3NIQA

Crystal structure of pseudomonas aeruginosa guanidinopropionase
Total Genus 116
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
116
Knots found
sequence length
315
structure length
315
Chain Sequence
DHPQPLDAAEIPRFAGIPTFMRLPAFTDPAALQVGLIGVPWDGGTTNRAGARHGPREVRNLSSLMRKVHHVSRIAPYDLVRVGDLGDAPVNPIDLLDSLRRIEGFYRQVHAAGTLPLSVGGDHLVTLPIFRALGRERPLGMVHFDAHSDTNDRYFGDNPYTHGTPFRRAIEEGLLDPLRTVQIGIRGSVYSPDDDAFARECGIRVIHMEEFVELGVEATLAEARRVVGAGPTYVSFDVDVLDPAFAPGTGTPEIGGMTSLQAQQLVRGLRGLDLVGADVVEVSPPFDVGGATALVGATMMFELLCLLAESAARSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords 3-guanidinopropionase
publication title Crystal structures of Pseudomonas aeruginosa guanidinobutyrase and guanidinopropionase, members of the ureohydrolase superfamily
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 116
structure length 315
sequence length 315
chains with identical sequence B
other databases KnotProt 2.0: S +31 +31 +31
ec nomenclature ec 3.5.3.17: Guanidinopropionase.
pdb deposition date 2010-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 3niqA00
3THEA 3M1RA 1WOIA 1ZPGA 1CEVA 3MJLA 1T5FA 4RHQA 4GWDA 4HZEA 4Q3RA 3TF3A 2EF5A 3NIOA 4HXQA 4IE1A 3E6KA 1HQHA 2PHAA 1WVAA 1T4PA 3NIQA 4IXVA 3E8QA 3RLAA 1T4RA 2ZAVA 1WOGA 4MYFA 4IU5A 1T4SA 1R1OA 1T4TA 2A0MA 3MMRA 4IU0A 4RHMA 1D3VA 3SL1A 4IE3A 1HQFA 3LP4A 4IU4A 1P8QA 1WOHA 3MFVA 4RHJA 3THHA 4GSZA 4RLAA 4Q3UA 2EF4A 3GN0A 3LP7A 2RLAA 3F80A 2PHOA 4Q3QA 2EIVA 4G3HA 4MXRA 1HQXA 4RHIA 1GQ7A 1P8MA 4I06A 3SJTA 4ITYA 3E6VA 4GSVA 4Q3SA 1WVBA 4Q42A 1TA1A 4Q41A 1PQ3A 1HQGA 2AEBA 1P8OA 3KV2A 4IE2A 4Q3RC 3TH7A 2PLLA 4Q3VA 4RHLA 1P8SA 1TBJA 4MYNA 3DJ8A 4HWWA 3SKKA 3GMZA 1TBLA 4MYKA 4DZ4A 1P8NA 3NIPA 5RLAA 4CEVA 3SL0A 5HJAA 1RLAA 3LHLA 3THJA 1T5GA 4Q3PA 1GQ6A 4IU1A 4Q3TA 4MYLA 1P8RA 5HJ9A 5CEVA 1XFKA 2CEVA 1P8PA 4GSMA 1HQ5A 4FCIA 4Q40A 1TBHA 4IXUA 4FCKA 3PZLA 1ZPEA 3E8ZA 4RHKA 3MFWA 4GWCA 3CEVA 3E9BA
chains in the Genus database with same CATH superfamily
5A2SA 4QA5A 4QA0A 5G0YA 5EEKA 3THEA 3MENA 5EF8A 5THSA 3M1RA 4ZUQA 1WOIA 1ZPGA 4CQFA 1CEVA 3MJLA 3SL1A 3C0ZA 1T5FA 3Q9CA 4RHQA 4GWDA 4HZEA 4Q3RA 5FCWA 3RQDA 3TF3A 5THUA 4BKXB 2EF5A 5G12A 5G0XA 2V5WA 5G1BA 3NIOA 3Q9BA 4HXQA 4IE1A 3E6KA 1HQHA 2PHAA 4BZ9A 1T64A 1WVAA 3C10A 3MZ7A 3Q9FA 5EEIA 1T4PA 3NIQA 5JI5A 4IXVA 1C3SA 5DC6A 1T67A 1ZZ1A 3E8QA 4LXZA 3RLAA 1T4RA 5BWZA 2ZAVA 1WOGA 4MYFA 5G1CA 4IU5A 5THVA 2VQWG 3EZPA 4ZUMA 5DC7A 5G0GA 1T4SA 4A69A 1R1OA 1T4TA 2VQVA 2A0MA 1T69A 3MMRA 4IU0A 1D3VA 4RHMA 5G10A 4IE3A 3MZ3A 1ZZ0A 3SFFA 1HQFA 3LP4A 4IU4A 5ICNB 1VKGA 1P8QA 3Q9EA 4CBYA 5DC8A 5EENA 1ZZ3A 5EEFA 1WOHA 3C0YA 3MFVA 5D1DA 4RHJA 5IWGA 3THHA 4GSZA 4RLAA 4Q3UA 2EF4A 5EFHA 4QA3A 3GN0A 5EF7A 3LP7A 2RLAA 3F80A 5D1CA 5EFBD 3EWFA 5EFGA 2PHOA 4BZ6A 4Q3QA 2GH6A 2EIVA 5G0IA 4BZ7A 3MZ6A 4QA1A 4G3HA 5EFNA 4MXRA 1HQXA 4RHIA 1GQ7A 4RN0A 5G0JA 1P8MA 5EFJD 4I06A 3SFHA 3SJTA 4ITYA 4BZ5A 3F0RA 3E6VA 4GSVA 4Q3SA 1WVBA 4Q42A 5DC5A 4ZUNA 1TA1A 4ZUOA 5IX0A 4Q41A 1PQ3A 5G17A 1HQGA 2AEBA 5FUEA 1P8OA 3KV2A 4IE2A 4QA4A 1C3RA 4Q3RC 1W22A 4QA6A 5G11A 2VQOA 5D1BA 2PLLA 4Q3VA 4RHLA 4QA2A 3TH7A 1P8SA 4RN2A 1TBJA 4MYNA 3DJ8A 4RN1A 4HWWA 2VQQA 4LY1A 2V5XA 3SKKA 3GMZA 1TBLA 4MYKA 4DZ4A 5G0HA 1P8NA 3NIPA 1C3PA 3MAXA 5RLAA 4CEVA 3SL0A 5HJAA 1RLAA 3LHLA 5LI3A 3ZNRA 3F06A 5EEMA 3THJA 3EW8A 1T5GA 3EZTA 4Q3PA 3ZNSA 2VQMA 1GQ6A 4IU1A 3F07A 4Q3TA 5G13A 4MYLA 1P8RA 4QA7A 2VCGA 5HJ9A 5CEVA 2VQJA 1XFKA 5G1AA 2CEVA 5G3WA 1P8PA 4GSMA 1HQ5A 4FCIA 4Q40A 1TBHA 5THTA 4CBTA 4IXUA 4FCKA 3PZLA 5EFKB 1ZPEA 3E8ZA 4RHKA 4ZURA 3MZ4A 3MFWA 4BZ8A 4ZUPA 4GWCA 3CEVA 3E9BA
chains in the Genus database with same CATH topology
3THEA 3M1RA 1WOIA 1ZPGA 1CEVA 3MJLA 1T5FA 4RHQA 4GWDA 4HZEA 4Q3RA 3TF3A 2EF5A 3NIOA 4HXQA 4IE1A 3E6KA 1HQHA 2PHAA 1WVAA 1T4PA 3NIQA 4IXVA 3E8QA 3RLAA 1T4RA 2ZAVA 1WOGA 4MYFA 4IU5A 1T4SA 1R1OA 1T4TA 2A0MA 3MMRA 4IU0A 4RHMA 1D3VA 3SL1A 4IE3A 1HQFA 3LP4A 4IU4A 1P8QA 1WOHA 3MFVA 4RHJA 3THHA 4GSZA 4RLAA 4Q3UA 2EF4A 3GN0A 3LP7A 2RLAA 3F80A 2PHOA 4Q3QA 2EIVA 4G3HA 4MXRA 1HQXA 4RHIA 1GQ7A 1P8MA 4I06A 3SJTA 4ITYA 3E6VA 4GSVA 4Q3SA 1WVBA 4Q42A 1TA1A 4Q41A 1PQ3A 1HQGA 2AEBA 1P8OA 3KV2A 4IE2A 4Q3RC 3TH7A 2PLLA 4Q3VA 4RHLA 1P8SA 1TBJA 4MYNA 3DJ8A 4HWWA 3SKKA 3GMZA 1TBLA 4MYKA 4DZ4A 1P8NA 3NIPA 5RLAA 4CEVA 3SL0A 5HJAA 1RLAA 3LHLA 3THJA 1T5GA 4Q3PA 1GQ6A 4IU1A 4Q3TA 4MYLA 1P8RA 5HJ9A 5CEVA 1XFKA 2CEVA 1P8PA 4GSMA 1HQ5A 4FCIA 4Q40A 1TBHA 4IXUA 4FCKA 3PZLA 1ZPEA 3E8ZA 4RHKA 3MFWA 4GWCA 3CEVA 3E9BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3THE A;  3M1R A;  1WOI A;  1ZPG A;  1CEV A;  3MJL A;  1T5F A;  4RHQ A;  4GWD A;  4HZE A;  4Q3R A;  3TF3 A;  2EF5 A;  3NIO A;  4HXQ A;  4IE1 A;  3E6K A;  1HQH A;  2PHA A;  1WVA A;  1T4P A;  3NIQ A;  4IXV A;  3E8Q A;  3RLA A;  1T4R A;  2ZAV A;  1WOG A;  4MYF A;  4IU5 A;  1T4S A;  1R1O A;  1T4T A;  2A0M A;  3MMR A;  4IU0 A;  4RHM A;  1D3V A;  3SL1 A;  4IE3 A;  1HQF A;  3LP4 A;  4IU4 A;  1P8Q A;  1WOH A;  3MFV A;  4RHJ A;  3THH A;  4GSZ A;  4RLA A;  4Q3U A;  2EF4 A;  3GN0 A;  3LP7 A;  2RLA A;  3F80 A;  2PHO A;  4Q3Q A;  2EIV A;  4G3H A;  4MXR A;  1HQX A;  4RHI A;  1GQ7 A;  1P8M A;  4I06 A;  3SJT A;  4ITY A;  3E6V A;  4GSV A;  4Q3S A;  1WVB A;  4Q42 A;  1TA1 A;  4Q41 A;  1PQ3 A;  1HQG A;  2AEB A;  1P8O A;  3KV2 A;  4IE2 A;  4Q3R C;  3TH7 A;  2PLL A;  4Q3V A;  4RHL A;  1P8S A;  1TBJ A;  4MYN A;  3DJ8 A;  4HWW A;  3SKK A;  3GMZ A;  1TBL A;  4MYK A;  4DZ4 A;  1P8N A;  3NIP A;  5RLA A;  4CEV A;  3SL0 A;  5HJA A;  1RLA A;  3LHL A;  3THJ A;  1T5G A;  4Q3P A;  1GQ6 A;  4IU1 A;  4Q3T A;  4MYL A;  1P8R A;  5HJ9 A;  5CEV A;  1XFK A;  2CEV A;  1P8P A;  4GSM A;  1HQ5 A;  4FCI A;  4Q40 A;  1TBH A;  4IXU A;  4FCK A;  3PZL A;  1ZPE A;  3E8Z A;  4RHK A;  3MFW A;  4GWC A;  3CEV A;  3E9B A; 
#chains in the Genus database with same CATH topology
 5A2S A;  4QA5 A;  4QA0 A;  5G0Y A;  5EEK A;  3THE A;  3MEN A;  5EF8 A;  5THS A;  3M1R A;  4ZUQ A;  1WOI A;  1ZPG A;  4CQF A;  1CEV A;  3MJL A;  3SL1 A;  3C0Z A;  1T5F A;  3Q9C A;  4RHQ A;  4GWD A;  4HZE A;  4Q3R A;  5FCW A;  3RQD A;  3TF3 A;  5THU A;  4BKX B;  2EF5 A;  5G12 A;  5G0X A;  2V5W A;  5G1B A;  3NIO A;  3Q9B A;  4HXQ A;  4IE1 A;  3E6K A;  1HQH A;  2PHA A;  4BZ9 A;  1T64 A;  1WVA A;  3C10 A;  3MZ7 A;  3Q9F A;  5EEI A;  1T4P A;  3NIQ A;  5JI5 A;  4IXV A;  1C3S A;  5DC6 A;  1T67 A;  1ZZ1 A;  3E8Q A;  4LXZ A;  3RLA A;  1T4R A;  5BWZ A;  2ZAV A;  1WOG A;  4MYF A;  5G1C A;  4IU5 A;  5THV A;  2VQW G;  3EZP A;  4ZUM A;  5DC7 A;  5G0G A;  1T4S A;  4A69 A;  1R1O A;  1T4T A;  2VQV A;  2A0M A;  1T69 A;  3MMR A;  4IU0 A;  1D3V A;  4RHM A;  5G10 A;  4IE3 A;  3MZ3 A;  1ZZ0 A;  3SFF A;  1HQF A;  3LP4 A;  4IU4 A;  5ICN B;  1VKG A;  1P8Q A;  3Q9E A;  4CBY A;  5DC8 A;  5EEN A;  1ZZ3 A;  5EEF A;  1WOH A;  3C0Y A;  3MFV A;  5D1D A;  4RHJ A;  5IWG A;  3THH A;  4GSZ A;  4RLA A;  4Q3U A;  2EF4 A;  5EFH A;  4QA3 A;  3GN0 A;  5EF7 A;  3LP7 A;  2RLA A;  3F80 A;  5D1C A;  5EFB D;  3EWF A;  5EFG A;  2PHO A;  4BZ6 A;  4Q3Q A;  2GH6 A;  2EIV A;  5G0I A;  4BZ7 A;  3MZ6 A;  4QA1 A;  4G3H A;  5EFN A;  4MXR A;  1HQX A;  4RHI A;  1GQ7 A;  4RN0 A;  5G0J A;  1P8M A;  5EFJ D;  4I06 A;  3SFH A;  3SJT A;  4ITY A;  4BZ5 A;  3F0R A;  3E6V A;  4GSV A;  4Q3S A;  1WVB A;  4Q42 A;  5DC5 A;  4ZUN A;  1TA1 A;  4ZUO A;  5IX0 A;  4Q41 A;  1PQ3 A;  5G17 A;  1HQG A;  2AEB A;  5FUE A;  1P8O A;  3KV2 A;  4IE2 A;  4QA4 A;  1C3R A;  4Q3R C;  1W22 A;  4QA6 A;  5G11 A;  2VQO A;  5D1B A;  2PLL A;  4Q3V A;  4RHL A;  4QA2 A;  3TH7 A;  1P8S A;  4RN2 A;  1TBJ A;  4MYN A;  3DJ8 A;  4RN1 A;  4HWW A;  2VQQ A;  4LY1 A;  2V5X A;  3SKK A;  3GMZ A;  1TBL A;  4MYK A;  4DZ4 A;  5G0H A;  1P8N A;  3NIP A;  1C3P A;  3MAX A;  5RLA A;  4CEV A;  3SL0 A;  5HJA A;  1RLA A;  3LHL A;  5LI3 A;  3ZNR A;  3F06 A;  5EEM A;  3THJ A;  3EW8 A;  1T5G A;  3EZT A;  4Q3P A;  3ZNS A;  2VQM A;  1GQ6 A;  4IU1 A;  3F07 A;  4Q3T A;  5G13 A;  4MYL A;  1P8R A;  4QA7 A;  2VCG A;  5HJ9 A;  5CEV A;  2VQJ A;  1XFK A;  5G1A A;  2CEV A;  5G3W A;  1P8P A;  4GSM A;  1HQ5 A;  4FCI A;  4Q40 A;  1TBH A;  5THT A;  4CBT A;  4IXU A;  4FCK A;  3PZL A;  5EFK B;  1ZPE A;  3E8Z A;  4RHK A;  4ZUR A;  3MZ4 A;  3MFW A;  4BZ8 A;  4ZUP A;  4GWC A;  3CEV A;  3E9B A; 
#chains in the Genus database with same CATH homology
 3THE A;  3M1R A;  1WOI A;  1ZPG A;  1CEV A;  3MJL A;  1T5F A;  4RHQ A;  4GWD A;  4HZE A;  4Q3R A;  3TF3 A;  2EF5 A;  3NIO A;  4HXQ A;  4IE1 A;  3E6K A;  1HQH A;  2PHA A;  1WVA A;  1T4P A;  3NIQ A;  4IXV A;  3E8Q A;  3RLA A;  1T4R A;  2ZAV A;  1WOG A;  4MYF A;  4IU5 A;  1T4S A;  1R1O A;  1T4T A;  2A0M A;  3MMR A;  4IU0 A;  4RHM A;  1D3V A;  3SL1 A;  4IE3 A;  1HQF A;  3LP4 A;  4IU4 A;  1P8Q A;  1WOH A;  3MFV A;  4RHJ A;  3THH A;  4GSZ A;  4RLA A;  4Q3U A;  2EF4 A;  3GN0 A;  3LP7 A;  2RLA A;  3F80 A;  2PHO A;  4Q3Q A;  2EIV A;  4G3H A;  4MXR A;  1HQX A;  4RHI A;  1GQ7 A;  1P8M A;  4I06 A;  3SJT A;  4ITY A;  3E6V A;  4GSV A;  4Q3S A;  1WVB A;  4Q42 A;  1TA1 A;  4Q41 A;  1PQ3 A;  1HQG A;  2AEB A;  1P8O A;  3KV2 A;  4IE2 A;  4Q3R C;  3TH7 A;  2PLL A;  4Q3V A;  4RHL A;  1P8S A;  1TBJ A;  4MYN A;  3DJ8 A;  4HWW A;  3SKK A;  3GMZ A;  1TBL A;  4MYK A;  4DZ4 A;  1P8N A;  3NIP A;  5RLA A;  4CEV A;  3SL0 A;  5HJA A;  1RLA A;  3LHL A;  3THJ A;  1T5G A;  4Q3P A;  1GQ6 A;  4IU1 A;  4Q3T A;  4MYL A;  1P8R A;  5HJ9 A;  5CEV A;  1XFK A;  2CEV A;  1P8P A;  4GSM A;  1HQ5 A;  4FCI A;  4Q40 A;  1TBH A;  4IXU A;  4FCK A;  3PZL A;  1ZPE A;  3E8Z A;  4RHK A;  3MFW A;  4GWC A;  3CEV A;  3E9B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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