  4ZUM A;  4DZ4 A;  5G1B A;  3SL1 A;  5LI3 A;  4GSV A;  3Q9B A;  5ICN B;  4LXZ A;  1HQG A;  4Q3Q A;  4IE3 A;  5FCW A;  2EF4 A;  3RLA A;  2VCG A;  3THJ A;  5EFH A;  3GN0 A;  4FCK A;  4A69 A;  4Q40 A;  3E8Z A;  3MZ6 A;  4ITY A;  2VQJ A;  5EEM A;  1P8M A;  1T4R A;  3E9B A;  3F0R A;  4BZ8 A;  5CEV A;  1PQ3 A;  5JI5 A;  2ZAV A;  3C10 A;  3SL0 A;  4GWD A;  3NIQ A;  5EFG A;  4IU1 A;  3MFW A;  3Q9E A;  4QA2 A;  4MYF A;  1CEV A;  2VQQ A;  3THE A;  4GSZ A;  1RLA A;  5DC6 A;  5EF8 A;  3EW8 A;  5G0H A;  1XFK A;  5EFJ D;  1HQ5 A;  5EEF A;  4BZ6 A;  4MXR A;  1P8S A;  4BZ9 A;  1W22 A;  1HQH A;  2V5W A;  1T67 A;  3ZNS A;  4ZUO A;  4IU0 A;  4RN1 A;  3NIO A;  5DC7 A;  5IWG A;  5EEN A;  2PHA A;  5HJ9 A;  4IE1 A;  3SFF A;  3LP4 A;  3EWF A;  4RN0 A;  3LHL A;  3ZNR A;  4HXQ A;  4IXU A;  5BWZ A;  1WOH A;  4Q3P A;  1ZZ3 A;  2RLA A;  4QA1 A;  4MYL A;  4RN2 A;  4BZ5 A;  4QA0 A;  2EIV A;  2VQW G;  4I06 A;  1P8R A;  4Q3V A;  4RHJ A;  4RHQ A;  4FCI A;  5FUE A;  5G17 A;  5THS A;  4CEV A;  4CQF A;  4Q3R C;  4QA7 A;  3F07 A;  1T64 A;  2VQM A;  3MAX A;  3MZ4 A;  3MZ3 A;  5G0J A;  3SJT A;  1C3R A;  3EZT A;  4BZ7 A;  5G12 A;  1GQ7 A;  1P8P A;  3THH A;  4CBT A;  1T4T A;  3CEV A;  1T5F A;  1ZPG A;  1T4S A;  5G1A A;  3LP7 A;  2PHO A;  4IXV A;  5THU A;  5G13 A;  5RLA A;  2VQV A;  5EEK A;  4BKX B;  1P8Q A;  1WOG A;  1HQF A;  1C3S A;  2AEB A;  3E8Q A;  1WVB A;  4RHL A;  4HWW A;  4RLA A;  3SKK A;  1T4P A;  1HQX A;  3Q9C A;  1TBL A;  3M1R A;  4MYK A;  5D1B A;  1R1O A;  2V5X A;  2GH6 A;  3RQD A;  5G0G A;  1T69 A;  4GWC A;  5EFK B;  3KV2 A;  4IU4 A;  2A0M A;  4LY1 A;  4RHK A;  5DC5 A;  5G11 A;  1TA1 A;  4RHM A;  5IX0 A;  3SFH A;  3MEN A;  3C0Z A;  5G0X A;  4G3H A;  5EEI A;  4MYN A;  4Q3T A;  3E6V A;  5G1C A;  4QA3 A;  5HJA A;  3F06 A;  5DC8 A;  3DJ8 A;  4HZE A;  4ZUQ A;  4IE2 A;  4Q41 A;  5G0Y A;  1WVA A;  2VQO A;  5G0I A;  1WOI A;  4QA6 A;  5EFB D;  1ZZ0 A;  5THV A;  1GQ6 A;  3MMR A;  4QA4 A;  3PZL A;  1ZPE A;  4IU5 A;  5G3W A;  3EZP A;  4QA5 A;  4ZUR A;  3MFV A;  5G10 A;  4ZUP A;  3F80 A;  1P8O A;  1T5G A;  3GMZ A;  3NIP A;  4Q3S A;  2CEV A;  3MJL A;  4ZUN A;  1TBJ A;  1ZZ1 A;  5A2S A;  2PLL A;  5EF7 A;  1C3P A;  1VKG A;  3TH7 A;  5EFN A;  4Q3R A;  4GSM A;  1P8N A;  2EF5 A; 
#chains in the Genus database with same CATH homology
 3MZ7 A;  5D1C A;  5D1D A;  3C0Y A;  5THT A;  4CBY A;  3Q9F A;  4ZUM A;  5G1B A;  5LI3 A;  3Q9B A;  5ICN B;  4LXZ A;  5FCW A;  2VCG A;  5EFH A;  4A69 A;  3MZ6 A;  2VQJ A;  5EEM A;  3F0R A;  4BZ8 A;  5JI5 A;  3C10 A;  5EFG A;  3Q9E A;  4QA2 A;  2VQQ A;  5DC6 A;  5EF8 A;  3EW8 A;  5G0H A;  5EFJ D;  5EEF A;  4BZ6 A;  4BZ9 A;  1W22 A;  2V5W A;  1T67 A;  3ZNS A;  4ZUO A;  4RN1 A;  5DC7 A;  5IWG A;  5EEN A;  3SFF A;  3EWF A;  4RN0 A;  3ZNR A;  5BWZ A;  1ZZ3 A;  4RN2 A;  4QA1 A;  4BZ5 A;  4QA0 A;  2VQW G;  5FUE A;  5THS A;  5G17 A;  4CQF A;  4QA7 A;  3F07 A;  1T64 A;  2VQM A;  3MAX A;  3MZ4 A;  3MZ3 A;  5G0J A;  4BZ7 A;  1C3R A;  3EZT A;  5G12 A;  4CBT A;  5G1A A;  5THU A;  5G13 A;  2VQV A;  5EEK A;  4BKX B;  1C3S A;  3Q9C A;  5D1B A;  2V5X A;  2GH6 A;  3RQD A;  5G0G A;  1T69 A;  4LY1 A;  5DC5 A;  5G11 A;  3SFH A;  5IX0 A;  3MEN A;  3C0Z A;  5G0X A;  5EEI A;  5G1C A;  4QA3 A;  3F06 A;  5DC8 A;  4ZUQ A;  5G0Y A;  2VQO A;  5G0I A;  4QA6 A;  5EFB D;  1ZZ0 A;  5THV A;  4QA4 A;  5G3W A;  3EZP A;  4QA5 A;  4ZUR A;  5G10 A;  4ZUP A;  4ZUN A;  1ZZ1 A;  5A2S A;  5EF7 A;  1C3P A;  1VKG A;  5EFN A;  5EFK B; 
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