3NIQ | Genus

Total Genus 116

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	116
Knots found	KnotProt 2.0: S +3₁ +3₁ +3₁
sequence length	315
structure length	315
Chain Sequence	DHPQPLDAAEIPRFAGIPTFMRLPAFTDPAALQVGLIGVPWDGGTTNRAGARHGPREVRNLSSLMRKVHHVSRIAPYDLVRVGDLGDAPVNPIDLLDSLRRIEGFYRQVHAAGTLPLSVGGDHLVTLPIFRALGRERPLGMVHFDAHSDTNDRYFGDNPYTHGTPFRRAIEEGLLDPLRTVQIGIRGSVYSPDDDAFARECGIRVIHMEEFVELGVEATLAEARRVVGAGPTYVSFDVDVLDPAFAPGTGTPEIGGMTSLQAQQLVRGLRGLDLVGADVVEVSPPFDVGGATALVGATMMFELLCLLAESAARSA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 315 atoms

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315 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Pseudomonas aeruginosa
publication title	Crystal structures of Pseudomonas aeruginosa guanidinobutyrase and guanidinopropionase, members of the ureohydrolase superfamily pubmed doi rcsb
molecule keywords	3-guanidinopropionase
total genus	116
structure length	315
sequence length	315
chains with identical sequence	B
other databases	KnotProt 2.0: S +3₁ +3₁ +3₁
ec nomenclature	ec 3.5.3.17: Guanidinopropionase.
pdb deposition date	2010-06-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00491	Arginase	Arginase family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.800.10	Alpha Beta	3-Layer(aba) Sandwich	Arginase; Chain A	Ureohydrolase domain	3niqA00

3E6KA 4RHMA 3RLAA 4Q40A 2EF5A 4RHKA 3SJTA 1ZPGA 3GN0A 1TBLA 2CEVA 3E8QA 1P8MA 3MFWA 4Q3SA 3M1RA 1T5GA 1TBJA 4IE3A 4MYKA 1HQHA 1WOGA 1P8PA 4Q3QA 3LP4A 4IXUA 1GQ6A 1HQ5A 1RLAA 4GSVA 4I06A 4MYNA 2PHOA 1T4SA 4IU0A 2EF4A 4MYFA 4RHJA 3E9BA 4GWDA 4HXQA 3TF3A 3LHLA 2RLAA 1CEVA 4FCIA 1HQFA 1P8QA 4IE1A 3SL1A 4GSMA 3THHA 2EIVA 4GWCA 4Q3VA 4IU4A 1WVAA 2A0MA 1HQXA 4Q3TA 1WVBA 3PZLA 4Q41A 2PLLA 4IXVA 4MYLA 3NIOA 5HJAA 5CEVA 4G3HA 1T4TA 4IU1A 4RHIA 1T5FA 3LP7A 3GMZA 3NIPA 3THJA 1WOHA 3E6VA 4ITYA 1R1OA 4CEVA 1P8SA 4HZEA 4RHQA 3MJLA 3E8ZA 1HQGA 3KV2A 4Q3UA 1P8NA 4Q3RA 4DZ4A 3SL0A 2AEBA 3NIQA 1TBHA 1T4RA 4IU5A 1WOIA 2PHAA 1P8OA 4IE2A 2ZAVA 1D3VA 4RLAA 1T4PA 3TH7A 3MMRA 3SKKA 1TA1A 1PQ3A 3DJ8A 4Q3PA 5HJ9A 4RHLA 1GQ7A 3THEA 3F80A 1ZPEA 4GSZA 3CEVA 4HWWA 1XFKA 1P8RA 4FCKA 4MXRA 4Q42A 5RLAA 3MFVA 4Q3RC
chains in the Genus database with same CATH superfamily

3E6KA 3Q9CA 4RHMA 5G0GA 5G0IA 4Q40A 2EF5A 4RHKA 5G11A 3RLAA 3SJTA 5EEIA 1ZPGA 3MENA 4LY1A 5EF7A 3GN0A 2V5XA 1TBLA 2CEVA 3E8QA 3Q9BA 4RN2A 1P8MA 3MFWA 4Q3SA 3M1RA 5EENA 3F0RA 1T64A 1T5GA 1TBJA 4IE3A 4MYKA 1HQHA 5THSA 4ZUQA 1WOGA 1P8PA 4Q3QA 3LP4A 4IXUA 2VQMA 5DC5A 3MAXA 4ZUOA 4BZ7A 1GQ6A 1HQ5A 3RQDA 5EEKA 4RN0A 1C3SA 1RLAA 4GSVA 4I06A 3Q9FA 4MYNA 5D1BA 2PHOA 1T4SA 5THUA 4ZUNA 5DC6A 4CBTA 1ZZ3A 4QA7A 5G3WA 5EFNA 4IU0A 4BZ9A 2EF4A 4CBYA 4MYFA 4RHJA 4LXZA 3E9BA 4GWDA 4HXQA 3C10A 3TF3A 3LHLA 2RLAA 5G0HA 3Q9EA 5G1AA 5G17A 1CEVA 3EZTA 5FCWA 2VQQA 1HQFA 1P8QA 4FCIA 4IE1A 3SL1A 4GSMA 3THHA 2EIVA 3F06A 4GWCA 5EF8A 4Q3VA 4IU4A 3ZNRA 2VQVA 1WVAA 2A0MA 1HQXA 3ZNSA 5DC7A 5G12A 2GH6A 4Q3TA 5G0YA 1WVBA 3PZLA 5THTA 4QA2A 3SFFA 5A2SA 4Q41A 2PLLA 4IXVA 4MYLA 3NIOA 3EW8A 5HJAA 5CEVA 4G3HA 2V5WA 5EFHA 5EFKB 1T4TA 1C3PA 4IU1A 1T5FA 4RHIA 3LP7A 3GMZA 3NIPA 5DC8A 3THJA 4QA1A 1WOHA 3E6VA 4ITYA 5G1BA 5BWZA 4ZURA 1R1OA 5G10A 1ZZ1A 4CEVA 4ZUPA 5G1CA 3C0ZA 1P8SA 4BZ5A 4HZEA 5D1DA 5EEMA 4RHQA 3MJLA 2VQWG 3E8ZA 3C0YA 1HQGA 3KV2A 4Q3UA 1P8NA 5EEFA 4ZUMA 2VCGA 4Q3RA 5G0XA 5G0JA 4DZ4A 3MZ7A 3SL0A 2AEBA 1W22A 1TBHA 1T4RA 2VQOA 3NIQA 4IU5A 4RN1A 1WOIA 2PHAA 1P8OA 4IE2A 2ZAVA 5EFGA 4A69A 1VKGA 1D3VA 5IX0A 5FUEA 5JI5A 5LI3A 3MZ3A 4RLAA 1C3RA 1ZZ0A 3MZ6A 1T4PA 5G13A 3TH7A 3MMRA 2VQJA 4QA0A 4QA6A 3SKKA 1TA1A 4BZ6A 1PQ3A 3DJ8A 3F07A 3MZ4A 4CQFA 1T69A 4Q3PA 5HJ9A 4RHLA 5THVA 5EFBD 1GQ7A 5EFJD 3F80A 1ZPEA 3EWFA 5IWGA 3THEA 4BKXB 4GSZA 4QA4A 3CEVA 4HWWA 1T67A 1XFKA 1P8RA 4FCKA 4QA5A 5D1CA 3EZPA 4MXRA 4BZ8A 5ICNB 4Q42A 5RLAA 3SFHA 3MFVA 4Q3RC 4QA3A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3E6K A;  4RHM A;  3RLA A;  4Q40 A;  2EF5 A;  4RHK A;  3SJT A;  1ZPG A;  3GN0 A;  1TBL A;  2CEV A;  3E8Q A;  1P8M A;  3MFW A;  4Q3S A;  3M1R A;  1T5G A;  1TBJ A;  4IE3 A;  4MYK A;  1HQH A;  1WOG A;  1P8P A;  4Q3Q A;  3LP4 A;  4IXU A;  1GQ6 A;  1HQ5 A;  1RLA A;  4GSV A;  4I06 A;  4MYN A;  2PHO A;  1T4S A;  4IU0 A;  2EF4 A;  4MYF A;  4RHJ A;  3E9B A;  4GWD A;  4HXQ A;  3TF3 A;  3LHL A;  2RLA A;  1CEV A;  4FCI A;  1HQF A;  1P8Q A;  4IE1 A;  3SL1 A;  4GSM A;  3THH A;  2EIV A;  4GWC A;  4Q3V A;  4IU4 A;  1WVA A;  2A0M A;  1HQX A;  4Q3T A;  1WVB A;  3PZL A;  4Q41 A;  2PLL A;  4IXV A;  4MYL A;  3NIO A;  5HJA A;  5CEV A;  4G3H A;  1T4T A;  4IU1 A;  4RHI A;  1T5F A;  3LP7 A;  3GMZ A;  3NIP A;  3THJ A;  1WOH A;  3E6V A;  4ITY A;  1R1O A;  4CEV A;  1P8S A;  4HZE A;  4RHQ A;  3MJL A;  3E8Z A;  1HQG A;  3KV2 A;  4Q3U A;  1P8N A;  4Q3R A;  4DZ4 A;  3SL0 A;  2AEB A;  3NIQ A;  1TBH A;  1T4R A;  4IU5 A;  1WOI A;  2PHA A;  1P8O A;  4IE2 A;  2ZAV A;  1D3V A;  4RLA A;  1T4P A;  3TH7 A;  3MMR A;  3SKK A;  1TA1 A;  1PQ3 A;  3DJ8 A;  4Q3P A;  5HJ9 A;  4RHL A;  1GQ7 A;  3THE A;  3F80 A;  1ZPE A;  4GSZ A;  3CEV A;  4HWW A;  1XFK A;  1P8R A;  4FCK A;  4MXR A;  4Q42 A;  5RLA A;  3MFV A;  4Q3R C; 
#chains in the Genus database with same CATH topology
 3E6K A;  3Q9C A;  4RHM A;  5G0G A;  5G0I A;  4Q40 A;  2EF5 A;  4RHK A;  5G11 A;  3RLA A;  3SJT A;  5EEI A;  1ZPG A;  3MEN A;  4LY1 A;  5EF7 A;  3GN0 A;  2V5X A;  1TBL A;  2CEV A;  3E8Q A;  3Q9B A;  4RN2 A;  1P8M A;  3MFW A;  4Q3S A;  3M1R A;  5EEN A;  3F0R A;  1T64 A;  1T5G A;  1TBJ A;  4IE3 A;  4MYK A;  1HQH A;  5THS A;  4ZUQ A;  1WOG A;  1P8P A;  4Q3Q A;  3LP4 A;  4IXU A;  2VQM A;  5DC5 A;  3MAX A;  4ZUO A;  4BZ7 A;  1GQ6 A;  1HQ5 A;  3RQD A;  5EEK A;  4RN0 A;  1C3S A;  1RLA A;  4GSV A;  4I06 A;  3Q9F A;  4MYN A;  5D1B A;  2PHO A;  1T4S A;  5THU A;  4ZUN A;  5DC6 A;  4CBT A;  1ZZ3 A;  4QA7 A;  5G3W A;  5EFN A;  4IU0 A;  4BZ9 A;  2EF4 A;  4CBY A;  4MYF A;  4RHJ A;  4LXZ A;  3E9B A;  4GWD A;  4HXQ A;  3C10 A;  3TF3 A;  3LHL A;  2RLA A;  5G0H A;  3Q9E A;  5G1A A;  5G17 A;  1CEV A;  3EZT A;  5FCW A;  2VQQ A;  1HQF A;  1P8Q A;  4FCI A;  4IE1 A;  3SL1 A;  4GSM A;  3THH A;  2EIV A;  3F06 A;  4GWC A;  5EF8 A;  4Q3V A;  4IU4 A;  3ZNR A;  2VQV A;  1WVA A;  2A0M A;  1HQX A;  3ZNS A;  5DC7 A;  5G12 A;  2GH6 A;  4Q3T A;  5G0Y A;  1WVB A;  3PZL A;  5THT A;  4QA2 A;  3SFF A;  5A2S A;  4Q41 A;  2PLL A;  4IXV A;  4MYL A;  3NIO A;  3EW8 A;  5HJA A;  5CEV A;  4G3H A;  2V5W A;  5EFH A;  5EFK B;  1T4T A;  1C3P A;  4IU1 A;  1T5F A;  4RHI A;  3LP7 A;  3GMZ A;  3NIP A;  5DC8 A;  3THJ A;  4QA1 A;  1WOH A;  3E6V A;  4ITY A;  5G1B A;  5BWZ A;  4ZUR A;  1R1O A;  5G10 A;  1ZZ1 A;  4CEV A;  4ZUP A;  5G1C A;  3C0Z A;  1P8S A;  4BZ5 A;  4HZE A;  5D1D A;  5EEM A;  4RHQ A;  3MJL A;  2VQW G;  3E8Z A;  3C0Y A;  1HQG A;  3KV2 A;  4Q3U A;  1P8N A;  5EEF A;  4ZUM A;  2VCG A;  4Q3R A;  5G0X A;  5G0J A;  4DZ4 A;  3MZ7 A;  3SL0 A;  2AEB A;  1W22 A;  1TBH A;  1T4R A;  2VQO A;  3NIQ A;  4IU5 A;  4RN1 A;  1WOI A;  2PHA A;  1P8O A;  4IE2 A;  2ZAV A;  5EFG A;  4A69 A;  1VKG A;  1D3V A;  5IX0 A;  5FUE A;  5JI5 A;  5LI3 A;  3MZ3 A;  4RLA A;  1C3R A;  1ZZ0 A;  3MZ6 A;  1T4P A;  5G13 A;  3TH7 A;  3MMR A;  2VQJ A;  4QA0 A;  4QA6 A;  3SKK A;  1TA1 A;  4BZ6 A;  1PQ3 A;  3DJ8 A;  3F07 A;  3MZ4 A;  4CQF A;  1T69 A;  4Q3P A;  5HJ9 A;  4RHL A;  5THV A;  5EFB D;  1GQ7 A;  5EFJ D;  3F80 A;  1ZPE A;  3EWF A;  5IWG A;  3THE A;  4BKX B;  4GSZ A;  4QA4 A;  3CEV A;  4HWW A;  1T67 A;  1XFK A;  1P8R A;  4FCK A;  4QA5 A;  5D1C A;  3EZP A;  4MXR A;  4BZ8 A;  5ICN B;  4Q42 A;  5RLA A;  3SFH A;  3MFV A;  4Q3R C;  4QA3 A; 
#chains in the Genus database with same CATH homology
 3E6K A;  4RHM A;  3RLA A;  4Q40 A;  2EF5 A;  4RHK A;  3SJT A;  1ZPG A;  3GN0 A;  1TBL A;  2CEV A;  3E8Q A;  1P8M A;  3MFW A;  4Q3S A;  3M1R A;  1T5G A;  1TBJ A;  4IE3 A;  4MYK A;  1HQH A;  1WOG A;  1P8P A;  4Q3Q A;  3LP4 A;  4IXU A;  1GQ6 A;  1HQ5 A;  1RLA A;  4GSV A;  4I06 A;  4MYN A;  2PHO A;  1T4S A;  4IU0 A;  2EF4 A;  4MYF A;  4RHJ A;  3E9B A;  4GWD A;  4HXQ A;  3TF3 A;  3LHL A;  2RLA A;  1CEV A;  4FCI A;  1HQF A;  1P8Q A;  4IE1 A;  3SL1 A;  4GSM A;  3THH A;  2EIV A;  4GWC A;  4Q3V A;  4IU4 A;  1WVA A;  2A0M A;  1HQX A;  4Q3T A;  1WVB A;  3PZL A;  4Q41 A;  2PLL A;  4IXV A;  4MYL A;  3NIO A;  5HJA A;  5CEV A;  4G3H A;  1T4T A;  4IU1 A;  4RHI A;  1T5F A;  3LP7 A;  3GMZ A;  3NIP A;  3THJ A;  1WOH A;  3E6V A;  4ITY A;  1R1O A;  4CEV A;  1P8S A;  4HZE A;  4RHQ A;  3MJL A;  3E8Z A;  1HQG A;  3KV2 A;  4Q3U A;  1P8N A;  4Q3R A;  4DZ4 A;  3SL0 A;  2AEB A;  3NIQ A;  1TBH A;  1T4R A;  4IU5 A;  1WOI A;  2PHA A;  1P8O A;  4IE2 A;  2ZAV A;  1D3V A;  4RLA A;  1T4P A;  3TH7 A;  3MMR A;  3SKK A;  1TA1 A;  1PQ3 A;  3DJ8 A;  4Q3P A;  5HJ9 A;  4RHL A;  1GQ7 A;  3THE A;  3F80 A;  1ZPE A;  4GSZ A;  3CEV A;  4HWW A;  1XFK A;  1P8R A;  4FCK A;  4MXR A;  4Q42 A;  5RLA A;  3MFV A;  4Q3R C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3NIQA

Total Genus

Knots found

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations