3C0ZA

Crystal structure of catalytic domain of human histone deacetylase hdac7 in complex with saha
Total Genus 136
50100150200250300350020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
386
structure length
383
Chain Sequence
TLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQR
5010015020025030035035030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Homo sapiens
publication title Human HDAC7 harbors a class IIa histone deacetylase-specific zinc binding motif and cryptic deacetylase activity.
pubmed doi rcsb
molecule keywords Histone deacetylase 7a
total genus 136
structure length 383
sequence length 386
chains with identical sequence B, C
ec nomenclature ec 3.5.1.98: Histone deacetylase.
pdb deposition date 2008-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 3c0zA00
4BZ7A 4QA3A 4QA1A 5D1DA 5G1CA 5D1BA 1ZZ3A 1T64A 5G1BA 5G13A 3Q9FA 4RN0A 4ZUMA 4LY1A 5EFBD 4RN1A 2V5WA 5EEFA 4QA5A 3RQDA 2VQJA 5EF8A 5DC5A 5G0HA 5IWGA 1T67A 4QA6A 4BKXB 3MZ4A 5EEIA 4BZ5A 5EFNA 2VCGA 3MZ6A 5THUA 4QA4A 4ZUPA 5EF7A 5EEMA 5THTA 4CQFA 3EZPA 5G0IA 4CBYA 3C10A 5EFGA 1ZZ0A 4BZ6A 5G11A 5EFHA 4ZUQA 5JI5A 5D1CA 5FUEA 5THSA 3Q9EA 5G0GA 3ZNRA 5EEKA 5G3WA 3EZTA 1C3SA 4CBTA 5G1AA 5EENA 3Q9CA 5LI3A 3F06A 2VQWG 1C3PA 3MAXA 2VQVA 5G0XA 3MENA 3ZNSA 2VQQA 5EFKB 3F0RA 3C0ZA 5DC8A 1ZZ1A 5DC6A 2V5XA 4QA0A 5EFJD 4ZUNA 4A69A 1W22A 5THVA 3MZ3A 5G0JA 5G10A 1T69A 1C3RA 3C0YA 4ZUOA 2VQOA 4QA7A 4QA2A 5IX0A 4LXZA 5A2SA 5ICNB 3EWFA 3EW8A 5G0YA 3Q9BA 5G12A 5BWZA 5G17A 2GH6A 1VKGA 2VQMA 4BZ9A 4BZ8A 5DC7A 3MZ7A 3F07A 3SFFA 4RN2A 4ZURA 5FCWA 3SFHA
chains in the Genus database with same CATH superfamily
4BZ7A 1T5GA 4QA3A 4QA1A 4I06A 5D1DA 5G1CA 4FCIA 5D1BA 1T64A 1ZZ3A 4MYFA 5G1BA 5G13A 1CEVA 3Q9FA 4HXQA 3MFVA 1P8SA 1TBJA 3KV2A 4Q41A 4RN0A 4Q3VA 4GSVA 3NIQA 4ZUMA 3SL1A 1T5FA 5RLAA 1WOGA 4LY1A 5EFBD 4HZEA 4RN1A 2RLAA 4IE2A 2V5WA 5EEFA 4QA5A 3RQDA 2VQJA 5EF8A 2AEBA 1WOIA 4Q3RA 4Q3UA 3SL0A 3LP7A 3E8ZA 3NIOA 5DC5A 3SKKA 1XFKA 1ZPEA 2PHAA 5G0HA 5IWGA 1T67A 4GWCA 1GQ7A 4QA6A 3M1RA 4IXVA 4Q3SA 4BKXB 4FCKA 1PQ3A 3MZ4A 1TBHA 1T4RA 1P8RA 5EEIA 4BZ5A 4MXRA 4IU0A 5EFNA 2A0MA 2VCGA 2EIVA 3MZ6A 4IU1A 4MYLA 5THUA 1HQXA 5HJAA 4QA4A 4ZUPA 1WOHA 5EF7A 5EEMA 5THTA 4CQFA 4RHIA 3EZPA 5G0IA 4GSZA 4MYNA 4CBYA 3MMRA 3E6VA 3C10A 1HQ5A 3THHA 4HWWA 3MJLA 4Q3TA 4IXUA 1T4SA 1ZZ0A 5EFGA 4BZ6A 5G11A 4IU5A 5EFHA 1P8OA 4ZUQA 3GN0A 4DZ4A 5JI5A 1D3VA 3F80A 4GWDA 5D1CA 5FUEA 1HQGA 5THSA 3Q9EA 5G0GA 4RHMA 2PLLA 3ZNRA 3THEA 4G3HA 5EEKA 4IE3A 3RLAA 3MFWA 5G3WA 3TH7A 1RLAA 1C3SA 3EZTA 4RHLA 4CBTA 1GQ6A 4Q42A 5G1AA 5EENA 3Q9CA 5LI3A 3F06A 3NIPA 4Q40A 2VQWG 1C3PA 3TF3A 3MAXA 2VQVA 1P8PA 3GMZA 3MENA 5G0XA 3ZNSA 2VQQA 3E9BA 3LP4A 4ITYA 5EFKB 3F0RA 3C0ZA 3CEVA 5DC8A 3THJA 1ZZ1A 5DC6A 2V5XA 4QA0A 5EFJD 4ZUNA 4A69A 1W22A 2CEVA 5THVA 2PHOA 3MZ3A 4MYKA 5G0JA 5G10A 3E8QA 1T69A 1C3RA 3C0YA 4GSMA 4IU4A 4Q3PA 4ZUOA 1WVAA 2VQOA 1HQFA 3E6KA 4QA7A 4RLAA 4IE1A 5CEVA 2EF5A 1P8MA 4QA2A 5IX0A 4LXZA 3SJTA 1T4PA 5A2SA 5ICNB 1P8NA 1TA1A 3EW8A 3EWFA 5G0YA 1R1OA 3Q9BA 1T4TA 2ZAVA 1P8QA 1TBLA 4Q3QA 5G12A 2GH6A 5G17A 5BWZA 1VKGA 2VQMA 4BZ9A 4RHJA 4BZ8A 1ZPGA 5DC7A 3LHLA 2EF4A 3MZ7A 4Q3RC 1WVBA 1HQHA 4RHQA 3PZLA 3F07A 4RHKA 3SFFA 3DJ8A 4RN2A 4ZURA 4CEVA 5HJ9A 5FCWA 3SFHA
chains in the Genus database with same CATH topology
4BZ7A 4QA3A 4QA1A 5D1DA 5G1CA 5D1BA 1ZZ3A 1T64A 5G1BA 5G13A 3Q9FA 4RN0A 4ZUMA 4LY1A 5EFBD 4RN1A 2V5WA 5EEFA 4QA5A 3RQDA 2VQJA 5EF8A 5DC5A 5G0HA 5IWGA 1T67A 4QA6A 4BKXB 3MZ4A 5EEIA 4BZ5A 5EFNA 2VCGA 3MZ6A 5THUA 4QA4A 4ZUPA 5EF7A 5EEMA 5THTA 4CQFA 3EZPA 5G0IA 4CBYA 3C10A 5EFGA 1ZZ0A 4BZ6A 5G11A 5EFHA 4ZUQA 5JI5A 5D1CA 5FUEA 5THSA 3Q9EA 5G0GA 3ZNRA 5EEKA 5G3WA 3EZTA 1C3SA 4CBTA 5G1AA 5EENA 3Q9CA 5LI3A 3F06A 2VQWG 1C3PA 3MAXA 2VQVA 5G0XA 3MENA 3ZNSA 2VQQA 5EFKB 3F0RA 3C0ZA 5DC8A 1ZZ1A 5DC6A 2V5XA 4QA0A 5EFJD 4ZUNA 4A69A 1W22A 5THVA 3MZ3A 5G0JA 5G10A 1T69A 1C3RA 3C0YA 4ZUOA 2VQOA 4QA7A 4QA2A 5IX0A 4LXZA 5A2SA 5ICNB 3EWFA 3EW8A 5G0YA 3Q9BA 5G12A 5BWZA 5G17A 2GH6A 1VKGA 2VQMA 4BZ9A 4BZ8A 5DC7A 3MZ7A 3F07A 3SFFA 4RN2A 4ZURA 5FCWA 3SFHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BZ7 A;  4QA3 A;  4QA1 A;  5D1D A;  5G1C A;  5D1B A;  1ZZ3 A;  1T64 A;  5G1B A;  5G13 A;  3Q9F A;  4RN0 A;  4ZUM A;  4LY1 A;  5EFB D;  4RN1 A;  2V5W A;  5EEF A;  4QA5 A;  3RQD A;  2VQJ A;  5EF8 A;  5DC5 A;  5G0H A;  5IWG A;  1T67 A;  4QA6 A;  4BKX B;  3MZ4 A;  5EEI A;  4BZ5 A;  5EFN A;  2VCG A;  3MZ6 A;  5THU A;  4QA4 A;  4ZUP A;  5EF7 A;  5EEM A;  5THT A;  4CQF A;  3EZP A;  5G0I A;  4CBY A;  3C10 A;  5EFG A;  1ZZ0 A;  4BZ6 A;  5G11 A;  5EFH A;  4ZUQ A;  5JI5 A;  5D1C A;  5FUE A;  5THS A;  3Q9E A;  5G0G A;  3ZNR A;  5EEK A;  5G3W A;  3EZT A;  1C3S A;  4CBT A;  5G1A A;  5EEN A;  3Q9C A;  5LI3 A;  3F06 A;  2VQW G;  1C3P A;  3MAX A;  2VQV A;  5G0X A;  3MEN A;  3ZNS A;  2VQQ A;  5EFK B;  3F0R A;  3C0Z A;  5DC8 A;  1ZZ1 A;  5DC6 A;  2V5X A;  4QA0 A;  5EFJ D;  4ZUN A;  4A69 A;  1W22 A;  5THV A;  3MZ3 A;  5G0J A;  5G10 A;  1T69 A;  1C3R A;  3C0Y A;  4ZUO A;  2VQO A;  4QA7 A;  4QA2 A;  5IX0 A;  4LXZ A;  5A2S A;  5ICN B;  3EWF A;  3EW8 A;  5G0Y A;  3Q9B A;  5G12 A;  5BWZ A;  5G17 A;  2GH6 A;  1VKG A;  2VQM A;  4BZ9 A;  4BZ8 A;  5DC7 A;  3MZ7 A;  3F07 A;  3SFF A;  4RN2 A;  4ZUR A;  5FCW A;  3SFH A; 
#chains in the Genus database with same CATH topology
 4BZ7 A;  1T5G A;  4QA3 A;  4QA1 A;  4I06 A;  5D1D A;  5G1C A;  4FCI A;  5D1B A;  1T64 A;  1ZZ3 A;  4MYF A;  5G1B A;  5G13 A;  1CEV A;  3Q9F A;  4HXQ A;  3MFV A;  1P8S A;  1TBJ A;  3KV2 A;  4Q41 A;  4RN0 A;  4Q3V A;  4GSV A;  3NIQ A;  4ZUM A;  3SL1 A;  1T5F A;  5RLA A;  1WOG A;  4LY1 A;  5EFB D;  4HZE A;  4RN1 A;  2RLA A;  4IE2 A;  2V5W A;  5EEF A;  4QA5 A;  3RQD A;  2VQJ A;  5EF8 A;  2AEB A;  1WOI A;  4Q3R A;  4Q3U A;  3SL0 A;  3LP7 A;  3E8Z A;  3NIO A;  5DC5 A;  3SKK A;  1XFK A;  1ZPE A;  2PHA A;  5G0H A;  5IWG A;  1T67 A;  4GWC A;  1GQ7 A;  4QA6 A;  3M1R A;  4IXV A;  4Q3S A;  4BKX B;  4FCK A;  1PQ3 A;  3MZ4 A;  1TBH A;  1T4R A;  1P8R A;  5EEI A;  4BZ5 A;  4MXR A;  4IU0 A;  5EFN A;  2A0M A;  2VCG A;  2EIV A;  3MZ6 A;  4IU1 A;  4MYL A;  5THU A;  1HQX A;  5HJA A;  4QA4 A;  4ZUP A;  1WOH A;  5EF7 A;  5EEM A;  5THT A;  4CQF A;  4RHI A;  3EZP A;  5G0I A;  4GSZ A;  4MYN A;  4CBY A;  3MMR A;  3E6V A;  3C10 A;  1HQ5 A;  3THH A;  4HWW A;  3MJL A;  4Q3T A;  4IXU A;  1T4S A;  1ZZ0 A;  5EFG A;  4BZ6 A;  5G11 A;  4IU5 A;  5EFH A;  1P8O A;  4ZUQ A;  3GN0 A;  4DZ4 A;  5JI5 A;  1D3V A;  3F80 A;  4GWD A;  5D1C A;  5FUE A;  1HQG A;  5THS A;  3Q9E A;  5G0G A;  4RHM A;  2PLL A;  3ZNR A;  3THE A;  4G3H A;  5EEK A;  4IE3 A;  3RLA A;  3MFW A;  5G3W A;  3TH7 A;  1RLA A;  1C3S A;  3EZT A;  4RHL A;  4CBT A;  1GQ6 A;  4Q42 A;  5G1A A;  5EEN A;  3Q9C A;  5LI3 A;  3F06 A;  3NIP A;  4Q40 A;  2VQW G;  1C3P A;  3TF3 A;  3MAX A;  2VQV A;  1P8P A;  3GMZ A;  3MEN A;  5G0X A;  3ZNS A;  2VQQ A;  3E9B A;  3LP4 A;  4ITY A;  5EFK B;  3F0R A;  3C0Z A;  3CEV A;  5DC8 A;  3THJ A;  1ZZ1 A;  5DC6 A;  2V5X A;  4QA0 A;  5EFJ D;  4ZUN A;  4A69 A;  1W22 A;  2CEV A;  5THV A;  2PHO A;  3MZ3 A;  4MYK A;  5G0J A;  5G10 A;  3E8Q A;  1T69 A;  1C3R A;  3C0Y A;  4GSM A;  4IU4 A;  4Q3P A;  4ZUO A;  1WVA A;  2VQO A;  1HQF A;  3E6K A;  4QA7 A;  4RLA A;  4IE1 A;  5CEV A;  2EF5 A;  1P8M A;  4QA2 A;  5IX0 A;  4LXZ A;  3SJT A;  1T4P A;  5A2S A;  5ICN B;  1P8N A;  1TA1 A;  3EW8 A;  3EWF A;  5G0Y A;  1R1O A;  3Q9B A;  1T4T A;  2ZAV A;  1P8Q A;  1TBL A;  4Q3Q A;  5G12 A;  2GH6 A;  5G17 A;  5BWZ A;  1VKG A;  2VQM A;  4BZ9 A;  4RHJ A;  4BZ8 A;  1ZPG A;  5DC7 A;  3LHL A;  2EF4 A;  3MZ7 A;  4Q3R C;  1WVB A;  1HQH A;  4RHQ A;  3PZL A;  3F07 A;  4RHK A;  3SFF A;  3DJ8 A;  4RN2 A;  4ZUR A;  4CEV A;  5HJ9 A;  5FCW A;  3SFH A; 
#chains in the Genus database with same CATH homology
 4BZ7 A;  4QA3 A;  4QA1 A;  5D1D A;  5G1C A;  5D1B A;  1ZZ3 A;  1T64 A;  5G1B A;  5G13 A;  3Q9F A;  4RN0 A;  4ZUM A;  4LY1 A;  5EFB D;  4RN1 A;  2V5W A;  5EEF A;  4QA5 A;  3RQD A;  2VQJ A;  5EF8 A;  5DC5 A;  5G0H A;  5IWG A;  1T67 A;  4QA6 A;  4BKX B;  3MZ4 A;  5EEI A;  4BZ5 A;  5EFN A;  2VCG A;  3MZ6 A;  5THU A;  4QA4 A;  4ZUP A;  5EF7 A;  5EEM A;  5THT A;  4CQF A;  3EZP A;  5G0I A;  4CBY A;  3C10 A;  5EFG A;  1ZZ0 A;  4BZ6 A;  5G11 A;  5EFH A;  4ZUQ A;  5JI5 A;  5D1C A;  5FUE A;  5THS A;  3Q9E A;  5G0G A;  3ZNR A;  5EEK A;  5G3W A;  3EZT A;  1C3S A;  4CBT A;  5G1A A;  5EEN A;  3Q9C A;  5LI3 A;  3F06 A;  2VQW G;  1C3P A;  3MAX A;  2VQV A;  5G0X A;  3MEN A;  3ZNS A;  2VQQ A;  5EFK B;  3F0R A;  3C0Z A;  5DC8 A;  1ZZ1 A;  5DC6 A;  2V5X A;  4QA0 A;  5EFJ D;  4ZUN A;  4A69 A;  1W22 A;  5THV A;  3MZ3 A;  5G0J A;  5G10 A;  1T69 A;  1C3R A;  3C0Y A;  4ZUO A;  2VQO A;  4QA7 A;  4QA2 A;  5IX0 A;  4LXZ A;  5A2S A;  5ICN B;  3EWF A;  3EW8 A;  5G0Y A;  3Q9B A;  5G12 A;  5BWZ A;  5G17 A;  2GH6 A;  1VKG A;  2VQM A;  4BZ9 A;  4BZ8 A;  5DC7 A;  3MZ7 A;  3F07 A;  3SFF A;  4RN2 A;  4ZUR A;  5FCW A;  3SFH A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.