3Q9CA

Crystal structure of h159a apah complexed with n8-acetylspermidine
Total Genus 117

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
117
sequence length
341
structure length
341
Chain Sequence
MRVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFDDVVAPARHGLETVLKVHDAGYLNFLETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPGHAAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGKGAGAGTTANYPMGRGTPYSVWGEALTDSLKRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLLVVMEGGYGVPEIGLNVANVLKGVAG
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-4)S4 (48-49)O2 (151-153)EMPTYTIV5 (153-156)S2 (17-19)TIV2 (26-29)TI'2 (166-169)3H2 (58-61)AH5 (173-184)TIV6 (161-164)AH2 (65-81)AH3 (105-112)O1 (92-94)TIV4 (94-97)TI1 (115-118)AH4 (124-144)S5 (148-151)S10 (315-319)TI2 (157-160)S6 (189-193)AH6 (200-206)TI3 (206-209)TIV7 (186-189)TI4 (209-212)TI5 (231-234)S8 (244-249)TII2 (240-243)S7 (212-219)3H3 (221-223)TII3 (250-253)TVIa1 (224-227)TIV8 (226-229)3H4 (238-240)AH7 (255-272)TIV9 (274-277)TI6 (283-286)TI8 (289-292)AH8 (298-310)TI7 (286-289)3H1 (7-11)S3 (22-24)AH1 (30-42)TII1 (121-124)AH9 (327-340)TIV3 (42-45)S9 (276-281)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Mycoplana ramosa
publication title Structure of prokaryotic polyamine deacetylase reveals evolutionary functional relationships with eukaryotic histone deacetylases .
pubmed doi rcsb
molecule keywords Acetylpolyamine amidohydrolase
total genus 117
structure length 341
sequence length 341
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature ec 3.5.1.48: Acetylspermidine deacetylase.
pdb deposition date 2011-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 3q9cA00
5DC8A 5DC6A 1VKGA 5G1CA 5G0JA 5EF7A 4ZURA 1W22A 2VQVA 5FCWA 4BKXB 3F07A 1C3PA 3SFFA 5JI5A 1C3RA 1T64A 3RQDA 4QA5A 5A2SA 4QA6A 5G17A 5D1CA 4ZUMA 4QA4A 4ZUQA 5EF8A 4BZ7A 5DC5A 5EEFA 5THSA 4QA2A 5EFBD 4A69A 1ZZ1A 3MZ4A 5G13A 5G1BA 5G12A 2VQJA 4CQFA 3MAXA 2VQOA 3EZPA 2V5WA 3ZNSA 2GH6A 5G3WA 5G0HA 2VQWG 5IX0A 5EFJD 5G11A 5ICNB 1ZZ0A 4CBYA 3EZTA 5G0YA 5G0IA 3F06A 4LXZA 3SFHA 3ZNRA 4BZ6A 3Q9FA 2VCGA 3Q9BA 3C10A 5EEMA 2V5XA 3EWFA 5EFKB 3MZ3A 5G1AA 5EFHA 5LI3A 5THUA 1ZZ3A 1C3SA 3C0ZA 5IWGA 3MENA 5D1BA 4QA1A 5G0XA 1T67A 4LY1A 5EEIA 3C0YA 4BZ9A 1T69A 4QA7A 5FUEA 3MZ6A 3Q9CA 5THTA 5EENA 4RN1A 3EW8A 5G0GA 5D1DA 4QA3A 4CBTA 3MZ7A 5THVA 3Q9EA 4QA0A 5EFNA 2VQQA 4RN2A 5EFGA 4ZUOA 5EEKA 5G10A 4ZUPA 3F0RA 5DC7A 4BZ5A 4BZ8A 5BWZA 4RN0A 4ZUNA 2VQMA
chains in the Genus database with same CATH superfamily
1ZPEA 1HQGA 1P8MA 5DC8A 5DC6A 1VKGA 5G1CA 5G0JA 1TBJA 5EF7A 3NIPA 2PHOA 4Q3TA 3LP7A 5HJ9A 3F80A 4FCKA 1WOGA 4Q3QA 4Q3RA 1R1OA 4ZURA 1W22A 4IU0A 4Q40A 4IU5A 2VQVA 4IU1A 2PLLA 4Q3UA 5FCWA 4BKXB 1T4TA 3F07A 4HZEA 1C3PA 3SFFA 5JI5A 4RHKA 1C3RA 1T64A 2ZAVA 4QA5A 3RQDA 1T4RA 1WOIA 4QA6A 5A2SA 2CEVA 5HJAA 1WVBA 5G17A 5D1CA 3M1RA 1PQ3A 4ZUMA 4QA4A 3GN0A 2EF5A 4ZUQA 5EF8A 3LP4A 4ITYA 4BZ7A 4MYLA 1T4PA 1CEVA 2EIVA 4MYFA 5DC5A 5EEFA 5THSA 3KV2A 4QA2A 5EFBD 4A69A 4IE1A 1TBLA 1ZZ1A 3MZ4A 4FCIA 5G13A 5G1BA 4RHJA 5G12A 2VQJA 1TBHA 4CQFA 4Q41A 3MAXA 2VQOA 3EZPA 2V5WA 3MFWA 1P8NA 2GH6A 3ZNSA 2RLAA 4MYKA 5G3WA 4I06A 4IXVA 5G0HA 2VQWG 5IX0A 5EFJD 4Q3RC 5G11A 5ICNB 1ZZ0A 1XFKA 3CEVA 3RLAA 4CBYA 4CEVA 3GMZA 3EZTA 5G0YA 5G0IA 3F06A 4LXZA 1D3VA 3SFHA 1HQHA 3TF3A 4RLAA 4RHIA 3SKKA 3ZNRA 4BZ6A 1P8OA 3Q9FA 3TH7A 2VCGA 3Q9BA 3NIOA 4GSVA 3C10A 4HWWA 5EEMA 2V5XA 3EWFA 4GSMA 3SJTA 5EFKB 3MZ3A 5G1AA 5EFHA 5LI3A 5THUA 1ZPGA 1ZZ3A 3SL1A 1C3SA 4HXQA 3C0ZA 3SL0A 5IWGA 1GQ7A 2AEBA 3MENA 4MYNA 4QA1A 4RHLA 1T67A 3MFVA 5D1BA 1HQ5A 5G0XA 1P8RA 1P8QA 4LY1A 5EEIA 1HQXA 3C0YA 1T5GA 4RHMA 1TA1A 4BZ9A 1T69A 4QA7A 1GQ6A 5FUEA 4IE2A 3MZ6A 1WVAA 3Q9CA 5THTA 5EENA 4GWCA 4RN1A 3EW8A 4Q3SA 5G0GA 4G3HA 3E8QA 4GWDA 4Q3VA 4IU4A 5D1DA 4RHQA 1P8PA 4Q3PA 3MMRA 1T5FA 4QA3A 3MJLA 1P8SA 4GSZA 3THJA 4CBTA 3MZ7A 4DZ4A 5THVA 3Q9EA 4QA0A 5RLAA 3PZLA 5EFNA 2VQQA 3E9BA 1HQFA 4IXUA 3E8ZA 4IE3A 4RN2A 3E6VA 3THEA 5CEVA 5EFGA 4ZUOA 1T4SA 3NIQA 5EEKA 5G10A 1RLAA 4Q42A 4ZUPA 3F0RA 5DC7A 3LHLA 1WOHA 4BZ5A 4BZ8A 3DJ8A 5BWZA 4RN0A 4ZUNA 2PHAA 2EF4A 2VQMA 2A0MA 3E6KA 4MXRA 3THHA
chains in the Genus database with same CATH topology
5DC8A 5DC6A 1VKGA 5G1CA 5G0JA 5EF7A 4ZURA 1W22A 2VQVA 5FCWA 4BKXB 3F07A 1C3PA 3SFFA 5JI5A 1C3RA 1T64A 3RQDA 4QA5A 5A2SA 4QA6A 5G17A 5D1CA 4ZUMA 4QA4A 4ZUQA 5EF8A 4BZ7A 5DC5A 5EEFA 5THSA 4QA2A 5EFBD 4A69A 1ZZ1A 3MZ4A 5G13A 5G1BA 5G12A 2VQJA 4CQFA 3MAXA 2VQOA 3EZPA 2V5WA 3ZNSA 2GH6A 5G3WA 5G0HA 2VQWG 5IX0A 5EFJD 5G11A 5ICNB 1ZZ0A 4CBYA 3EZTA 5G0YA 5G0IA 3F06A 4LXZA 3SFHA 3ZNRA 4BZ6A 3Q9FA 2VCGA 3Q9BA 3C10A 5EEMA 2V5XA 3EWFA 5EFKB 3MZ3A 5G1AA 5EFHA 5LI3A 5THUA 1ZZ3A 1C3SA 3C0ZA 5IWGA 3MENA 5D1BA 4QA1A 5G0XA 1T67A 4LY1A 5EEIA 3C0YA 4BZ9A 1T69A 4QA7A 5FUEA 3MZ6A 3Q9CA 5THTA 5EENA 4RN1A 3EW8A 5G0GA 5D1DA 4QA3A 4CBTA 3MZ7A 5THVA 3Q9EA 4QA0A 5EFNA 2VQQA 4RN2A 5EFGA 4ZUOA 5EEKA 5G10A 4ZUPA 3F0RA 5DC7A 4BZ5A 4BZ8A 5BWZA 4RN0A 4ZUNA 2VQMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DC8 A;  5DC6 A;  1VKG A;  5G1C A;  5G0J A;  5EF7 A;  4ZUR A;  1W22 A;  2VQV A;  5FCW A;  4BKX B;  3F07 A;  1C3P A;  3SFF A;  5JI5 A;  1C3R A;  1T64 A;  3RQD A;  4QA5 A;  5A2S A;  4QA6 A;  5G17 A;  5D1C A;  4ZUM A;  4QA4 A;  4ZUQ A;  5EF8 A;  4BZ7 A;  5DC5 A;  5EEF A;  5THS A;  4QA2 A;  5EFB D;  4A69 A;  1ZZ1 A;  3MZ4 A;  5G13 A;  5G1B A;  5G12 A;  2VQJ A;  4CQF A;  3MAX A;  2VQO A;  3EZP A;  2V5W A;  3ZNS A;  2GH6 A;  5G3W A;  5G0H A;  2VQW G;  5IX0 A;  5EFJ D;  5G11 A;  5ICN B;  1ZZ0 A;  4CBY A;  3EZT A;  5G0Y A;  5G0I A;  3F06 A;  4LXZ A;  3SFH A;  3ZNR A;  4BZ6 A;  3Q9F A;  2VCG A;  3Q9B A;  3C10 A;  5EEM A;  2V5X A;  3EWF A;  5EFK B;  3MZ3 A;  5G1A A;  5EFH A;  5LI3 A;  5THU A;  1ZZ3 A;  1C3S A;  3C0Z A;  5IWG A;  3MEN A;  5D1B A;  4QA1 A;  5G0X A;  1T67 A;  4LY1 A;  5EEI A;  3C0Y A;  4BZ9 A;  1T69 A;  4QA7 A;  5FUE A;  3MZ6 A;  3Q9C A;  5THT A;  5EEN A;  4RN1 A;  3EW8 A;  5G0G A;  5D1D A;  4QA3 A;  4CBT A;  3MZ7 A;  5THV A;  3Q9E A;  4QA0 A;  5EFN A;  2VQQ A;  4RN2 A;  5EFG A;  4ZUO A;  5EEK A;  5G10 A;  4ZUP A;  3F0R A;  5DC7 A;  4BZ5 A;  4BZ8 A;  5BWZ A;  4RN0 A;  4ZUN A;  2VQM A; 
#chains in the Genus database with same CATH topology
 1ZPE A;  1HQG A;  1P8M A;  5DC8 A;  5DC6 A;  1VKG A;  5G1C A;  5G0J A;  1TBJ A;  5EF7 A;  3NIP A;  2PHO A;  4Q3T A;  3LP7 A;  5HJ9 A;  3F80 A;  4FCK A;  1WOG A;  4Q3Q A;  4Q3R A;  1R1O A;  4ZUR A;  1W22 A;  4IU0 A;  4Q40 A;  4IU5 A;  2VQV A;  4IU1 A;  2PLL A;  4Q3U A;  5FCW A;  4BKX B;  1T4T A;  3F07 A;  4HZE A;  1C3P A;  3SFF A;  5JI5 A;  4RHK A;  1C3R A;  1T64 A;  2ZAV A;  4QA5 A;  3RQD A;  1T4R A;  1WOI A;  4QA6 A;  5A2S A;  2CEV A;  5HJA A;  1WVB A;  5G17 A;  5D1C A;  3M1R A;  1PQ3 A;  4ZUM A;  4QA4 A;  3GN0 A;  2EF5 A;  4ZUQ A;  5EF8 A;  3LP4 A;  4ITY A;  4BZ7 A;  4MYL A;  1T4P A;  1CEV A;  2EIV A;  4MYF A;  5DC5 A;  5EEF A;  5THS A;  3KV2 A;  4QA2 A;  5EFB D;  4A69 A;  4IE1 A;  1TBL A;  1ZZ1 A;  3MZ4 A;  4FCI A;  5G13 A;  5G1B A;  4RHJ A;  5G12 A;  2VQJ A;  1TBH A;  4CQF A;  4Q41 A;  3MAX A;  2VQO A;  3EZP A;  2V5W A;  3MFW A;  1P8N A;  2GH6 A;  3ZNS A;  2RLA A;  4MYK A;  5G3W A;  4I06 A;  4IXV A;  5G0H A;  2VQW G;  5IX0 A;  5EFJ D;  4Q3R C;  5G11 A;  5ICN B;  1ZZ0 A;  1XFK A;  3CEV A;  3RLA A;  4CBY A;  4CEV A;  3GMZ A;  3EZT A;  5G0Y A;  5G0I A;  3F06 A;  4LXZ A;  1D3V A;  3SFH A;  1HQH A;  3TF3 A;  4RLA A;  4RHI A;  3SKK A;  3ZNR A;  4BZ6 A;  1P8O A;  3Q9F A;  3TH7 A;  2VCG A;  3Q9B A;  3NIO A;  4GSV A;  3C10 A;  4HWW A;  5EEM A;  2V5X A;  3EWF A;  4GSM A;  3SJT A;  5EFK B;  3MZ3 A;  5G1A A;  5EFH A;  5LI3 A;  5THU A;  1ZPG A;  1ZZ3 A;  3SL1 A;  1C3S A;  4HXQ A;  3C0Z A;  3SL0 A;  5IWG A;  1GQ7 A;  2AEB A;  3MEN A;  4MYN A;  4QA1 A;  4RHL A;  1T67 A;  3MFV A;  5D1B A;  1HQ5 A;  5G0X A;  1P8R A;  1P8Q A;  4LY1 A;  5EEI A;  1HQX A;  3C0Y A;  1T5G A;  4RHM A;  1TA1 A;  4BZ9 A;  1T69 A;  4QA7 A;  1GQ6 A;  5FUE A;  4IE2 A;  3MZ6 A;  1WVA A;  3Q9C A;  5THT A;  5EEN A;  4GWC A;  4RN1 A;  3EW8 A;  4Q3S A;  5G0G A;  4G3H A;  3E8Q A;  4GWD A;  4Q3V A;  4IU4 A;  5D1D A;  4RHQ A;  1P8P A;  4Q3P A;  3MMR A;  1T5F A;  4QA3 A;  3MJL A;  1P8S A;  4GSZ A;  3THJ A;  4CBT A;  3MZ7 A;  4DZ4 A;  5THV A;  3Q9E A;  4QA0 A;  5RLA A;  3PZL A;  5EFN A;  2VQQ A;  3E9B A;  1HQF A;  4IXU A;  3E8Z A;  4IE3 A;  4RN2 A;  3E6V A;  3THE A;  5CEV A;  5EFG A;  4ZUO A;  1T4S A;  3NIQ A;  5EEK A;  5G10 A;  1RLA A;  4Q42 A;  4ZUP A;  3F0R A;  5DC7 A;  3LHL A;  1WOH A;  4BZ5 A;  4BZ8 A;  3DJ8 A;  5BWZ A;  4RN0 A;  4ZUN A;  2PHA A;  2EF4 A;  2VQM A;  2A0M A;  3E6K A;  4MXR A;  3THH A; 
#chains in the Genus database with same CATH homology
 5DC8 A;  5DC6 A;  1VKG A;  5G1C A;  5G0J A;  5EF7 A;  4ZUR A;  1W22 A;  2VQV A;  5FCW A;  4BKX B;  3F07 A;  1C3P A;  3SFF A;  5JI5 A;  1C3R A;  1T64 A;  3RQD A;  4QA5 A;  5A2S A;  4QA6 A;  5G17 A;  5D1C A;  4ZUM A;  4QA4 A;  4ZUQ A;  5EF8 A;  4BZ7 A;  5DC5 A;  5EEF A;  5THS A;  4QA2 A;  5EFB D;  4A69 A;  1ZZ1 A;  3MZ4 A;  5G13 A;  5G1B A;  5G12 A;  2VQJ A;  4CQF A;  3MAX A;  2VQO A;  3EZP A;  2V5W A;  3ZNS A;  2GH6 A;  5G3W A;  5G0H A;  2VQW G;  5IX0 A;  5EFJ D;  5G11 A;  5ICN B;  1ZZ0 A;  4CBY A;  3EZT A;  5G0Y A;  5G0I A;  3F06 A;  4LXZ A;  3SFH A;  3ZNR A;  4BZ6 A;  3Q9F A;  2VCG A;  3Q9B A;  3C10 A;  5EEM A;  2V5X A;  3EWF A;  5EFK B;  3MZ3 A;  5G1A A;  5EFH A;  5LI3 A;  5THU A;  1ZZ3 A;  1C3S A;  3C0Z A;  5IWG A;  3MEN A;  5D1B A;  4QA1 A;  5G0X A;  1T67 A;  4LY1 A;  5EEI A;  3C0Y A;  4BZ9 A;  1T69 A;  4QA7 A;  5FUE A;  3MZ6 A;  3Q9C A;  5THT A;  5EEN A;  4RN1 A;  3EW8 A;  5G0G A;  5D1D A;  4QA3 A;  4CBT A;  3MZ7 A;  5THV A;  3Q9E A;  4QA0 A;  5EFN A;  2VQQ A;  4RN2 A;  5EFG A;  4ZUO A;  5EEK A;  5G10 A;  4ZUP A;  3F0R A;  5DC7 A;  4BZ5 A;  4BZ8 A;  5BWZ A;  4RN0 A;  4ZUN A;  2VQM A; 
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