3MAXA

Crystal structure of human hdac2 complexed with an n-(2-aminophenyl)benzamide
Total Genus 144
50100150200250300350020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
144
sequence length
367
structure length
367
Chain Sequence
AKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRML
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (16-19)TI5 (144-147)TI1 (21-24)S7 (261-265)AH4 (92-99)TII1 (30-33)TIV7 (307-310)AH1 (37-50)AH10 (310-325)AH2 (66-70)AH3 (75-83)TIV1 (70-73)TI2 (85-88)TI4 (139-142)3H3 (89-91)TIV2 (102-105)TVIII1 (103-106)TII2 (108-111)AH5 (111-131)TIV3 (148-151)TI'1 (153-156)TVIII2 (134-137)AH6 (160-170)S3 (136-139)S4 (175-179)TVIII3 (172-175)AH9 (283-296)S5 (198-205)AH7 (186-192)O1 (184-186)AH8 (239-257)TI6 (192-195)TI7 (215-218)3H4 (222-224)TIV6 (267-270)S6 (228-233)TI8 (268-271)TI11 (343-346)TII4 (234-237)TI9 (274-277)S8 (300-303)3H5 (339-342)TII5 (271-274)TIV8 (342-345)3H1 (24-26)3H2 (52-54)S2 (57-59)TIV5 (206-209)TII3 (224-227)TI10 (336-339)TVIa1 (209-212)AH11 (361-376)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Homo sapiens
publication title Exploration of the HDAC2 foot pocket: Synthesis and SAR of substituted N-(2-aminophenyl)benzamides.
pubmed doi rcsb
molecule keywords Histone deacetylase 2
total genus 144
structure length 367
sequence length 367
chains with identical sequence B, C
ec nomenclature ec 3.5.1.98: Histone deacetylase.
pdb deposition date 2010-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 3maxA00
4ZUNA 4ZUOA 3MZ4A 5G0HA 3C0YA 3F07A 5DC6A 5DC7A 1ZZ3A 5G0XA 4BZ5A 5THVA 5G17A 1T67A 5DC8A 4QA4A 5EEKA 4QA6A 4LXZA 3MAXA 5EEMA 4QA3A 5FUEA 3MZ7A 4CQFA 1C3RA 5G0YA 3EZPA 1T69A 5THTA 5G0IA 5THUA 4ZUPA 3Q9EA 4LY1A 4RN0A 4QA1A 5EEFA 3F06A 5IX0A 2VQOA 4ZURA 3MENA 4BZ7A 3F0RA 4CBTA 5EF7A 2VQQA 5EFBD 3EZTA 5G10A 4BZ8A 5G12A 5EFKB 5D1BA 5EFGA 4QA7A 3MZ3A 2VQMA 5G11A 5FCWA 3ZNRA 4BZ6A 5THSA 5DC5A 5JI5A 3SFFA 3C0ZA 5EEIA 4ZUQA 1ZZ1A 5EF8A 5IWGA 2VCGA 3EWFA 3C10A 3RQDA 3Q9BA 5A2SA 5ICNB 2GH6A 1ZZ0A 3Q9FA 2VQWG 5G0GA 5G3WA 3SFHA 4CBYA 4RN1A 5BWZA 4RN2A 5G1AA 3MZ6A 4A69A 2V5WA 5D1DA 5G1CA 4BZ9A 1W22A 5EENA 5LI3A 5EFNA 4ZUMA 3EW8A 1C3PA 5EFJD 2VQVA 5D1CA 5EFHA 3Q9CA 5G0JA 4BKXB 3ZNSA 5G13A 2V5XA 2VQJA 1VKGA 4QA2A 4QA0A 1T64A 4QA5A 1C3SA 5G1BA
chains in the Genus database with same CATH superfamily
4ZUNA 1T4TA 4IE2A 5HJ9A 4ZUOA 4G3HA 4IU1A 3MZ4A 3THJA 1TA1A 1T5FA 5G0HA 3C0YA 4CEVA 3F07A 1P8RA 4RHJA 5DC7A 4RHMA 1ZZ3A 3GN0A 5DC6A 2PLLA 5G0XA 4BZ5A 5THVA 1PQ3A 4IE1A 5G17A 1T67A 1TBJA 5DC8A 1P8NA 4HZEA 3LP7A 4Q3UA 1GQ6A 3E8QA 4Q3VA 1ZPEA 4QA4A 4MYKA 1TBHA 3THHA 5EEKA 2EF4A 4HWWA 4QA6A 3TF3A 4LXZA 3MAXA 4RHQA 3KV2A 1WVBA 4GSMA 1P8PA 4I06A 1HQ5A 5EEMA 4QA3A 3SL1A 4IU0A 3TH7A 5FUEA 3MZ7A 4CQFA 2A0MA 1C3RA 5G0YA 1D3VA 3EZPA 1T69A 5THTA 5G0IA 5THUA 1XFKA 4IXUA 4Q42A 4ZUPA 3Q9EA 3MMRA 4LY1A 1WOGA 3MFWA 4RN0A 4QA1A 4RHIA 5EEFA 3F06A 5IX0A 4DZ4A 2VQOA 4FCIA 4ZURA 4RHKA 3MENA 1GQ7A 2PHOA 3NIPA 3F0RA 4IU5A 4BZ7A 4CBTA 1P8SA 4MYNA 5EF7A 2VQQA 4MYLA 5EFBD 3EZTA 1P8OA 1P8QA 5G10A 4BZ8A 4IU4A 1T4SA 5G12A 1HQGA 5EFKB 5HJAA 3RLAA 2EF5A 5D1BA 5EFGA 2CEVA 3SJTA 4GSVA 4Q3TA 4QA7A 4RHLA 3MZ3A 2VQMA 5G11A 3LP4A 5FCWA 3ZNRA 4ITYA 2PHAA 4Q41A 5CEVA 4BZ6A 5THSA 3E9BA 1T4PA 4Q3SA 4Q40A 5DC5A 1T4RA 5JI5A 1P8MA 3CEVA 3SFFA 3F80A 3C0ZA 4HXQA 5EEIA 4ZUQA 1ZZ1A 5EF8A 5IWGA 2VCGA 3EWFA 4IXVA 3C10A 4Q3RC 3RQDA 3Q9BA 5A2SA 5ICNB 1ZPGA 3E6KA 3SL0A 3E8ZA 2GH6A 4Q3QA 4GWDA 3SKKA 1ZZ0A 3Q9FA 1RLAA 2VQWG 3GMZA 5G0GA 5G3WA 5G1BA 4RN1A 3SFHA 4CBYA 4RN2A 5BWZA 1TBLA 2AEBA 4FCKA 4RLAA 1HQXA 1WVAA 3MZ6A 5G1AA 3E6VA 2V5WA 2ZAVA 5D1DA 4A69A 5G1CA 1HQHA 3NIOA 2EIVA 2RLAA 3M1RA 3DJ8A 4BZ9A 1CEVA 1W22A 5EENA 3MFVA 5EFNA 3PZLA 4ZUMA 5LI3A 3EW8A 4Q3RA 1C3PA 4GWCA 4IE3A 5EFJD 3NIQA 3THEA 1WOIA 2VQVA 5RLAA 3LHLA 5D1CA 5EFHA 4MXRA 3Q9CA 5G0JA 4BKXB 3ZNSA 4Q3PA 5G13A 2V5XA 2VQJA 1R1OA 1VKGA 4QA2A 4GSZA 1WOHA 4QA0A 1T64A 3MJLA 4QA5A 1C3SA 1HQFA 4MYFA 1T5GA
chains in the Genus database with same CATH topology
4ZUNA 4ZUOA 3MZ4A 5G0HA 3C0YA 3F07A 5DC6A 5DC7A 1ZZ3A 5G0XA 4BZ5A 5THVA 5G17A 1T67A 5DC8A 4QA4A 5EEKA 4QA6A 4LXZA 3MAXA 5EEMA 4QA3A 5FUEA 3MZ7A 4CQFA 1C3RA 5G0YA 3EZPA 1T69A 5THTA 5G0IA 5THUA 4ZUPA 3Q9EA 4LY1A 4RN0A 4QA1A 5EEFA 3F06A 5IX0A 2VQOA 4ZURA 3MENA 4BZ7A 3F0RA 4CBTA 5EF7A 2VQQA 5EFBD 3EZTA 5G10A 4BZ8A 5G12A 5EFKB 5D1BA 5EFGA 4QA7A 3MZ3A 2VQMA 5G11A 5FCWA 3ZNRA 4BZ6A 5THSA 5DC5A 5JI5A 3SFFA 3C0ZA 5EEIA 4ZUQA 1ZZ1A 5EF8A 5IWGA 2VCGA 3EWFA 3C10A 3RQDA 3Q9BA 5A2SA 5ICNB 2GH6A 1ZZ0A 3Q9FA 2VQWG 5G0GA 5G3WA 3SFHA 4CBYA 4RN1A 5BWZA 4RN2A 5G1AA 3MZ6A 4A69A 2V5WA 5D1DA 5G1CA 4BZ9A 1W22A 5EENA 5LI3A 5EFNA 4ZUMA 3EW8A 1C3PA 5EFJD 2VQVA 5D1CA 5EFHA 3Q9CA 5G0JA 4BKXB 3ZNSA 5G13A 2V5XA 2VQJA 1VKGA 4QA2A 4QA0A 1T64A 4QA5A 1C3SA 5G1BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZUN A;  4ZUO A;  3MZ4 A;  5G0H A;  3C0Y A;  3F07 A;  5DC6 A;  5DC7 A;  1ZZ3 A;  5G0X A;  4BZ5 A;  5THV A;  5G17 A;  1T67 A;  5DC8 A;  4QA4 A;  5EEK A;  4QA6 A;  4LXZ A;  3MAX A;  5EEM A;  4QA3 A;  5FUE A;  3MZ7 A;  4CQF A;  1C3R A;  5G0Y A;  3EZP A;  1T69 A;  5THT A;  5G0I A;  5THU A;  4ZUP A;  3Q9E A;  4LY1 A;  4RN0 A;  4QA1 A;  5EEF A;  3F06 A;  5IX0 A;  2VQO A;  4ZUR A;  3MEN A;  4BZ7 A;  3F0R A;  4CBT A;  5EF7 A;  2VQQ A;  5EFB D;  3EZT A;  5G10 A;  4BZ8 A;  5G12 A;  5EFK B;  5D1B A;  5EFG A;  4QA7 A;  3MZ3 A;  2VQM A;  5G11 A;  5FCW A;  3ZNR A;  4BZ6 A;  5THS A;  5DC5 A;  5JI5 A;  3SFF A;  3C0Z A;  5EEI A;  4ZUQ A;  1ZZ1 A;  5EF8 A;  5IWG A;  2VCG A;  3EWF A;  3C10 A;  3RQD A;  3Q9B A;  5A2S A;  5ICN B;  2GH6 A;  1ZZ0 A;  3Q9F A;  2VQW G;  5G0G A;  5G3W A;  3SFH A;  4CBY A;  4RN1 A;  5BWZ A;  4RN2 A;  5G1A A;  3MZ6 A;  4A69 A;  2V5W A;  5D1D A;  5G1C A;  4BZ9 A;  1W22 A;  5EEN A;  5LI3 A;  5EFN A;  4ZUM A;  3EW8 A;  1C3P A;  5EFJ D;  2VQV A;  5D1C A;  5EFH A;  3Q9C A;  5G0J A;  4BKX B;  3ZNS A;  5G13 A;  2V5X A;  2VQJ A;  1VKG A;  4QA2 A;  4QA0 A;  1T64 A;  4QA5 A;  1C3S A;  5G1B A; 
#chains in the Genus database with same CATH topology
 4ZUN A;  1T4T A;  4IE2 A;  5HJ9 A;  4ZUO A;  4G3H A;  4IU1 A;  3MZ4 A;  3THJ A;  1TA1 A;  1T5F A;  5G0H A;  3C0Y A;  4CEV A;  3F07 A;  1P8R A;  4RHJ A;  5DC7 A;  4RHM A;  1ZZ3 A;  3GN0 A;  5DC6 A;  2PLL A;  5G0X A;  4BZ5 A;  5THV A;  1PQ3 A;  4IE1 A;  5G17 A;  1T67 A;  1TBJ A;  5DC8 A;  1P8N A;  4HZE A;  3LP7 A;  4Q3U A;  1GQ6 A;  3E8Q A;  4Q3V A;  1ZPE A;  4QA4 A;  4MYK A;  1TBH A;  3THH A;  5EEK A;  2EF4 A;  4HWW A;  4QA6 A;  3TF3 A;  4LXZ A;  3MAX A;  4RHQ A;  3KV2 A;  1WVB A;  4GSM A;  1P8P A;  4I06 A;  1HQ5 A;  5EEM A;  4QA3 A;  3SL1 A;  4IU0 A;  3TH7 A;  5FUE A;  3MZ7 A;  4CQF A;  2A0M A;  1C3R A;  5G0Y A;  1D3V A;  3EZP A;  1T69 A;  5THT A;  5G0I A;  5THU A;  1XFK A;  4IXU A;  4Q42 A;  4ZUP A;  3Q9E A;  3MMR A;  4LY1 A;  1WOG A;  3MFW A;  4RN0 A;  4QA1 A;  4RHI A;  5EEF A;  3F06 A;  5IX0 A;  4DZ4 A;  2VQO A;  4FCI A;  4ZUR A;  4RHK A;  3MEN A;  1GQ7 A;  2PHO A;  3NIP A;  3F0R A;  4IU5 A;  4BZ7 A;  4CBT A;  1P8S A;  4MYN A;  5EF7 A;  2VQQ A;  4MYL A;  5EFB D;  3EZT A;  1P8O A;  1P8Q A;  5G10 A;  4BZ8 A;  4IU4 A;  1T4S A;  5G12 A;  1HQG A;  5EFK B;  5HJA A;  3RLA A;  2EF5 A;  5D1B A;  5EFG A;  2CEV A;  3SJT A;  4GSV A;  4Q3T A;  4QA7 A;  4RHL A;  3MZ3 A;  2VQM A;  5G11 A;  3LP4 A;  5FCW A;  3ZNR A;  4ITY A;  2PHA A;  4Q41 A;  5CEV A;  4BZ6 A;  5THS A;  3E9B A;  1T4P A;  4Q3S A;  4Q40 A;  5DC5 A;  1T4R A;  5JI5 A;  1P8M A;  3CEV A;  3SFF A;  3F80 A;  3C0Z A;  4HXQ A;  5EEI A;  4ZUQ A;  1ZZ1 A;  5EF8 A;  5IWG A;  2VCG A;  3EWF A;  4IXV A;  3C10 A;  4Q3R C;  3RQD A;  3Q9B A;  5A2S A;  5ICN B;  1ZPG A;  3E6K A;  3SL0 A;  3E8Z A;  2GH6 A;  4Q3Q A;  4GWD A;  3SKK A;  1ZZ0 A;  3Q9F A;  1RLA A;  2VQW G;  3GMZ A;  5G0G A;  5G3W A;  5G1B A;  4RN1 A;  3SFH A;  4CBY A;  4RN2 A;  5BWZ A;  1TBL A;  2AEB A;  4FCK A;  4RLA A;  1HQX A;  1WVA A;  3MZ6 A;  5G1A A;  3E6V A;  2V5W A;  2ZAV A;  5D1D A;  4A69 A;  5G1C A;  1HQH A;  3NIO A;  2EIV A;  2RLA A;  3M1R A;  3DJ8 A;  4BZ9 A;  1CEV A;  1W22 A;  5EEN A;  3MFV A;  5EFN A;  3PZL A;  4ZUM A;  5LI3 A;  3EW8 A;  4Q3R A;  1C3P A;  4GWC A;  4IE3 A;  5EFJ D;  3NIQ A;  3THE A;  1WOI A;  2VQV A;  5RLA A;  3LHL A;  5D1C A;  5EFH A;  4MXR A;  3Q9C A;  5G0J A;  4BKX B;  3ZNS A;  4Q3P A;  5G13 A;  2V5X A;  2VQJ A;  1R1O A;  1VKG A;  4QA2 A;  4GSZ A;  1WOH A;  4QA0 A;  1T64 A;  3MJL A;  4QA5 A;  1C3S A;  1HQF A;  4MYF A;  1T5G A; 
#chains in the Genus database with same CATH homology
 4ZUN A;  4ZUO A;  3MZ4 A;  5G0H A;  3C0Y A;  3F07 A;  5DC6 A;  5DC7 A;  1ZZ3 A;  5G0X A;  4BZ5 A;  5THV A;  5G17 A;  1T67 A;  5DC8 A;  4QA4 A;  5EEK A;  4QA6 A;  4LXZ A;  3MAX A;  5EEM A;  4QA3 A;  5FUE A;  3MZ7 A;  4CQF A;  1C3R A;  5G0Y A;  3EZP A;  1T69 A;  5THT A;  5G0I A;  5THU A;  4ZUP A;  3Q9E A;  4LY1 A;  4RN0 A;  4QA1 A;  5EEF A;  3F06 A;  5IX0 A;  2VQO A;  4ZUR A;  3MEN A;  4BZ7 A;  3F0R A;  4CBT A;  5EF7 A;  2VQQ A;  5EFB D;  3EZT A;  5G10 A;  4BZ8 A;  5G12 A;  5EFK B;  5D1B A;  5EFG A;  4QA7 A;  3MZ3 A;  2VQM A;  5G11 A;  5FCW A;  3ZNR A;  4BZ6 A;  5THS A;  5DC5 A;  5JI5 A;  3SFF A;  3C0Z A;  5EEI A;  4ZUQ A;  1ZZ1 A;  5EF8 A;  5IWG A;  2VCG A;  3EWF A;  3C10 A;  3RQD A;  3Q9B A;  5A2S A;  5ICN B;  2GH6 A;  1ZZ0 A;  3Q9F A;  2VQW G;  5G0G A;  5G3W A;  3SFH A;  4CBY A;  4RN1 A;  5BWZ A;  4RN2 A;  5G1A A;  3MZ6 A;  4A69 A;  2V5W A;  5D1D A;  5G1C A;  4BZ9 A;  1W22 A;  5EEN A;  5LI3 A;  5EFN A;  4ZUM A;  3EW8 A;  1C3P A;  5EFJ D;  2VQV A;  5D1C A;  5EFH A;  3Q9C A;  5G0J A;  4BKX B;  3ZNS A;  5G13 A;  2V5X A;  2VQJ A;  1VKG A;  4QA2 A;  4QA0 A;  1T64 A;  4QA5 A;  1C3S A;  5G1B A; 
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