3Q9FA

Crystal structure of apah complexed with caps
Total Genus 113

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
113
sequence length
341
structure length
341
Chain Sequence
MRVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFDDVVAPARHGLETVLKVHDAGYLNFLETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPGHHAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGKGAGAGTTANYPMGRGTPYSVWGEALTDSLKRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLLVVMEGGYGVPEIGLNVANVLKGVAG
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS5 (148-151)S1 (3-4)S4 (48-49)O3 (151-153)3H1 (7-11)TIV3 (153-156)S2 (17-19)TVIII1 (26-29)TI'2 (166-169)AH1 (30-43)O1 (44-46)3H2 (58-61)AH5 (173-184)AH2 (65-81)AH3 (105-112)O2 (92-94)TIV2 (94-97)TI1 (115-118)AH4 (124-144)S10 (315-319)TI2 (157-160)S6 (189-193)TIV4 (161-164)AH6 (200-206)TI3 (206-209)TI4 (209-212)TI6 (231-234)S8 (244-249)TII2 (240-243)S7 (212-219)TI5 (220-223)TII3 (250-253)TIV5 (221-224)TVIa1 (224-227)3H3 (238-240)AH7 (255-272)TI7 (283-286)AH8 (298-310)TI8 (286-289)TI9 (289-292)O4 (323-325)AH9 (327-340)S3 (22-24)TII1 (121-124)TIV7 (274-277)S9 (276-281)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Mycoplana ramosa
publication title Structure of prokaryotic polyamine deacetylase reveals evolutionary functional relationships with eukaryotic histone deacetylases .
pubmed doi rcsb
molecule keywords Acetylpolyamine amidohydrolase
total genus 113
structure length 341
sequence length 341
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L
ec nomenclature ec 3.5.1.48: Acetylspermidine deacetylase.
pdb deposition date 2011-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 3q9fA00
5G12A 4QA7A 3SFFA 5DC8A 5EF8A 2VQOA 3MZ4A 5G1AA 4CBYA 4CBTA 1T67A 2V5XA 1T64A 4LY1A 5G11A 4BKXB 3C0ZA 3Q9FA 5IX0A 3EZPA 3MZ6A 4QA3A 5EFKB 5G13A 4RN0A 4CQFA 2GH6A 3EWFA 4ZUQA 5THSA 1W22A 3C10A 4QA2A 4LXZA 4QA0A 4QA6A 4ZUNA 1T69A 2VQQA 3Q9BA 4RN1A 5EFBD 1ZZ1A 5DC6A 3F0RA 4ZUPA 1C3PA 5IWGA 5BWZA 5G0IA 5G10A 5G0HA 5EFJD 5EFNA 5DC7A 5EFHA 3SFHA 5THTA 5EENA 4BZ9A 5FCWA 2VQVA 3F07A 5G3WA 5THUA 3Q9EA 4ZUMA 5ICNB 5D1DA 5THVA 4BZ7A 4BZ6A 2VQJA 5G1BA 4BZ8A 4ZURA 3MAXA 2VQMA 1C3RA 5G0XA 2VQWG 1C3SA 3F06A 4QA1A 3EZTA 4ZUOA 3MZ3A 3MZ7A 5D1BA 5EEIA 5D1CA 5EF7A 2V5WA 1ZZ0A 4BZ5A 5EFGA 5G17A 1ZZ3A 5LI3A 1VKGA 5EEKA 3MENA 5FUEA 4QA5A 5JI5A 4QA4A 5G0JA 3ZNRA 4RN2A 3RQDA 3ZNSA 5EEMA 5G1CA 5EEFA 2VCGA 5G0GA 3EW8A 5DC5A 4A69A 3Q9CA 5G0YA 5A2SA 3C0YA
chains in the Genus database with same CATH superfamily
2AEBA 5G12A 1TBHA 1XFKA 4QA7A 3SFFA 1CEVA 4IE1A 2VQOA 5DC8A 1HQFA 5EF8A 2PHAA 2RLAA 3MZ4A 3THJA 4FCKA 5G1AA 3MMRA 4CBYA 4CBTA 1P8NA 1P8PA 1T67A 1WOGA 2V5XA 1RLAA 1T64A 4IXUA 4LY1A 1T4SA 5G11A 4BKXB 3RLAA 3C0ZA 3F80A 3Q9FA 1ZPEA 3NIOA 5IX0A 2A0MA 1TBJA 4MXRA 3EZPA 1P8OA 1WVAA 3E6KA 2EF5A 4MYLA 3SL1A 3MZ6A 4GSMA 4QA3A 5EFKB 1HQHA 3KV2A 4RN0A 3E9BA 4Q3PA 5G13A 3SL0A 3SJTA 3E8ZA 4CQFA 1T4RA 2GH6A 1P8MA 3LHLA 3E8QA 3EWFA 5RLAA 4ZUQA 1GQ6A 4RHIA 5THSA 1W22A 1T4TA 3C10A 3SKKA 4IU0A 4Q3VA 4QA2A 4LXZA 4Q3QA 4HWWA 4QA0A 4QA6A 2PLLA 4ZUNA 3TF3A 4RHMA 1T69A 2VQQA 3MFVA 3Q9BA 4RN1A 4GWCA 1T5FA 1ZZ1A 4I06A 5EFBD 5DC6A 4ITYA 2ZAVA 2CEVA 3F0RA 4DZ4A 4ZUPA 4IU4A 1C3PA 5IWGA 5BWZA 5G0IA 5G10A 5G0HA 3MFWA 4Q3TA 5DC7A 4MYKA 1HQ5A 5EFNA 5EFHA 5EFJD 3M1RA 3SFHA 5THTA 3GN0A 4MYNA 5EENA 3LP7A 3THHA 4BZ9A 5FCWA 2VQVA 3F07A 1P8RA 5G3WA 5THUA 4GWDA 3Q9EA 4Q42A 5HJAA 3CEVA 3THEA 4ZUMA 1P8SA 1T4PA 3PZLA 3LP4A 5ICNB 4GSVA 4Q3RC 5D1DA 3GMZA 4MYFA 2VQJA 5THVA 4BZ7A 4BZ6A 4RHLA 4G3HA 5G1BA 4BZ8A 4Q41A 4ZURA 3MAXA 4IE3A 5HJ9A 2VQMA 1C3RA 5G0XA 1GQ7A 4CEVA 1R1OA 2VQWG 1C3SA 4RHQA 3E6VA 3F06A 3NIQA 4QA1A 1T5GA 3EZTA 4ZUOA 3MZ3A 3MZ7A 4Q3UA 5D1BA 5EEIA 2PHOA 5D1CA 5EF7A 5CEVA 4Q40A 2V5WA 4Q3SA 1ZZ0A 4RHKA 4BZ5A 5EFGA 1TA1A 3MJLA 4GSZA 5G17A 1ZZ3A 5LI3A 1VKGA 5EEKA 1WVBA 3MENA 1HQGA 5FUEA 4RHJA 4Q3RA 4QA5A 5JI5A 4QA4A 4IXVA 4HZEA 5G0JA 1TBLA 4HXQA 1P8QA 1WOHA 4RN2A 4RLAA 3ZNRA 2EF4A 3RQDA 3ZNSA 1HQXA 5EEMA 2EIVA 5G1CA 5EEFA 2VCGA 1PQ3A 1WOIA 4FCIA 4IU1A 5G0GA 3EW8A 1D3VA 5DC5A 4IU5A 3TH7A 4A69A 3DJ8A 3Q9CA 5G0YA 4IE2A 5A2SA 3NIPA 1ZPGA 3C0YA
chains in the Genus database with same CATH topology
5G12A 4QA7A 3SFFA 5DC8A 5EF8A 2VQOA 3MZ4A 5G1AA 4CBYA 4CBTA 1T67A 2V5XA 1T64A 4LY1A 5G11A 4BKXB 3C0ZA 3Q9FA 5IX0A 3EZPA 3MZ6A 4QA3A 5EFKB 5G13A 4RN0A 4CQFA 2GH6A 3EWFA 4ZUQA 5THSA 1W22A 3C10A 4QA2A 4LXZA 4QA0A 4QA6A 4ZUNA 1T69A 2VQQA 3Q9BA 4RN1A 5EFBD 1ZZ1A 5DC6A 3F0RA 4ZUPA 1C3PA 5IWGA 5BWZA 5G0IA 5G10A 5G0HA 5EFJD 5EFNA 5DC7A 5EFHA 3SFHA 5THTA 5EENA 4BZ9A 5FCWA 2VQVA 3F07A 5G3WA 5THUA 3Q9EA 4ZUMA 5ICNB 5D1DA 5THVA 4BZ7A 4BZ6A 2VQJA 5G1BA 4BZ8A 4ZURA 3MAXA 2VQMA 1C3RA 5G0XA 2VQWG 1C3SA 3F06A 4QA1A 3EZTA 4ZUOA 3MZ3A 3MZ7A 5D1BA 5EEIA 5D1CA 5EF7A 2V5WA 1ZZ0A 4BZ5A 5EFGA 5G17A 1ZZ3A 5LI3A 1VKGA 5EEKA 3MENA 5FUEA 4QA5A 5JI5A 4QA4A 5G0JA 3ZNRA 4RN2A 3RQDA 3ZNSA 5EEMA 5G1CA 5EEFA 2VCGA 5G0GA 3EW8A 5DC5A 4A69A 3Q9CA 5G0YA 5A2SA 3C0YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5G12 A;  4QA7 A;  3SFF A;  5DC8 A;  5EF8 A;  2VQO A;  3MZ4 A;  5G1A A;  4CBY A;  4CBT A;  1T67 A;  2V5X A;  1T64 A;  4LY1 A;  5G11 A;  4BKX B;  3C0Z A;  3Q9F A;  5IX0 A;  3EZP A;  3MZ6 A;  4QA3 A;  5EFK B;  5G13 A;  4RN0 A;  4CQF A;  2GH6 A;  3EWF A;  4ZUQ A;  5THS A;  1W22 A;  3C10 A;  4QA2 A;  4LXZ A;  4QA0 A;  4QA6 A;  4ZUN A;  1T69 A;  2VQQ A;  3Q9B A;  4RN1 A;  5EFB D;  1ZZ1 A;  5DC6 A;  3F0R A;  4ZUP A;  1C3P A;  5IWG A;  5BWZ A;  5G0I A;  5G10 A;  5G0H A;  5EFJ D;  5EFN A;  5DC7 A;  5EFH A;  3SFH A;  5THT A;  5EEN A;  4BZ9 A;  5FCW A;  2VQV A;  3F07 A;  5G3W A;  5THU A;  3Q9E A;  4ZUM A;  5ICN B;  5D1D A;  5THV A;  4BZ7 A;  4BZ6 A;  2VQJ A;  5G1B A;  4BZ8 A;  4ZUR A;  3MAX A;  2VQM A;  1C3R A;  5G0X A;  2VQW G;  1C3S A;  3F06 A;  4QA1 A;  3EZT A;  4ZUO A;  3MZ3 A;  3MZ7 A;  5D1B A;  5EEI A;  5D1C A;  5EF7 A;  2V5W A;  1ZZ0 A;  4BZ5 A;  5EFG A;  5G17 A;  1ZZ3 A;  5LI3 A;  1VKG A;  5EEK A;  3MEN A;  5FUE A;  4QA5 A;  5JI5 A;  4QA4 A;  5G0J A;  3ZNR A;  4RN2 A;  3RQD A;  3ZNS A;  5EEM A;  5G1C A;  5EEF A;  2VCG A;  5G0G A;  3EW8 A;  5DC5 A;  4A69 A;  3Q9C A;  5G0Y A;  5A2S A;  3C0Y A; 
#chains in the Genus database with same CATH topology
 2AEB A;  5G12 A;  1TBH A;  1XFK A;  4QA7 A;  3SFF A;  1CEV A;  4IE1 A;  2VQO A;  5DC8 A;  1HQF A;  5EF8 A;  2PHA A;  2RLA A;  3MZ4 A;  3THJ A;  4FCK A;  5G1A A;  3MMR A;  4CBY A;  4CBT A;  1P8N A;  1P8P A;  1T67 A;  1WOG A;  2V5X A;  1RLA A;  1T64 A;  4IXU A;  4LY1 A;  1T4S A;  5G11 A;  4BKX B;  3RLA A;  3C0Z A;  3F80 A;  3Q9F A;  1ZPE A;  3NIO A;  5IX0 A;  2A0M A;  1TBJ A;  4MXR A;  3EZP A;  1P8O A;  1WVA A;  3E6K A;  2EF5 A;  4MYL A;  3SL1 A;  3MZ6 A;  4GSM A;  4QA3 A;  5EFK B;  1HQH A;  3KV2 A;  4RN0 A;  3E9B A;  4Q3P A;  5G13 A;  3SL0 A;  3SJT A;  3E8Z A;  4CQF A;  1T4R A;  2GH6 A;  1P8M A;  3LHL A;  3E8Q A;  3EWF A;  5RLA A;  4ZUQ A;  1GQ6 A;  4RHI A;  5THS A;  1W22 A;  1T4T A;  3C10 A;  3SKK A;  4IU0 A;  4Q3V A;  4QA2 A;  4LXZ A;  4Q3Q A;  4HWW A;  4QA0 A;  4QA6 A;  2PLL A;  4ZUN A;  3TF3 A;  4RHM A;  1T69 A;  2VQQ A;  3MFV A;  3Q9B A;  4RN1 A;  4GWC A;  1T5F A;  1ZZ1 A;  4I06 A;  5EFB D;  5DC6 A;  4ITY A;  2ZAV A;  2CEV A;  3F0R A;  4DZ4 A;  4ZUP A;  4IU4 A;  1C3P A;  5IWG A;  5BWZ A;  5G0I A;  5G10 A;  5G0H A;  3MFW A;  4Q3T A;  5DC7 A;  4MYK A;  1HQ5 A;  5EFN A;  5EFH A;  5EFJ D;  3M1R A;  3SFH A;  5THT A;  3GN0 A;  4MYN A;  5EEN A;  3LP7 A;  3THH A;  4BZ9 A;  5FCW A;  2VQV A;  3F07 A;  1P8R A;  5G3W A;  5THU A;  4GWD A;  3Q9E A;  4Q42 A;  5HJA A;  3CEV A;  3THE A;  4ZUM A;  1P8S A;  1T4P A;  3PZL A;  3LP4 A;  5ICN B;  4GSV A;  4Q3R C;  5D1D A;  3GMZ A;  4MYF A;  2VQJ A;  5THV A;  4BZ7 A;  4BZ6 A;  4RHL A;  4G3H A;  5G1B A;  4BZ8 A;  4Q41 A;  4ZUR A;  3MAX A;  4IE3 A;  5HJ9 A;  2VQM A;  1C3R A;  5G0X A;  1GQ7 A;  4CEV A;  1R1O A;  2VQW G;  1C3S A;  4RHQ A;  3E6V A;  3F06 A;  3NIQ A;  4QA1 A;  1T5G A;  3EZT A;  4ZUO A;  3MZ3 A;  3MZ7 A;  4Q3U A;  5D1B A;  5EEI A;  2PHO A;  5D1C A;  5EF7 A;  5CEV A;  4Q40 A;  2V5W A;  4Q3S A;  1ZZ0 A;  4RHK A;  4BZ5 A;  5EFG A;  1TA1 A;  3MJL A;  4GSZ A;  5G17 A;  1ZZ3 A;  5LI3 A;  1VKG A;  5EEK A;  1WVB A;  3MEN A;  1HQG A;  5FUE A;  4RHJ A;  4Q3R A;  4QA5 A;  5JI5 A;  4QA4 A;  4IXV A;  4HZE A;  5G0J A;  1TBL A;  4HXQ A;  1P8Q A;  1WOH A;  4RN2 A;  4RLA A;  3ZNR A;  2EF4 A;  3RQD A;  3ZNS A;  1HQX A;  5EEM A;  2EIV A;  5G1C A;  5EEF A;  2VCG A;  1PQ3 A;  1WOI A;  4FCI A;  4IU1 A;  5G0G A;  3EW8 A;  1D3V A;  5DC5 A;  4IU5 A;  3TH7 A;  4A69 A;  3DJ8 A;  3Q9C A;  5G0Y A;  4IE2 A;  5A2S A;  3NIP A;  1ZPG A;  3C0Y A; 
#chains in the Genus database with same CATH homology
 5G12 A;  4QA7 A;  3SFF A;  5DC8 A;  5EF8 A;  2VQO A;  3MZ4 A;  5G1A A;  4CBY A;  4CBT A;  1T67 A;  2V5X A;  1T64 A;  4LY1 A;  5G11 A;  4BKX B;  3C0Z A;  3Q9F A;  5IX0 A;  3EZP A;  3MZ6 A;  4QA3 A;  5EFK B;  5G13 A;  4RN0 A;  4CQF A;  2GH6 A;  3EWF A;  4ZUQ A;  5THS A;  1W22 A;  3C10 A;  4QA2 A;  4LXZ A;  4QA0 A;  4QA6 A;  4ZUN A;  1T69 A;  2VQQ A;  3Q9B A;  4RN1 A;  5EFB D;  1ZZ1 A;  5DC6 A;  3F0R A;  4ZUP A;  1C3P A;  5IWG A;  5BWZ A;  5G0I A;  5G10 A;  5G0H A;  5EFJ D;  5EFN A;  5DC7 A;  5EFH A;  3SFH A;  5THT A;  5EEN A;  4BZ9 A;  5FCW A;  2VQV A;  3F07 A;  5G3W A;  5THU A;  3Q9E A;  4ZUM A;  5ICN B;  5D1D A;  5THV A;  4BZ7 A;  4BZ6 A;  2VQJ A;  5G1B A;  4BZ8 A;  4ZUR A;  3MAX A;  2VQM A;  1C3R A;  5G0X A;  2VQW G;  1C3S A;  3F06 A;  4QA1 A;  3EZT A;  4ZUO A;  3MZ3 A;  3MZ7 A;  5D1B A;  5EEI A;  5D1C A;  5EF7 A;  2V5W A;  1ZZ0 A;  4BZ5 A;  5EFG A;  5G17 A;  1ZZ3 A;  5LI3 A;  1VKG A;  5EEK A;  3MEN A;  5FUE A;  4QA5 A;  5JI5 A;  4QA4 A;  5G0J A;  3ZNR A;  4RN2 A;  3RQD A;  3ZNS A;  5EEM A;  5G1C A;  5EEF A;  2VCG A;  5G0G A;  3EW8 A;  5DC5 A;  4A69 A;  3Q9C A;  5G0Y A;  5A2S A;  3C0Y A; 
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