2GH6A

Crystal structure of a hdac-like protein with 9,9,9-trifluoro-8-oxo-n-phenylnonan amide bound
Total Genus 135
50100150200250300350020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
135
sequence length
367
structure length
367
Chain Sequence
AIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLADI
5010015020025030035035030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTVIII2 (128-131)S1 (3-6)AH1 (40-53)S2 (60-61)3H1 (9-12)AH4 (107-127)TIV5 (137-140)TIV1 (19-22)TVIII1 (33-36)TI1 (26-29)TIV3 (25-28)TI2 (36-39)S10 (304-308)TIV8 (313-316)3H2 (55-58)AH2 (69-74)TI5 (145-148)AH3 (78-89)TI'1 (150-153)TII1 (104-107)TI3 (90-93)S4 (102-103)S3 (94-95)TIV4 (98-101)S5 (132-135)TI'2 (300-303)S9 (260-265)O1 (135-137)TVIII3 (153-156)TI4 (141-144)S6 (174-178)AH6 (185-191)AH5 (157-169)TI7 (194-197)TVIII7 (258-261)TI11 (273-276)TII2 (204-207)TI8 (214-217)S8 (227-232)TI6 (191-194)AH7 (238-256)S7 (197-204)TIV7 (209-212)TIV6 (207-210)TII3 (223-226)3H4 (362-367)3H3 (221-223)TII4 (233-236)AH8 (282-300)TI10 (270-273)AH11 (352-360)TI9 (267-270)AH9 (316-329)AH10 (338-344)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Alcaligenaceae bacterium fb188
publication title Complex structure of a bacterial class 2 histone deacetylase homologue with a trifluoromethylketone inhibitor.
pubmed doi rcsb
molecule keywords Histone deacetylase-like amidohydrolase
total genus 135
structure length 367
sequence length 367
chains with identical sequence B, C, D
ec nomenclature ec 3.5.1.-:
pdb deposition date 2006-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 2gh6A00
3Q9CA 5G0GA 5G0IA 5G11A 5EEIA 3MENA 4LY1A 5EF7A 2V5XA 3Q9BA 4RN2A 5EENA 3F0RA 1T64A 5THSA 4ZUQA 4BZ7A 2VQMA 5DC5A 3MAXA 4ZUOA 3RQDA 5EEKA 4RN0A 1C3SA 5D1BA 3Q9FA 5THUA 4ZUNA 5DC6A 4CBTA 1ZZ3A 4QA7A 5G3WA 5EFNA 4BZ9A 4CBYA 4LXZA 3C10A 5G1AA 5G0HA 3Q9EA 5G17A 3EZTA 5FCWA 2VQQA 3F06A 5EF8A 3ZNRA 2VQVA 3ZNSA 5DC7A 5G12A 2GH6A 5G0YA 5THTA 3SFFA 5A2SA 4QA2A 3EW8A 2V5WA 5EFKB 5EFHA 1C3PA 5DC8A 4QA1A 5G1BA 5BWZA 4ZURA 5G10A 1ZZ1A 4ZUPA 5G1CA 3C0ZA 4BZ5A 5D1DA 5EEMA 2VQWG 3C0YA 5EEFA 4ZUMA 2VCGA 5G0XA 5G0JA 3MZ7A 1W22A 4RN1A 2VQOA 5EFGA 4A69A 1VKGA 5IX0A 5FUEA 5JI5A 5LI3A 3MZ3A 1C3RA 1ZZ0A 3MZ6A 5G13A 2VQJA 4QA0A 4QA6A 4BZ6A 3F07A 3MZ4A 4CQFA 1T69A 5THVA 5EFBD 5EFJD 5IWGA 3EWFA 4BKXB 4QA4A 1T67A 4QA5A 5D1CA 3EZPA 4BZ8A 5ICNB 3SFHA 4QA3A
chains in the Genus database with same CATH superfamily
3E6KA 3Q9CA 4RHMA 5G0GA 5G0IA 4Q40A 2EF5A 4RHKA 5G11A 3RLAA 3SJTA 5EEIA 1ZPGA 3MENA 4LY1A 5EF7A 3GN0A 2V5XA 1TBLA 2CEVA 3E8QA 3Q9BA 4RN2A 1P8MA 3MFWA 4Q3SA 3M1RA 5EENA 3F0RA 1T64A 1T5GA 1TBJA 4IE3A 4MYKA 1HQHA 5THSA 4ZUQA 1WOGA 1P8PA 4Q3QA 3LP4A 4IXUA 2VQMA 5DC5A 3MAXA 4ZUOA 4BZ7A 1GQ6A 1HQ5A 3RQDA 5EEKA 4RN0A 1C3SA 1RLAA 4GSVA 4I06A 3Q9FA 4MYNA 5D1BA 2PHOA 1T4SA 5THUA 4ZUNA 5DC6A 4CBTA 1ZZ3A 4QA7A 5G3WA 5EFNA 4IU0A 4BZ9A 2EF4A 4CBYA 4MYFA 4RHJA 4LXZA 3E9BA 4GWDA 4HXQA 3C10A 3TF3A 3LHLA 2RLAA 5G0HA 3Q9EA 5G1AA 5G17A 1CEVA 3EZTA 5FCWA 2VQQA 1HQFA 1P8QA 4FCIA 4IE1A 3SL1A 4GSMA 3THHA 2EIVA 3F06A 4GWCA 5EF8A 4Q3VA 4IU4A 3ZNRA 2VQVA 1WVAA 2A0MA 1HQXA 3ZNSA 5DC7A 5G12A 2GH6A 4Q3TA 5G0YA 1WVBA 3PZLA 5THTA 4QA2A 3SFFA 5A2SA 4Q41A 2PLLA 4IXVA 4MYLA 3NIOA 3EW8A 5HJAA 5CEVA 4G3HA 2V5WA 5EFHA 5EFKB 1T4TA 1C3PA 4IU1A 1T5FA 4RHIA 3LP7A 3GMZA 3NIPA 5DC8A 3THJA 4QA1A 1WOHA 3E6VA 4ITYA 5G1BA 5BWZA 4ZURA 1R1OA 5G10A 1ZZ1A 4CEVA 4ZUPA 5G1CA 3C0ZA 1P8SA 4BZ5A 4HZEA 5D1DA 5EEMA 4RHQA 3MJLA 2VQWG 3E8ZA 3C0YA 1HQGA 3KV2A 4Q3UA 1P8NA 5EEFA 4ZUMA 2VCGA 4Q3RA 5G0XA 5G0JA 4DZ4A 3MZ7A 3SL0A 2AEBA 1W22A 1TBHA 1T4RA 2VQOA 3NIQA 4IU5A 4RN1A 1WOIA 2PHAA 1P8OA 4IE2A 2ZAVA 5EFGA 4A69A 1VKGA 1D3VA 5IX0A 5FUEA 5JI5A 5LI3A 3MZ3A 4RLAA 1C3RA 1ZZ0A 3MZ6A 1T4PA 5G13A 3TH7A 3MMRA 2VQJA 4QA0A 4QA6A 3SKKA 1TA1A 4BZ6A 1PQ3A 3DJ8A 3F07A 3MZ4A 4CQFA 1T69A 4Q3PA 5HJ9A 4RHLA 5THVA 5EFBD 1GQ7A 5EFJD 3F80A 1ZPEA 3EWFA 5IWGA 3THEA 4BKXB 4GSZA 4QA4A 3CEVA 4HWWA 1T67A 1XFKA 1P8RA 4FCKA 4QA5A 5D1CA 3EZPA 4MXRA 4BZ8A 5ICNB 4Q42A 5RLAA 3SFHA 3MFVA 4Q3RC 4QA3A
chains in the Genus database with same CATH topology
3Q9CA 5G0GA 5G0IA 5G11A 5EEIA 3MENA 4LY1A 5EF7A 2V5XA 3Q9BA 4RN2A 5EENA 3F0RA 1T64A 5THSA 4ZUQA 4BZ7A 2VQMA 5DC5A 3MAXA 4ZUOA 3RQDA 5EEKA 4RN0A 1C3SA 5D1BA 3Q9FA 5THUA 4ZUNA 5DC6A 4CBTA 1ZZ3A 4QA7A 5G3WA 5EFNA 4BZ9A 4CBYA 4LXZA 3C10A 5G1AA 5G0HA 3Q9EA 5G17A 3EZTA 5FCWA 2VQQA 3F06A 5EF8A 3ZNRA 2VQVA 3ZNSA 5DC7A 5G12A 2GH6A 5G0YA 5THTA 3SFFA 5A2SA 4QA2A 3EW8A 2V5WA 5EFKB 5EFHA 1C3PA 5DC8A 4QA1A 5G1BA 5BWZA 4ZURA 5G10A 1ZZ1A 4ZUPA 5G1CA 3C0ZA 4BZ5A 5D1DA 5EEMA 2VQWG 3C0YA 5EEFA 4ZUMA 2VCGA 5G0XA 5G0JA 3MZ7A 1W22A 4RN1A 2VQOA 5EFGA 4A69A 1VKGA 5IX0A 5FUEA 5JI5A 5LI3A 3MZ3A 1C3RA 1ZZ0A 3MZ6A 5G13A 2VQJA 4QA0A 4QA6A 4BZ6A 3F07A 3MZ4A 4CQFA 1T69A 5THVA 5EFBD 5EFJD 5IWGA 3EWFA 4BKXB 4QA4A 1T67A 4QA5A 5D1CA 3EZPA 4BZ8A 5ICNB 3SFHA 4QA3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3Q9C A;  5G0G A;  5G0I A;  5G11 A;  5EEI A;  3MEN A;  4LY1 A;  5EF7 A;  2V5X A;  3Q9B A;  4RN2 A;  5EEN A;  3F0R A;  1T64 A;  5THS A;  4ZUQ A;  4BZ7 A;  2VQM A;  5DC5 A;  3MAX A;  4ZUO A;  3RQD A;  5EEK A;  4RN0 A;  1C3S A;  5D1B A;  3Q9F A;  5THU A;  4ZUN A;  5DC6 A;  4CBT A;  1ZZ3 A;  4QA7 A;  5G3W A;  5EFN A;  4BZ9 A;  4CBY A;  4LXZ A;  3C10 A;  5G1A A;  5G0H A;  3Q9E A;  5G17 A;  3EZT A;  5FCW A;  2VQQ A;  3F06 A;  5EF8 A;  3ZNR A;  2VQV A;  3ZNS A;  5DC7 A;  5G12 A;  2GH6 A;  5G0Y A;  5THT A;  3SFF A;  5A2S A;  4QA2 A;  3EW8 A;  2V5W A;  5EFK B;  5EFH A;  1C3P A;  5DC8 A;  4QA1 A;  5G1B A;  5BWZ A;  4ZUR A;  5G10 A;  1ZZ1 A;  4ZUP A;  5G1C A;  3C0Z A;  4BZ5 A;  5D1D A;  5EEM A;  2VQW G;  3C0Y A;  5EEF A;  4ZUM A;  2VCG A;  5G0X A;  5G0J A;  3MZ7 A;  1W22 A;  4RN1 A;  2VQO A;  5EFG A;  4A69 A;  1VKG A;  5IX0 A;  5FUE A;  5JI5 A;  5LI3 A;  3MZ3 A;  1C3R A;  1ZZ0 A;  3MZ6 A;  5G13 A;  2VQJ A;  4QA0 A;  4QA6 A;  4BZ6 A;  3F07 A;  3MZ4 A;  4CQF A;  1T69 A;  5THV A;  5EFB D;  5EFJ D;  5IWG A;  3EWF A;  4BKX B;  4QA4 A;  1T67 A;  4QA5 A;  5D1C A;  3EZP A;  4BZ8 A;  5ICN B;  3SFH A;  4QA3 A; 
#chains in the Genus database with same CATH topology
 3E6K A;  3Q9C A;  4RHM A;  5G0G A;  5G0I A;  4Q40 A;  2EF5 A;  4RHK A;  5G11 A;  3RLA A;  3SJT A;  5EEI A;  1ZPG A;  3MEN A;  4LY1 A;  5EF7 A;  3GN0 A;  2V5X A;  1TBL A;  2CEV A;  3E8Q A;  3Q9B A;  4RN2 A;  1P8M A;  3MFW A;  4Q3S A;  3M1R A;  5EEN A;  3F0R A;  1T64 A;  1T5G A;  1TBJ A;  4IE3 A;  4MYK A;  1HQH A;  5THS A;  4ZUQ A;  1WOG A;  1P8P A;  4Q3Q A;  3LP4 A;  4IXU A;  2VQM A;  5DC5 A;  3MAX A;  4ZUO A;  4BZ7 A;  1GQ6 A;  1HQ5 A;  3RQD A;  5EEK A;  4RN0 A;  1C3S A;  1RLA A;  4GSV A;  4I06 A;  3Q9F A;  4MYN A;  5D1B A;  2PHO A;  1T4S A;  5THU A;  4ZUN A;  5DC6 A;  4CBT A;  1ZZ3 A;  4QA7 A;  5G3W A;  5EFN A;  4IU0 A;  4BZ9 A;  2EF4 A;  4CBY A;  4MYF A;  4RHJ A;  4LXZ A;  3E9B A;  4GWD A;  4HXQ A;  3C10 A;  3TF3 A;  3LHL A;  2RLA A;  5G0H A;  3Q9E A;  5G1A A;  5G17 A;  1CEV A;  3EZT A;  5FCW A;  2VQQ A;  1HQF A;  1P8Q A;  4FCI A;  4IE1 A;  3SL1 A;  4GSM A;  3THH A;  2EIV A;  3F06 A;  4GWC A;  5EF8 A;  4Q3V A;  4IU4 A;  3ZNR A;  2VQV A;  1WVA A;  2A0M A;  1HQX A;  3ZNS A;  5DC7 A;  5G12 A;  2GH6 A;  4Q3T A;  5G0Y A;  1WVB A;  3PZL A;  5THT A;  4QA2 A;  3SFF A;  5A2S A;  4Q41 A;  2PLL A;  4IXV A;  4MYL A;  3NIO A;  3EW8 A;  5HJA A;  5CEV A;  4G3H A;  2V5W A;  5EFH A;  5EFK B;  1T4T A;  1C3P A;  4IU1 A;  1T5F A;  4RHI A;  3LP7 A;  3GMZ A;  3NIP A;  5DC8 A;  3THJ A;  4QA1 A;  1WOH A;  3E6V A;  4ITY A;  5G1B A;  5BWZ A;  4ZUR A;  1R1O A;  5G10 A;  1ZZ1 A;  4CEV A;  4ZUP A;  5G1C A;  3C0Z A;  1P8S A;  4BZ5 A;  4HZE A;  5D1D A;  5EEM A;  4RHQ A;  3MJL A;  2VQW G;  3E8Z A;  3C0Y A;  1HQG A;  3KV2 A;  4Q3U A;  1P8N A;  5EEF A;  4ZUM A;  2VCG A;  4Q3R A;  5G0X A;  5G0J A;  4DZ4 A;  3MZ7 A;  3SL0 A;  2AEB A;  1W22 A;  1TBH A;  1T4R A;  2VQO A;  3NIQ A;  4IU5 A;  4RN1 A;  1WOI A;  2PHA A;  1P8O A;  4IE2 A;  2ZAV A;  5EFG A;  4A69 A;  1VKG A;  1D3V A;  5IX0 A;  5FUE A;  5JI5 A;  5LI3 A;  3MZ3 A;  4RLA A;  1C3R A;  1ZZ0 A;  3MZ6 A;  1T4P A;  5G13 A;  3TH7 A;  3MMR A;  2VQJ A;  4QA0 A;  4QA6 A;  3SKK A;  1TA1 A;  4BZ6 A;  1PQ3 A;  3DJ8 A;  3F07 A;  3MZ4 A;  4CQF A;  1T69 A;  4Q3P A;  5HJ9 A;  4RHL A;  5THV A;  5EFB D;  1GQ7 A;  5EFJ D;  3F80 A;  1ZPE A;  3EWF A;  5IWG A;  3THE A;  4BKX B;  4GSZ A;  4QA4 A;  3CEV A;  4HWW A;  1T67 A;  1XFK A;  1P8R A;  4FCK A;  4QA5 A;  5D1C A;  3EZP A;  4MXR A;  4BZ8 A;  5ICN B;  4Q42 A;  5RLA A;  3SFH A;  3MFV A;  4Q3R C;  4QA3 A; 
#chains in the Genus database with same CATH homology
 3Q9C A;  5G0G A;  5G0I A;  5G11 A;  5EEI A;  3MEN A;  4LY1 A;  5EF7 A;  2V5X A;  3Q9B A;  4RN2 A;  5EEN A;  3F0R A;  1T64 A;  5THS A;  4ZUQ A;  4BZ7 A;  2VQM A;  5DC5 A;  3MAX A;  4ZUO A;  3RQD A;  5EEK A;  4RN0 A;  1C3S A;  5D1B A;  3Q9F A;  5THU A;  4ZUN A;  5DC6 A;  4CBT A;  1ZZ3 A;  4QA7 A;  5G3W A;  5EFN A;  4BZ9 A;  4CBY A;  4LXZ A;  3C10 A;  5G1A A;  5G0H A;  3Q9E A;  5G17 A;  3EZT A;  5FCW A;  2VQQ A;  3F06 A;  5EF8 A;  3ZNR A;  2VQV A;  3ZNS A;  5DC7 A;  5G12 A;  2GH6 A;  5G0Y A;  5THT A;  3SFF A;  5A2S A;  4QA2 A;  3EW8 A;  2V5W A;  5EFK B;  5EFH A;  1C3P A;  5DC8 A;  4QA1 A;  5G1B A;  5BWZ A;  4ZUR A;  5G10 A;  1ZZ1 A;  4ZUP A;  5G1C A;  3C0Z A;  4BZ5 A;  5D1D A;  5EEM A;  2VQW G;  3C0Y A;  5EEF A;  4ZUM A;  2VCG A;  5G0X A;  5G0J A;  3MZ7 A;  1W22 A;  4RN1 A;  2VQO A;  5EFG A;  4A69 A;  1VKG A;  5IX0 A;  5FUE A;  5JI5 A;  5LI3 A;  3MZ3 A;  1C3R A;  1ZZ0 A;  3MZ6 A;  5G13 A;  2VQJ A;  4QA0 A;  4QA6 A;  4BZ6 A;  3F07 A;  3MZ4 A;  4CQF A;  1T69 A;  5THV A;  5EFB D;  5EFJ D;  5IWG A;  3EWF A;  4BKX B;  4QA4 A;  1T67 A;  4QA5 A;  5D1C A;  3EZP A;  4BZ8 A;  5ICN B;  3SFH A;  4QA3 A; 
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