3THEA

Crystal structure of co2+2-hai (ph 8.5)
Total Genus 117

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
117
sequence length
314
structure length
314
Chain Sequence
RTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKEQECDVKDYGDLPFADIPNDSPFQIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAITLACFGLAREGNHKPIDYLN
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (7-13)O1 (13-15)TIV2 (63-66)TIV4 (135-138)TI1 (16-19)S8 (270-276)TVIII1 (17-20)AH1 (27-34)S2 (46-52)AH2 (36-42)AH3 (70-90)TII'1 (64-67)S3 (93-98)AH4 (102-114)AH9 (254-267)S4 (119-123)TI2 (115-118)S7 (227-232)3H2 (140-142)TVIII2 (124-127)S5 (174-179)TI3 (131-134)TI4 (132-135)3H3 (150-152)AH5 (143-148)TIV5 (152-155)TII1 (159-162)TIV6 (153-156)TI6 (170-173)AH7 (200-206)TI9 (238-241)TI8 (237-240)AH10 (286-304)TIV10 (248-251)TI10 (279-282)TI11 (280-283)TI12 (307-310)3H1 (24-26)TIV1 (58-61)TIV3 (67-70)TI5 (162-165)AH8 (208-221)TIV9 (241-244)3H4 (233-235)TVIII4 (283-286)AH6 (184-193)S6 (196-199)TVIII3 (244-247)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Homo sapiens
publication title Crystal structures of complexes with cobalt-reconstituted human arginase I.
pubmed doi rcsb
molecule keywords Arginase-1
total genus 117
structure length 314
sequence length 314
chains with identical sequence B
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2011-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 3theA00
1T4TA 2EF5A 3NIOA 1T5FA 3LP7A 4G3HA 3M1RA 1TBJA 4GSZA 4MYNA 3E6KA 3CEVA 4Q3TA 3NIPA 1WOHA 4Q3RC 3DJ8A 4Q3PA 5RLAA 2PLLA 3TH7A 3MFWA 4Q3SA 4IU5A 1RLAA 1HQFA 3E6VA 3GN0A 1PQ3A 3LHLA 4FCKA 4DZ4A 2ZAVA 1P8RA 3TF3A 2EIVA 4GWCA 1HQGA 4Q42A 4IE1A 4GSMA 1T4PA 3GMZA 3SJTA 1CEVA 3MJLA 4CEVA 4MYKA 4IU0A 4MYLA 4GWDA 3SL1A 4Q3RA 4MYFA 3THHA 1P8PA 3THJA 4ITYA 1P8NA 4IXVA 1T5GA 4Q3UA 3SKKA 1T4RA 1WOIA 3E8ZA 3F80A 4Q3QA 1GQ7A 5HJ9A 2CEVA 1ZPGA 1HQHA 5HJAA 4Q41A 1P8QA 4HZEA 3NIQA 4RHKA 1P8OA 4RHIA 2A0MA 4I06A 4IE3A 1D3VA 1ZPEA 1GQ6A 2PHOA 1TBLA 1TBHA 1T4SA 4IXUA 1TA1A 3PZLA 4FCIA 4GSVA 4Q3VA 4RHJA 2AEBA 3KV2A 3E8QA 4IE2A 4RHLA 1HQXA 4IU1A 4RHQA 4RHMA 3MMRA 5CEVA 4HXQA 3SL0A 1HQ5A 3E9BA 1WVAA 4Q40A 1R1OA 1XFKA 1P8SA 3RLAA 4HWWA 3MFVA 2RLAA 3THEA 2EF4A 1WVBA 4IU4A 4MXRA 1WOGA 4RLAA 1P8MA 2PHAA 3LP4A
chains in the Genus database with same CATH superfamily
1T4TA 2EF5A 3NIOA 5EEFA 1T5FA 3LP7A 4G3HA 2VQWG 1TBJA 3M1RA 4GSZA 3E6KA 3CEVA 1ZZ0A 2VQQA 5EFNA 5G0JA 3RQDA 4Q3TA 5G0GA 2GH6A 1WOHA 3NIPA 3DJ8A 4Q3RC 3ZNRA 4Q3PA 1ZZ1A 5RLAA 2PLLA 3C0ZA 3MFWA 4ZUNA 3TH7A 4Q3SA 3Q9EA 1ZZ3A 5EFJD 4IU5A 5THTA 4BKXB 1RLAA 1HQFA 3E6VA 3Q9BA 5EF7A 3GN0A 1PQ3A 3LHLA 4FCKA 4DZ4A 5JI5A 2ZAVA 4LY1A 1P8RA 3TF3A 2EIVA 4GWCA 1T67A 3F06A 1HQGA 4Q42A 4IE1A 4GSMA 1T4PA 4QA1A 5G13A 3GMZA 4RN2A 2VQOA 1T69A 4QA4A 3SJTA 1CEVA 5LI3A 3MJLA 4CEVA 3MAXA 4IU0A 3F0RA 4MYLA 4MYKA 4GWDA 4CQFA 1VKGA 4QA0A 3SL1A 4Q3RA 1W22A 5BWZA 4CBTA 4MYFA 3THHA 1P8PA 5EFHA 3THJA 5G17A 4ITYA 3EZPA 5D1CA 5THUA 1P8NA 4IXVA 1T5GA 5EEIA 3EZTA 4Q3UA 5D1DA 3Q9FA 3SKKA 1T4RA 1WOIA 3E8ZA 3F80A 2VQVA 4MYNA 5EENA 5G3WA 4Q3QA 1GQ7A 5EF8A 3C0YA 5HJ9A 2CEVA 2V5WA 5IX0A 1ZPGA 4BZ6A 5DC6A 2V5XA 1HQHA 5D1BA 5HJAA 5G1CA 3MZ7A 4QA6A 4Q41A 5G0YA 5EEMA 4ZURA 1P8QA 5G1BA 5THSA 4HZEA 3MZ6A 3NIQA 4RHKA 4BZ7A 5DC7A 4BZ8A 1P8OA 3ZNSA 4CBYA 4ZUQA 4RHIA 2A0MA 4RN1A 4BZ9A 4QA2A 4I06A 5G10A 5G11A 5ICNB 4ZUMA 4IE3A 4A69A 4QA3A 1D3VA 4ZUOA 1ZPEA 5DC8A 1GQ6A 3MZ4A 2VCGA 4QA5A 5FUEA 2PHOA 1TBLA 1TBHA 1T4SA 4IXUA 4LXZA 1TA1A 3PZLA 5G0XA 5A2SA 4FCIA 4GSVA 4Q3VA 5EEKA 4RHJA 2AEBA 5G12A 1C3PA 3MZ3A 5G0IA 3F07A 5IWGA 5G0HA 3KV2A 3MENA 5THVA 5EFBD 3C10A 5FCWA 3EW8A 3Q9CA 5DC5A 3E8QA 4BZ5A 4IE2A 1C3SA 1T64A 4RHLA 1C3RA 1HQXA 5EFGA 4IU1A 4RHQA 5EFKB 4RHMA 2VQJA 3MMRA 5CEVA 4HXQA 3SL0A 4ZUPA 3SFFA 1HQ5A 3E9BA 1WVAA 4Q40A 1R1OA 2VQMA 1XFKA 3EWFA 1P8SA 3RLAA 4HWWA 3MFVA 3SFHA 4RN0A 2RLAA 3THEA 2EF4A 4QA7A 1WVBA 4IU4A 4MXRA 1WOGA 4RLAA 1P8MA 2PHAA 3LP4A 5G1AA
chains in the Genus database with same CATH topology
1T4TA 2EF5A 3NIOA 1T5FA 3LP7A 4G3HA 3M1RA 1TBJA 4GSZA 4MYNA 3E6KA 3CEVA 4Q3TA 3NIPA 1WOHA 4Q3RC 3DJ8A 4Q3PA 5RLAA 2PLLA 3TH7A 3MFWA 4Q3SA 4IU5A 1RLAA 1HQFA 3E6VA 3GN0A 1PQ3A 3LHLA 4FCKA 4DZ4A 2ZAVA 1P8RA 3TF3A 2EIVA 4GWCA 1HQGA 4Q42A 4IE1A 4GSMA 1T4PA 3GMZA 3SJTA 1CEVA 3MJLA 4CEVA 4MYKA 4IU0A 4MYLA 4GWDA 3SL1A 4Q3RA 4MYFA 3THHA 1P8PA 3THJA 4ITYA 1P8NA 4IXVA 1T5GA 4Q3UA 3SKKA 1T4RA 1WOIA 3E8ZA 3F80A 4Q3QA 1GQ7A 5HJ9A 2CEVA 1ZPGA 1HQHA 5HJAA 4Q41A 1P8QA 4HZEA 3NIQA 4RHKA 1P8OA 4RHIA 2A0MA 4I06A 4IE3A 1D3VA 1ZPEA 1GQ6A 2PHOA 1TBLA 1TBHA 1T4SA 4IXUA 1TA1A 3PZLA 4FCIA 4GSVA 4Q3VA 4RHJA 2AEBA 3KV2A 3E8QA 4IE2A 4RHLA 1HQXA 4IU1A 4RHQA 4RHMA 3MMRA 5CEVA 4HXQA 3SL0A 1HQ5A 3E9BA 1WVAA 4Q40A 1R1OA 1XFKA 1P8SA 3RLAA 4HWWA 3MFVA 2RLAA 3THEA 2EF4A 1WVBA 4IU4A 4MXRA 1WOGA 4RLAA 1P8MA 2PHAA 3LP4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T4T A;  2EF5 A;  3NIO A;  1T5F A;  3LP7 A;  4G3H A;  3M1R A;  1TBJ A;  4GSZ A;  4MYN A;  3E6K A;  3CEV A;  4Q3T A;  3NIP A;  1WOH A;  4Q3R C;  3DJ8 A;  4Q3P A;  5RLA A;  2PLL A;  3TH7 A;  3MFW A;  4Q3S A;  4IU5 A;  1RLA A;  1HQF A;  3E6V A;  3GN0 A;  1PQ3 A;  3LHL A;  4FCK A;  4DZ4 A;  2ZAV A;  1P8R A;  3TF3 A;  2EIV A;  4GWC A;  1HQG A;  4Q42 A;  4IE1 A;  4GSM A;  1T4P A;  3GMZ A;  3SJT A;  1CEV A;  3MJL A;  4CEV A;  4MYK A;  4IU0 A;  4MYL A;  4GWD A;  3SL1 A;  4Q3R A;  4MYF A;  3THH A;  1P8P A;  3THJ A;  4ITY A;  1P8N A;  4IXV A;  1T5G A;  4Q3U A;  3SKK A;  1T4R A;  1WOI A;  3E8Z A;  3F80 A;  4Q3Q A;  1GQ7 A;  5HJ9 A;  2CEV A;  1ZPG A;  1HQH A;  5HJA A;  4Q41 A;  1P8Q A;  4HZE A;  3NIQ A;  4RHK A;  1P8O A;  4RHI A;  2A0M A;  4I06 A;  4IE3 A;  1D3V A;  1ZPE A;  1GQ6 A;  2PHO A;  1TBL A;  1TBH A;  1T4S A;  4IXU A;  1TA1 A;  3PZL A;  4FCI A;  4GSV A;  4Q3V A;  4RHJ A;  2AEB A;  3KV2 A;  3E8Q A;  4IE2 A;  4RHL A;  1HQX A;  4IU1 A;  4RHQ A;  4RHM A;  3MMR A;  5CEV A;  4HXQ A;  3SL0 A;  1HQ5 A;  3E9B A;  1WVA A;  4Q40 A;  1R1O A;  1XFK A;  1P8S A;  3RLA A;  4HWW A;  3MFV A;  2RLA A;  3THE A;  2EF4 A;  1WVB A;  4IU4 A;  4MXR A;  1WOG A;  4RLA A;  1P8M A;  2PHA A;  3LP4 A; 
#chains in the Genus database with same CATH topology
 1T4T A;  2EF5 A;  3NIO A;  5EEF A;  1T5F A;  3LP7 A;  4G3H A;  2VQW G;  1TBJ A;  3M1R A;  4GSZ A;  3E6K A;  3CEV A;  1ZZ0 A;  2VQQ A;  5EFN A;  5G0J A;  3RQD A;  4Q3T A;  5G0G A;  2GH6 A;  1WOH A;  3NIP A;  3DJ8 A;  4Q3R C;  3ZNR A;  4Q3P A;  1ZZ1 A;  5RLA A;  2PLL A;  3C0Z A;  3MFW A;  4ZUN A;  3TH7 A;  4Q3S A;  3Q9E A;  1ZZ3 A;  5EFJ D;  4IU5 A;  5THT A;  4BKX B;  1RLA A;  1HQF A;  3E6V A;  3Q9B A;  5EF7 A;  3GN0 A;  1PQ3 A;  3LHL A;  4FCK A;  4DZ4 A;  5JI5 A;  2ZAV A;  4LY1 A;  1P8R A;  3TF3 A;  2EIV A;  4GWC A;  1T67 A;  3F06 A;  1HQG A;  4Q42 A;  4IE1 A;  4GSM A;  1T4P A;  4QA1 A;  5G13 A;  3GMZ A;  4RN2 A;  2VQO A;  1T69 A;  4QA4 A;  3SJT A;  1CEV A;  5LI3 A;  3MJL A;  4CEV A;  3MAX A;  4IU0 A;  3F0R A;  4MYL A;  4MYK A;  4GWD A;  4CQF A;  1VKG A;  4QA0 A;  3SL1 A;  4Q3R A;  1W22 A;  5BWZ A;  4CBT A;  4MYF A;  3THH A;  1P8P A;  5EFH A;  3THJ A;  5G17 A;  4ITY A;  3EZP A;  5D1C A;  5THU A;  1P8N A;  4IXV A;  1T5G A;  5EEI A;  3EZT A;  4Q3U A;  5D1D A;  3Q9F A;  3SKK A;  1T4R A;  1WOI A;  3E8Z A;  3F80 A;  2VQV A;  4MYN A;  5EEN A;  5G3W A;  4Q3Q A;  1GQ7 A;  5EF8 A;  3C0Y A;  5HJ9 A;  2CEV A;  2V5W A;  5IX0 A;  1ZPG A;  4BZ6 A;  5DC6 A;  2V5X A;  1HQH A;  5D1B A;  5HJA A;  5G1C A;  3MZ7 A;  4QA6 A;  4Q41 A;  5G0Y A;  5EEM A;  4ZUR A;  1P8Q A;  5G1B A;  5THS A;  4HZE A;  3MZ6 A;  3NIQ A;  4RHK A;  4BZ7 A;  5DC7 A;  4BZ8 A;  1P8O A;  3ZNS A;  4CBY A;  4ZUQ A;  4RHI A;  2A0M A;  4RN1 A;  4BZ9 A;  4QA2 A;  4I06 A;  5G10 A;  5G11 A;  5ICN B;  4ZUM A;  4IE3 A;  4A69 A;  4QA3 A;  1D3V A;  4ZUO A;  1ZPE A;  5DC8 A;  1GQ6 A;  3MZ4 A;  2VCG A;  4QA5 A;  5FUE A;  2PHO A;  1TBL A;  1TBH A;  1T4S A;  4IXU A;  4LXZ A;  1TA1 A;  3PZL A;  5G0X A;  5A2S A;  4FCI A;  4GSV A;  4Q3V A;  5EEK A;  4RHJ A;  2AEB A;  5G12 A;  1C3P A;  3MZ3 A;  5G0I A;  3F07 A;  5IWG A;  5G0H A;  3KV2 A;  3MEN A;  5THV A;  5EFB D;  3C10 A;  5FCW A;  3EW8 A;  3Q9C A;  5DC5 A;  3E8Q A;  4BZ5 A;  4IE2 A;  1C3S A;  1T64 A;  4RHL A;  1C3R A;  1HQX A;  5EFG A;  4IU1 A;  4RHQ A;  5EFK B;  4RHM A;  2VQJ A;  3MMR A;  5CEV A;  4HXQ A;  3SL0 A;  4ZUP A;  3SFF A;  1HQ5 A;  3E9B A;  1WVA A;  4Q40 A;  1R1O A;  2VQM A;  1XFK A;  3EWF A;  1P8S A;  3RLA A;  4HWW A;  3MFV A;  3SFH A;  4RN0 A;  2RLA A;  3THE A;  2EF4 A;  4QA7 A;  1WVB A;  4IU4 A;  4MXR A;  1WOG A;  4RLA A;  1P8M A;  2PHA A;  3LP4 A;  5G1A A; 
#chains in the Genus database with same CATH homology
 1T4T A;  2EF5 A;  3NIO A;  1T5F A;  3LP7 A;  4G3H A;  3M1R A;  1TBJ A;  4GSZ A;  4MYN A;  3E6K A;  3CEV A;  4Q3T A;  3NIP A;  1WOH A;  4Q3R C;  3DJ8 A;  4Q3P A;  5RLA A;  2PLL A;  3TH7 A;  3MFW A;  4Q3S A;  4IU5 A;  1RLA A;  1HQF A;  3E6V A;  3GN0 A;  1PQ3 A;  3LHL A;  4FCK A;  4DZ4 A;  2ZAV A;  1P8R A;  3TF3 A;  2EIV A;  4GWC A;  1HQG A;  4Q42 A;  4IE1 A;  4GSM A;  1T4P A;  3GMZ A;  3SJT A;  1CEV A;  3MJL A;  4CEV A;  4MYK A;  4IU0 A;  4MYL A;  4GWD A;  3SL1 A;  4Q3R A;  4MYF A;  3THH A;  1P8P A;  3THJ A;  4ITY A;  1P8N A;  4IXV A;  1T5G A;  4Q3U A;  3SKK A;  1T4R A;  1WOI A;  3E8Z A;  3F80 A;  4Q3Q A;  1GQ7 A;  5HJ9 A;  2CEV A;  1ZPG A;  1HQH A;  5HJA A;  4Q41 A;  1P8Q A;  4HZE A;  3NIQ A;  4RHK A;  1P8O A;  4RHI A;  2A0M A;  4I06 A;  4IE3 A;  1D3V A;  1ZPE A;  1GQ6 A;  2PHO A;  1TBL A;  1TBH A;  1T4S A;  4IXU A;  1TA1 A;  3PZL A;  4FCI A;  4GSV A;  4Q3V A;  4RHJ A;  2AEB A;  3KV2 A;  3E8Q A;  4IE2 A;  4RHL A;  1HQX A;  4IU1 A;  4RHQ A;  4RHM A;  3MMR A;  5CEV A;  4HXQ A;  3SL0 A;  1HQ5 A;  3E9B A;  1WVA A;  4Q40 A;  1R1O A;  1XFK A;  1P8S A;  3RLA A;  4HWW A;  3MFV A;  2RLA A;  3THE A;  2EF4 A;  1WVB A;  4IU4 A;  4MXR A;  1WOG A;  4RLA A;  1P8M A;  2PHA A;  3LP4 A; 
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