3C10A

Crystal structure of catalytic domain of human histone deacetylase hdac7 in complex with trichostatin a (tsa)
Total Genus 135
50100150200250300350020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
135
sequence length
386
structure length
383
Chain Sequence
TLPFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCMQR
5010015020025030035035030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Homo sapiens
publication title Human HDAC7 harbors a class IIa histone deacetylase-specific zinc binding motif and cryptic deacetylase activity.
pubmed doi rcsb
molecule keywords Histone deacetylase 7a
total genus 135
structure length 383
sequence length 386
chains with identical sequence B, C
ec nomenclature ec 3.5.1.98: Histone deacetylase.
pdb deposition date 2008-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 3c10A00
3SFFA 5ICNB 1T64A 4CBYA 5EEFA 2VQWG 3MENA 5G1CA 5DC5A 5THSA 4QA0A 5G0YA 4QA6A 2V5WA 5EFNA 4ZUMA 4QA1A 1C3PA 5LI3A 5EFGA 2VQJA 4BZ6A 4BKXB 4QA5A 3ZNSA 4RN2A 4QA4A 3EWFA 5EENA 5G12A 4A69A 3EW8A 5G3WA 5EFBD 4CQFA 1T67A 1ZZ1A 2V5XA 5D1CA 3Q9EA 5EEKA 1ZZ3A 3MZ7A 5G0JA 5IWGA 5EEMA 5EEIA 5EFJD 4BZ7A 4ZUQA 2VQQA 3F0RA 5G0GA 3F07A 5G1AA 4CBTA 1T69A 4BZ9A 3F06A 5D1BA 3SFHA 5A2SA 4ZUOA 5G1BA 5IX0A 2VQOA 4ZURA 4LXZA 3MZ3A 5DC6A 5EF7A 5DC8A 3Q9CA 3EZTA 5G17A 5FUEA 5G0IA 1C3SA 1ZZ0A 4QA2A 5EF8A 5G0HA 5DC7A 3ZNRA 5G10A 3MZ6A 5EFHA 4BZ5A 2VCGA 1W22A 2VQVA 5THUA 5G13A 5JI5A 1VKGA 3MAXA 4RN1A 5D1DA 4QA3A 5G0XA 2VQMA 3C10A 5THVA 4QA7A 4RN0A 3MZ4A 3Q9FA 3Q9BA 4LY1A 3RQDA 5THTA 2GH6A 5EFKB 5FCWA 5G11A 4ZUNA 1C3RA 3C0ZA 4ZUPA 5BWZA 4BZ8A 3C0YA 3EZPA
chains in the Genus database with same CATH superfamily
3NIOA 4Q42A 3SFFA 4RHQA 5RLAA 3KV2A 1WVBA 5ICNB 1T64A 1P8MA 4IXUA 2PHOA 5EEFA 2VQWG 2ZAVA 3MENA 5G1CA 4CBYA 1R1OA 4RHIA 3LHLA 4IE2A 1P8SA 3NIQA 5DC5A 4ITYA 1T4PA 4FCKA 5THSA 1ZPGA 4QA0A 1HQ5A 3E6KA 4MXRA 5G0YA 4QA6A 4Q3UA 2V5WA 5EFNA 4ZUMA 4QA1A 1C3PA 4G3HA 1HQGA 2EIVA 3GMZA 5LI3A 3SL0A 2PLLA 5EFGA 3GN0A 1WOHA 2VQJA 3THJA 4BZ6A 4BKXB 4IU4A 4QA5A 1P8NA 3TH7A 1RLAA 3ZNSA 1WOGA 3NIPA 4RN2A 3E8QA 2AEBA 4I06A 4QA4A 3EWFA 5EENA 4Q3TA 5G12A 5HJAA 4A69A 4GSMA 3EW8A 3MFVA 5G3WA 5EFBD 4CQFA 1T67A 1ZZ1A 2PHAA 2V5XA 3THHA 4HXQA 4RHKA 5D1CA 3Q9EA 5EEKA 4IE3A 3RLAA 1ZZ3A 1XFKA 1P8PA 3MZ7A 3E6VA 5G0JA 5IWGA 3LP7A 5EEMA 5EEIA 5EFJD 4BZ7A 3SJTA 4ZUQA 1P8QA 2VQQA 3DJ8A 1HQHA 3F0RA 4GWDA 1HQFA 3E8ZA 4MYFA 4Q40A 3F07A 3CEVA 5G1AA 4CBTA 1T69A 1T5FA 4BZ9A 1T4RA 4RLAA 3F06A 1PQ3A 3MFWA 5D1BA 1CEVA 1WOIA 3SFHA 5A2SA 4IU0A 4ZUOA 4GWCA 5G1BA 5IX0A 1TA1A 2VQOA 4ZURA 4Q3RA 4LXZA 3MZ3A 5DC6A 5EF7A 3MMRA 5DC8A 3MJLA 3Q9CA 1ZPEA 5CEVA 4RHMA 3TF3A 2EF4A 3EZTA 4CEVA 1TBHA 5G17A 1T4SA 1GQ6A 5FUEA 4Q3RC 3LP4A 5G0IA 1C3SA 1ZZ0A 4HWWA 4IE1A 4QA2A 5EF8A 2CEVA 3F80A 1TBJA 1HQXA 4FCIA 4HZEA 5G0HA 5DC7A 4IU1A 3ZNRA 5G10A 3MZ6A 5EFHA 4BZ5A 2VCGA 5G0GA 1W22A 2VQVA 4Q3QA 5THUA 4RHLA 5G13A 5JI5A 1VKGA 3MAXA 3PZLA 4RN1A 5D1DA 4QA3A 4GSVA 4RHJA 5G0XA 2VQMA 4MYKA 4IU5A 1T5GA 3C10A 5THVA 4QA7A 4GSZA 4RN0A 1TBLA 3SL1A 3THEA 3MZ4A 4MYLA 3Q9FA 1D3VA 4Q3SA 2A0MA 2EF5A 4Q3PA 3Q9BA 5HJ9A 1GQ7A 4Q41A 4LY1A 1WVAA 3RQDA 3M1RA 3SKKA 5THTA 2GH6A 1T4TA 5EFKB 5FCWA 4MYNA 3E9BA 5G11A 4DZ4A 4ZUNA 1C3RA 1P8OA 3C0ZA 4ZUPA 5BWZA 4IXVA 4BZ8A 4Q3VA 1P8RA 3C0YA 2RLAA 3EZPA
chains in the Genus database with same CATH topology
3SFFA 5ICNB 1T64A 4CBYA 5EEFA 2VQWG 3MENA 5G1CA 5DC5A 5THSA 4QA0A 5G0YA 4QA6A 2V5WA 5EFNA 4ZUMA 4QA1A 1C3PA 5LI3A 5EFGA 2VQJA 4BZ6A 4BKXB 4QA5A 3ZNSA 4RN2A 4QA4A 3EWFA 5EENA 5G12A 4A69A 3EW8A 5G3WA 5EFBD 4CQFA 1T67A 1ZZ1A 2V5XA 5D1CA 3Q9EA 5EEKA 1ZZ3A 3MZ7A 5G0JA 5IWGA 5EEMA 5EEIA 5EFJD 4BZ7A 4ZUQA 2VQQA 3F0RA 5G0GA 3F07A 5G1AA 4CBTA 1T69A 4BZ9A 3F06A 5D1BA 3SFHA 5A2SA 4ZUOA 5G1BA 5IX0A 2VQOA 4ZURA 4LXZA 3MZ3A 5DC6A 5EF7A 5DC8A 3Q9CA 3EZTA 5G17A 5FUEA 5G0IA 1C3SA 1ZZ0A 4QA2A 5EF8A 5G0HA 5DC7A 3ZNRA 5G10A 3MZ6A 5EFHA 4BZ5A 2VCGA 1W22A 2VQVA 5THUA 5G13A 5JI5A 1VKGA 3MAXA 4RN1A 5D1DA 4QA3A 5G0XA 2VQMA 3C10A 5THVA 4QA7A 4RN0A 3MZ4A 3Q9FA 3Q9BA 4LY1A 3RQDA 5THTA 2GH6A 5EFKB 5FCWA 5G11A 4ZUNA 1C3RA 3C0ZA 4ZUPA 5BWZA 4BZ8A 3C0YA 3EZPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SFF A;  5ICN B;  1T64 A;  4CBY A;  5EEF A;  2VQW G;  3MEN A;  5G1C A;  5DC5 A;  5THS A;  4QA0 A;  5G0Y A;  4QA6 A;  2V5W A;  5EFN A;  4ZUM A;  4QA1 A;  1C3P A;  5LI3 A;  5EFG A;  2VQJ A;  4BZ6 A;  4BKX B;  4QA5 A;  3ZNS A;  4RN2 A;  4QA4 A;  3EWF A;  5EEN A;  5G12 A;  4A69 A;  3EW8 A;  5G3W A;  5EFB D;  4CQF A;  1T67 A;  1ZZ1 A;  2V5X A;  5D1C A;  3Q9E A;  5EEK A;  1ZZ3 A;  3MZ7 A;  5G0J A;  5IWG A;  5EEM A;  5EEI A;  5EFJ D;  4BZ7 A;  4ZUQ A;  2VQQ A;  3F0R A;  5G0G A;  3F07 A;  5G1A A;  4CBT A;  1T69 A;  4BZ9 A;  3F06 A;  5D1B A;  3SFH A;  5A2S A;  4ZUO A;  5G1B A;  5IX0 A;  2VQO A;  4ZUR A;  4LXZ A;  3MZ3 A;  5DC6 A;  5EF7 A;  5DC8 A;  3Q9C A;  3EZT A;  5G17 A;  5FUE A;  5G0I A;  1C3S A;  1ZZ0 A;  4QA2 A;  5EF8 A;  5G0H A;  5DC7 A;  3ZNR A;  5G10 A;  3MZ6 A;  5EFH A;  4BZ5 A;  2VCG A;  1W22 A;  2VQV A;  5THU A;  5G13 A;  5JI5 A;  1VKG A;  3MAX A;  4RN1 A;  5D1D A;  4QA3 A;  5G0X A;  2VQM A;  3C10 A;  5THV A;  4QA7 A;  4RN0 A;  3MZ4 A;  3Q9F A;  3Q9B A;  4LY1 A;  3RQD A;  5THT A;  2GH6 A;  5EFK B;  5FCW A;  5G11 A;  4ZUN A;  1C3R A;  3C0Z A;  4ZUP A;  5BWZ A;  4BZ8 A;  3C0Y A;  3EZP A; 
#chains in the Genus database with same CATH topology
 3NIO A;  4Q42 A;  3SFF A;  4RHQ A;  5RLA A;  3KV2 A;  1WVB A;  5ICN B;  1T64 A;  1P8M A;  4IXU A;  2PHO A;  5EEF A;  2VQW G;  2ZAV A;  3MEN A;  5G1C A;  4CBY A;  1R1O A;  4RHI A;  3LHL A;  4IE2 A;  1P8S A;  3NIQ A;  5DC5 A;  4ITY A;  1T4P A;  4FCK A;  5THS A;  1ZPG A;  4QA0 A;  1HQ5 A;  3E6K A;  4MXR A;  5G0Y A;  4QA6 A;  4Q3U A;  2V5W A;  5EFN A;  4ZUM A;  4QA1 A;  1C3P A;  4G3H A;  1HQG A;  2EIV A;  3GMZ A;  5LI3 A;  3SL0 A;  2PLL A;  5EFG A;  3GN0 A;  1WOH A;  2VQJ A;  3THJ A;  4BZ6 A;  4BKX B;  4IU4 A;  4QA5 A;  1P8N A;  3TH7 A;  1RLA A;  3ZNS A;  1WOG A;  3NIP A;  4RN2 A;  3E8Q A;  2AEB A;  4I06 A;  4QA4 A;  3EWF A;  5EEN A;  4Q3T A;  5G12 A;  5HJA A;  4A69 A;  4GSM A;  3EW8 A;  3MFV A;  5G3W A;  5EFB D;  4CQF A;  1T67 A;  1ZZ1 A;  2PHA A;  2V5X A;  3THH A;  4HXQ A;  4RHK A;  5D1C A;  3Q9E A;  5EEK A;  4IE3 A;  3RLA A;  1ZZ3 A;  1XFK A;  1P8P A;  3MZ7 A;  3E6V A;  5G0J A;  5IWG A;  3LP7 A;  5EEM A;  5EEI A;  5EFJ D;  4BZ7 A;  3SJT A;  4ZUQ A;  1P8Q A;  2VQQ A;  3DJ8 A;  1HQH A;  3F0R A;  4GWD A;  1HQF A;  3E8Z A;  4MYF A;  4Q40 A;  3F07 A;  3CEV A;  5G1A A;  4CBT A;  1T69 A;  1T5F A;  4BZ9 A;  1T4R A;  4RLA A;  3F06 A;  1PQ3 A;  3MFW A;  5D1B A;  1CEV A;  1WOI A;  3SFH A;  5A2S A;  4IU0 A;  4ZUO A;  4GWC A;  5G1B A;  5IX0 A;  1TA1 A;  2VQO A;  4ZUR A;  4Q3R A;  4LXZ A;  3MZ3 A;  5DC6 A;  5EF7 A;  3MMR A;  5DC8 A;  3MJL A;  3Q9C A;  1ZPE A;  5CEV A;  4RHM A;  3TF3 A;  2EF4 A;  3EZT A;  4CEV A;  1TBH A;  5G17 A;  1T4S A;  1GQ6 A;  5FUE A;  4Q3R C;  3LP4 A;  5G0I A;  1C3S A;  1ZZ0 A;  4HWW A;  4IE1 A;  4QA2 A;  5EF8 A;  2CEV A;  3F80 A;  1TBJ A;  1HQX A;  4FCI A;  4HZE A;  5G0H A;  5DC7 A;  4IU1 A;  3ZNR A;  5G10 A;  3MZ6 A;  5EFH A;  4BZ5 A;  2VCG A;  5G0G A;  1W22 A;  2VQV A;  4Q3Q A;  5THU A;  4RHL A;  5G13 A;  5JI5 A;  1VKG A;  3MAX A;  3PZL A;  4RN1 A;  5D1D A;  4QA3 A;  4GSV A;  4RHJ A;  5G0X A;  2VQM A;  4MYK A;  4IU5 A;  1T5G A;  3C10 A;  5THV A;  4QA7 A;  4GSZ A;  4RN0 A;  1TBL A;  3SL1 A;  3THE A;  3MZ4 A;  4MYL A;  3Q9F A;  1D3V A;  4Q3S A;  2A0M A;  2EF5 A;  4Q3P A;  3Q9B A;  5HJ9 A;  1GQ7 A;  4Q41 A;  4LY1 A;  1WVA A;  3RQD A;  3M1R A;  3SKK A;  5THT A;  2GH6 A;  1T4T A;  5EFK B;  5FCW A;  4MYN A;  3E9B A;  5G11 A;  4DZ4 A;  4ZUN A;  1C3R A;  1P8O A;  3C0Z A;  4ZUP A;  5BWZ A;  4IXV A;  4BZ8 A;  4Q3V A;  1P8R A;  3C0Y A;  2RLA A;  3EZP A; 
#chains in the Genus database with same CATH homology
 3SFF A;  5ICN B;  1T64 A;  4CBY A;  5EEF A;  2VQW G;  3MEN A;  5G1C A;  5DC5 A;  5THS A;  4QA0 A;  5G0Y A;  4QA6 A;  2V5W A;  5EFN A;  4ZUM A;  4QA1 A;  1C3P A;  5LI3 A;  5EFG A;  2VQJ A;  4BZ6 A;  4BKX B;  4QA5 A;  3ZNS A;  4RN2 A;  4QA4 A;  3EWF A;  5EEN A;  5G12 A;  4A69 A;  3EW8 A;  5G3W A;  5EFB D;  4CQF A;  1T67 A;  1ZZ1 A;  2V5X A;  5D1C A;  3Q9E A;  5EEK A;  1ZZ3 A;  3MZ7 A;  5G0J A;  5IWG A;  5EEM A;  5EEI A;  5EFJ D;  4BZ7 A;  4ZUQ A;  2VQQ A;  3F0R A;  5G0G A;  3F07 A;  5G1A A;  4CBT A;  1T69 A;  4BZ9 A;  3F06 A;  5D1B A;  3SFH A;  5A2S A;  4ZUO A;  5G1B A;  5IX0 A;  2VQO A;  4ZUR A;  4LXZ A;  3MZ3 A;  5DC6 A;  5EF7 A;  5DC8 A;  3Q9C A;  3EZT A;  5G17 A;  5FUE A;  5G0I A;  1C3S A;  1ZZ0 A;  4QA2 A;  5EF8 A;  5G0H A;  5DC7 A;  3ZNR A;  5G10 A;  3MZ6 A;  5EFH A;  4BZ5 A;  2VCG A;  1W22 A;  2VQV A;  5THU A;  5G13 A;  5JI5 A;  1VKG A;  3MAX A;  4RN1 A;  5D1D A;  4QA3 A;  5G0X A;  2VQM A;  3C10 A;  5THV A;  4QA7 A;  4RN0 A;  3MZ4 A;  3Q9F A;  3Q9B A;  4LY1 A;  3RQD A;  5THT A;  2GH6 A;  5EFK B;  5FCW A;  5G11 A;  4ZUN A;  1C3R A;  3C0Z A;  4ZUP A;  5BWZ A;  4BZ8 A;  3C0Y A;  3EZP A; 
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