3MJL | Genus

Total Genus 115

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	115
sequence length	314
structure length	314
Chain Sequence	RTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKEQECDVKDYGDLPFADIPNDSPFQIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAITLACFGLAREGNHKPIDYLN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Homo sapiens
publication title	Crystal structure of human arginase I in complex with 2-aminoimidazole. Resolution 1.90 A. rcsb
molecule keywords	Arginase-1
total genus	115
structure length	314
sequence length	314
chains with identical sequence	B
ec nomenclature	ec 3.5.3.1: Arginase.
pdb deposition date	2010-04-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00491	Arginase	Arginase family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.800.10	Alpha Beta	3-Layer(aba) Sandwich	Arginase; Chain A	Ureohydrolase domain	3mjlA00

4Q3RC 1P8OA 1T4RA 4RHKA 3THHA 1D3VA 2AEBA 4RHIA 3E8ZA 1P8PA 1ZPEA 2A0MA 4Q40A 1P8QA 3GN0A 1T5FA 4FCIA 3PZLA 3E6KA 4IE3A 1XFKA 4IXVA 1WOHA 1HQ5A 3CEVA 1T4TA 2PHAA 4Q41A 4IU0A 3M1RA 3KV2A 2CEVA 4DZ4A 1RLAA 4GSVA 4GSZA 1WOGA 4I06A 2EF5A 4MYLA 3SJTA 4IU1A 1HQFA 3LP4A 1WVBA 2PHOA 4Q3TA 1TA1A 4HWWA 4IU4A 1HQHA 2PLLA 1ZPGA 2ZAVA 3RLAA 5HJ9A 4HXQA 4MYKA 4IE2A 2EF4A 4MXRA 4HZEA 1P8RA 4RHJA 1T5GA 1P8NA 3MFWA 4RHMA 4CEVA 1CEVA 1WVAA 4FCKA 4RHQA 3E6VA 1P8SA 3TF3A 3NIQA 2RLAA 5HJAA 1GQ7A 4IXUA 4IU5A 5RLAA 3THEA 3DJ8A 1HQXA 4Q3RA 4GWDA 1P8MA 4Q3UA 3GMZA 4Q3QA 1R1OA 3E9BA 4G3HA 4Q3PA 1TBJA 4Q3VA 2EIVA 4RHLA 3SL0A 4Q3SA 1TBHA 3NIPA 3MMRA 3NIOA 4Q42A 4IE1A 1T4SA 3LHLA 3SL1A 3MJLA 3THJA 1PQ3A 3F80A 4GSMA 3SKKA 5CEVA 3TH7A 3LP7A 1HQGA 4MYNA 4GWCA 1TBLA 1GQ6A 1WOIA 4MYFA 4ITYA 1T4PA 3MFVA 4RLAA 3E8QA
chains in the Genus database with same CATH superfamily

4Q3RC 5EF7A 4BZ9A 2VCGA 5EFGA 3C10A 1P8OA 1T4RA 5THSA 5ICNB 4RHKA 1T64A 4A69A 3THHA 5D1DA 5FUEA 1D3VA 2AEBA 3SFHA 4RHIA 5G10A 3E8ZA 1P8PA 3Q9BA 4ZUMA 1ZPEA 1ZZ3A 3C0ZA 2A0MA 4QA1A 4Q40A 5THUA 1P8QA 3GN0A 5G12A 1T5FA 4FCIA 5LI3A 5EEMA 3PZLA 3E6KA 4QA7A 4IE3A 1XFKA 3MZ6A 4IXVA 1WOHA 5EFNA 1HQ5A 3CEVA 1T4TA 2PHAA 4Q41A 5EENA 4IU0A 5G13A 2GH6A 3M1RA 3KV2A 4QA2A 2CEVA 4DZ4A 1RLAA 4GSVA 4GSZA 5G1CA 5THTA 1WOGA 1C3RA 3EW8A 2V5WA 4I06A 2EF5A 4RN0A 4MYLA 3SJTA 4QA6A 4BZ8A 5IWGA 4RN2A 5D1CA 2VQWG 5EFBD 4IU1A 5G11A 5BWZA 1HQFA 1C3SA 3ZNRA 5D1BA 4LY1A 5EFKB 3LP4A 5G0XA 3Q9EA 3MZ3A 2VQOA 5THVA 1WVBA 2PHOA 4Q3TA 1TA1A 4HWWA 4IU4A 1HQHA 3Q9FA 2PLLA 5DC8A 3EZTA 4ZUPA 3MZ4A 1ZPGA 2ZAVA 3MAXA 1ZZ0A 5HJ9A 3RLAA 4HXQA 4MYKA 4IE2A 2EF4A 4MXRA 5G1AA 4HZEA 4CBYA 1P8RA 4RHJA 1T5GA 4QA5A 5EEFA 5A2SA 1P8NA 4QA4A 4LXZA 3MFWA 4RHMA 3RQDA 4CBTA 4CEVA 1CEVA 5FCWA 1WVAA 4ZURA 4FCKA 4RHQA 3E6VA 5EEIA 4BZ5A 5G0HA 3F07A 3F06A 4RN1A 1P8SA 3TF3A 3NIQA 3EZPA 4BZ6A 1W22A 1VKGA 4BKXB 1T69A 2RLAA 5HJAA 1GQ7A 5G1BA 4IXUA 4IU5A 5RLAA 3THEA 3C0YA 3MENA 3DJ8A 5EEKA 1HQXA 2V5XA 4GWDA 1P8MA 4Q3RA 4QA0A 4Q3UA 3GMZA 4Q3QA 1ZZ1A 3SFFA 3Q9CA 2VQMA 3MZ7A 1R1OA 3E9BA 4G3HA 4Q3PA 5EFJD 1TBJA 4Q3VA 5DC6A 4QA3A 2EIVA 5JI5A 5G0GA 4ZUQA 4RHLA 3SL0A 4Q3SA 5G0JA 1TBHA 3NIPA 5DC7A 2VQQA 5G17A 3MMRA 3NIOA 5G0IA 4Q42A 3EWFA 5G3WA 4IE1A 1C3PA 4ZUOA 1T4SA 3LHLA 3SL1A 3ZNSA 3MJLA 3THJA 1PQ3A 4ZUNA 5G0YA 3F80A 4GSMA 5EF8A 3SKKA 3TH7A 3F0RA 5CEVA 3LP7A 1HQGA 2VQJA 4MYNA 5IX0A 4BZ7A 1T67A 4GWCA 2VQVA 1TBLA 1GQ6A 5DC5A 1WOIA 4MYFA 4ITYA 1T4PA 3MFVA 4RLAA 4CQFA 3E8QA 5EFHA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4Q3R C;  1P8O A;  1T4R A;  4RHK A;  3THH A;  1D3V A;  2AEB A;  4RHI A;  3E8Z A;  1P8P A;  1ZPE A;  2A0M A;  4Q40 A;  1P8Q A;  3GN0 A;  1T5F A;  4FCI A;  3PZL A;  3E6K A;  4IE3 A;  1XFK A;  4IXV A;  1WOH A;  1HQ5 A;  3CEV A;  1T4T A;  2PHA A;  4Q41 A;  4IU0 A;  3M1R A;  3KV2 A;  2CEV A;  4DZ4 A;  1RLA A;  4GSV A;  4GSZ A;  1WOG A;  4I06 A;  2EF5 A;  4MYL A;  3SJT A;  4IU1 A;  1HQF A;  3LP4 A;  1WVB A;  2PHO A;  4Q3T A;  1TA1 A;  4HWW A;  4IU4 A;  1HQH A;  2PLL A;  1ZPG A;  2ZAV A;  3RLA A;  5HJ9 A;  4HXQ A;  4MYK A;  4IE2 A;  2EF4 A;  4MXR A;  4HZE A;  1P8R A;  4RHJ A;  1T5G A;  1P8N A;  3MFW A;  4RHM A;  4CEV A;  1CEV A;  1WVA A;  4FCK A;  4RHQ A;  3E6V A;  1P8S A;  3TF3 A;  3NIQ A;  2RLA A;  5HJA A;  1GQ7 A;  4IXU A;  4IU5 A;  5RLA A;  3THE A;  3DJ8 A;  1HQX A;  4Q3R A;  4GWD A;  1P8M A;  4Q3U A;  3GMZ A;  4Q3Q A;  1R1O A;  3E9B A;  4G3H A;  4Q3P A;  1TBJ A;  4Q3V A;  2EIV A;  4RHL A;  3SL0 A;  4Q3S A;  1TBH A;  3NIP A;  3MMR A;  3NIO A;  4Q42 A;  4IE1 A;  1T4S A;  3LHL A;  3SL1 A;  3MJL A;  3THJ A;  1PQ3 A;  3F80 A;  4GSM A;  3SKK A;  5CEV A;  3TH7 A;  3LP7 A;  1HQG A;  4MYN A;  4GWC A;  1TBL A;  1GQ6 A;  1WOI A;  4MYF A;  4ITY A;  1T4P A;  3MFV A;  4RLA A;  3E8Q A; 
#chains in the Genus database with same CATH topology
 4Q3R C;  5EF7 A;  4BZ9 A;  2VCG A;  5EFG A;  3C10 A;  1P8O A;  1T4R A;  5THS A;  5ICN B;  4RHK A;  1T64 A;  4A69 A;  3THH A;  5D1D A;  5FUE A;  1D3V A;  2AEB A;  3SFH A;  4RHI A;  5G10 A;  3E8Z A;  1P8P A;  3Q9B A;  4ZUM A;  1ZPE A;  1ZZ3 A;  3C0Z A;  2A0M A;  4QA1 A;  4Q40 A;  5THU A;  1P8Q A;  3GN0 A;  5G12 A;  1T5F A;  4FCI A;  5LI3 A;  5EEM A;  3PZL A;  3E6K A;  4QA7 A;  4IE3 A;  1XFK A;  3MZ6 A;  4IXV A;  1WOH A;  5EFN A;  1HQ5 A;  3CEV A;  1T4T A;  2PHA A;  4Q41 A;  5EEN A;  4IU0 A;  5G13 A;  2GH6 A;  3M1R A;  3KV2 A;  4QA2 A;  2CEV A;  4DZ4 A;  1RLA A;  4GSV A;  4GSZ A;  5G1C A;  5THT A;  1WOG A;  1C3R A;  3EW8 A;  2V5W A;  4I06 A;  2EF5 A;  4RN0 A;  4MYL A;  3SJT A;  4QA6 A;  4BZ8 A;  5IWG A;  4RN2 A;  5D1C A;  2VQW G;  5EFB D;  4IU1 A;  5G11 A;  5BWZ A;  1HQF A;  1C3S A;  3ZNR A;  5D1B A;  4LY1 A;  5EFK B;  3LP4 A;  5G0X A;  3Q9E A;  3MZ3 A;  2VQO A;  5THV A;  1WVB A;  2PHO A;  4Q3T A;  1TA1 A;  4HWW A;  4IU4 A;  1HQH A;  3Q9F A;  2PLL A;  5DC8 A;  3EZT A;  4ZUP A;  3MZ4 A;  1ZPG A;  2ZAV A;  3MAX A;  1ZZ0 A;  5HJ9 A;  3RLA A;  4HXQ A;  4MYK A;  4IE2 A;  2EF4 A;  4MXR A;  5G1A A;  4HZE A;  4CBY A;  1P8R A;  4RHJ A;  1T5G A;  4QA5 A;  5EEF A;  5A2S A;  1P8N A;  4QA4 A;  4LXZ A;  3MFW A;  4RHM A;  3RQD A;  4CBT A;  4CEV A;  1CEV A;  5FCW A;  1WVA A;  4ZUR A;  4FCK A;  4RHQ A;  3E6V A;  5EEI A;  4BZ5 A;  5G0H A;  3F07 A;  3F06 A;  4RN1 A;  1P8S A;  3TF3 A;  3NIQ A;  3EZP A;  4BZ6 A;  1W22 A;  1VKG A;  4BKX B;  1T69 A;  2RLA A;  5HJA A;  1GQ7 A;  5G1B A;  4IXU A;  4IU5 A;  5RLA A;  3THE A;  3C0Y A;  3MEN A;  3DJ8 A;  5EEK A;  1HQX A;  2V5X A;  4GWD A;  1P8M A;  4Q3R A;  4QA0 A;  4Q3U A;  3GMZ A;  4Q3Q A;  1ZZ1 A;  3SFF A;  3Q9C A;  2VQM A;  3MZ7 A;  1R1O A;  3E9B A;  4G3H A;  4Q3P A;  5EFJ D;  1TBJ A;  4Q3V A;  5DC6 A;  4QA3 A;  2EIV A;  5JI5 A;  5G0G A;  4ZUQ A;  4RHL A;  3SL0 A;  4Q3S A;  5G0J A;  1TBH A;  3NIP A;  5DC7 A;  2VQQ A;  5G17 A;  3MMR A;  3NIO A;  5G0I A;  4Q42 A;  3EWF A;  5G3W A;  4IE1 A;  1C3P A;  4ZUO A;  1T4S A;  3LHL A;  3SL1 A;  3ZNS A;  3MJL A;  3THJ A;  1PQ3 A;  4ZUN A;  5G0Y A;  3F80 A;  4GSM A;  5EF8 A;  3SKK A;  3TH7 A;  3F0R A;  5CEV A;  3LP7 A;  1HQG A;  2VQJ A;  4MYN A;  5IX0 A;  4BZ7 A;  1T67 A;  4GWC A;  2VQV A;  1TBL A;  1GQ6 A;  5DC5 A;  1WOI A;  4MYF A;  4ITY A;  1T4P A;  3MFV A;  4RLA A;  4CQF A;  3E8Q A;  5EFH A; 
#chains in the Genus database with same CATH homology
 4Q3R C;  1P8O A;  1T4R A;  4RHK A;  3THH A;  1D3V A;  2AEB A;  4RHI A;  3E8Z A;  1P8P A;  1ZPE A;  2A0M A;  4Q40 A;  1P8Q A;  3GN0 A;  1T5F A;  4FCI A;  3PZL A;  3E6K A;  4IE3 A;  1XFK A;  4IXV A;  1WOH A;  1HQ5 A;  3CEV A;  1T4T A;  2PHA A;  4Q41 A;  4IU0 A;  3M1R A;  3KV2 A;  2CEV A;  4DZ4 A;  1RLA A;  4GSV A;  4GSZ A;  1WOG A;  4I06 A;  2EF5 A;  4MYL A;  3SJT A;  4IU1 A;  1HQF A;  3LP4 A;  1WVB A;  2PHO A;  4Q3T A;  1TA1 A;  4HWW A;  4IU4 A;  1HQH A;  2PLL A;  1ZPG A;  2ZAV A;  3RLA A;  5HJ9 A;  4HXQ A;  4MYK A;  4IE2 A;  2EF4 A;  4MXR A;  4HZE A;  1P8R A;  4RHJ A;  1T5G A;  1P8N A;  3MFW A;  4RHM A;  4CEV A;  1CEV A;  1WVA A;  4FCK A;  4RHQ A;  3E6V A;  1P8S A;  3TF3 A;  3NIQ A;  2RLA A;  5HJA A;  1GQ7 A;  4IXU A;  4IU5 A;  5RLA A;  3THE A;  3DJ8 A;  1HQX A;  4Q3R A;  4GWD A;  1P8M A;  4Q3U A;  3GMZ A;  4Q3Q A;  1R1O A;  3E9B A;  4G3H A;  4Q3P A;  1TBJ A;  4Q3V A;  2EIV A;  4RHL A;  3SL0 A;  4Q3S A;  1TBH A;  3NIP A;  3MMR A;  3NIO A;  4Q42 A;  4IE1 A;  1T4S A;  3LHL A;  3SL1 A;  3MJL A;  3THJ A;  1PQ3 A;  3F80 A;  4GSM A;  3SKK A;  5CEV A;  3TH7 A;  3LP7 A;  1HQG A;  4MYN A;  4GWC A;  1TBL A;  1GQ6 A;  1WOI A;  4MYF A;  4ITY A;  1T4P A;  3MFV A;  4RLA A;  3E8Q A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3MJLA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations