4FCIA

Crystal structure of the mn2+2-human arginase i-agpa complex
Total Genus 109
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
109
sequence length
313
structure length
313
Chain Sequence
SRTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKEQECDVKDYGDLPFADIPNDSPFQIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAITLACFGLAREGNHKPIDY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Binding of the unreactive substrate analog L-2-amino-3-guanidinopropionic acid (dinor-L-arginine) to human arginase I.
pubmed doi rcsb
molecule keywords Arginase-1
molecule tags Hydrolase/hydrolase inhibitor
source organism Homo sapiens
total genus 109
structure length 313
sequence length 313
chains with identical sequence B
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2012-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 4fciA00
1TBJA 1R1OA 4G3HA 1GQ7A 3THHA 3NIQA 4RHLA 5HJ9A 1P8QA 2EIVA 4Q3UA 1T4SA 1ZPEA 3GMZA 4IXUA 4HXQA 4RHIA 3TH7A 2RLAA 4FCKA 3E8ZA 4IU5A 3THEA 3SJTA 1HQXA 2ZAVA 1TA1A 1XFKA 4Q3QA 1T4RA 2CEVA 1WOGA 4IU4A 3PZLA 1RLAA 2EF5A 4RHMA 1T5FA 1P8RA 4Q3RA 4DZ4A 4Q42A 4GSZA 1ZPGA 4I06A 4IXVA 1WVBA 3M1RA 4IE3A 4MXRA 3RLAA 2A0MA 5HJAA 1P8OA 4RHJA 4RHQA 4Q3SA 3SL1A 1WOHA 5RLAA 1T5GA 3THJA 4ITYA 3E8QA 3MFWA 3SL0A 1P8MA 3TF3A 3LP7A 1HQGA 4CEVA 4IU0A 4GWDA 1WOIA 4GSMA 3NIPA 3LP4A 1GQ6A 1P8PA 3SKKA 4IE2A 1P8SA 1P8NA 3E6VA 4FCIA 2AEBA 3E9BA 3F80A 1HQ5A 4RLAA 1T4PA 4GSVA 5CEVA 2PHOA 2EF4A 4Q3VA 4GWCA 3GN0A 1TBHA 4Q3TA 3CEVA 3NIOA 1HQFA 1PQ3A 3E6KA 4IE1A 1HQHA 2PLLA 4MYKA 4HWWA 3LHLA 4MYNA 4Q40A 3DJ8A 3MMRA 4HZEA 4IU1A 3MJLA 3KV2A 4Q3RC 1TBLA 1T4TA 1WVAA 1D3VA 4MYLA 4MYFA 4RHKA 4Q41A 2PHAA 3MFVA 1CEVA 4Q3PA
chains in the Genus database with same CATH superfamily
1TBJA 4ZUQA 4BZ9A 1R1OA 4G3HA 1GQ7A 2VQQA 3NIQA 5EFGA 3THHA 4RHLA 5HJ9A 5G13A 5EFKB 1P8QA 5DC8A 2EIVA 4Q3UA 1T4SA 1ZPEA 3GMZA 4IXUA 4HXQA 4RHIA 3TH7A 4BKXB 4CBYA 2RLAA 4ZUMA 1ZZ1A 3Q9EA 4FCKA 4RN2A 3E8ZA 3MZ7A 2V5WA 4IU5A 5DC5A 3SJTA 1HQXA 2ZAVA 3THEA 5JI5A 1TA1A 2VQOA 1XFKA 4RN1A 4Q3QA 1T4RA 2CEVA 1WOGA 4IU4A 5EEKA 3PZLA 3F0RA 3Q9FA 1RLAA 2EF5A 4RHMA 3SFFA 5G0XA 4QA3A 1T5FA 1P8RA 4Q3RA 5EEIA 5G0JA 4DZ4A 4Q42A 4GSZA 5G10A 4QA5A 5FCWA 1ZPGA 4I06A 4IXVA 1C3PA 1T67A 1WVBA 3M1RA 4IE3A 4MXRA 3MZ6A 5D1DA 3RLAA 5G1CA 4LXZA 2A0MA 3MAXA 5G12A 5HJAA 5EEFA 1P8OA 5G1BA 5IWGA 4RHJA 4RHQA 3EZTA 3MZ3A 4Q3SA 4ZUOA 3SL1A 1WOHA 5RLAA 1T5GA 3THJA 3F06A 5FUEA 2VQMA 5THSA 4QA1A 4QA7A 4ITYA 5G3WA 5EF8A 3E8QA 3MFWA 3Q9CA 3SL0A 1P8MA 1W22A 3TF3A 3ZNRA 4RN0A 4BZ5A 2VQWG 3LP7A 5EEMA 3C10A 5G0YA 5IX0A 5THTA 1HQGA 5G11A 4CEVA 4IU0A 5ICNB 4GWDA 1WOIA 5EENA 5DC6A 4BZ6A 4GSMA 5G0HA 3NIPA 4ZUNA 3LP4A 4BZ8A 1GQ6A 4QA2A 5EFHA 1P8PA 3SFHA 4CQFA 5G0IA 3SKKA 1T64A 3RQDA 4IE2A 1P8SA 1P8NA 3E6VA 4FCIA 2VQVA 2AEBA 3E9BA 3F80A 1HQ5A 4QA6A 1ZZ0A 4RLAA 3C0YA 4BZ7A 2V5XA 1T4PA 4GSVA 5LI3A 4A69A 4ZURA 5CEVA 2PHOA 5THUA 2EF4A 5D1CA 3MENA 2GH6A 4Q3VA 3EW8A 3EZPA 3MZ4A 4GWCA 5D1BA 5BWZA 3GN0A 1TBHA 4Q3TA 4QA0A 1C3SA 2VQJA 1C3RA 3CEVA 1HQFA 1PQ3A 3E6KA 3NIOA 4IE1A 4ZUPA 5DC7A 3F07A 1HQHA 2PLLA 4LY1A 3ZNSA 4MYKA 4HWWA 3LHLA 3C0ZA 5G17A 3EWFA 4MYNA 4Q40A 3DJ8A 2VCGA 3MMRA 4HZEA 4IU1A 5EFJD 3MJLA 1ZZ3A 3KV2A 4Q3RC 1TBLA 5THVA 5G1AA 4CBTA 1T4TA 1VKGA 4QA4A 5EFNA 5EFBD 5EF7A 1WVAA 1D3VA 4MYLA 4MYFA 1T69A 5A2SA 4RHKA 4Q41A 5G0GA 2PHAA 3MFVA 3Q9BA 1CEVA 4Q3PA
chains in the Genus database with same CATH topology
1TBJA 1R1OA 4G3HA 1GQ7A 3THHA 3NIQA 4RHLA 5HJ9A 1P8QA 2EIVA 4Q3UA 1T4SA 1ZPEA 3GMZA 4IXUA 4HXQA 4RHIA 3TH7A 2RLAA 4FCKA 3E8ZA 4IU5A 3THEA 3SJTA 1HQXA 2ZAVA 1TA1A 1XFKA 4Q3QA 1T4RA 2CEVA 1WOGA 4IU4A 3PZLA 1RLAA 2EF5A 4RHMA 1T5FA 1P8RA 4Q3RA 4DZ4A 4Q42A 4GSZA 1ZPGA 4I06A 4IXVA 1WVBA 3M1RA 4IE3A 4MXRA 3RLAA 2A0MA 5HJAA 1P8OA 4RHJA 4RHQA 4Q3SA 3SL1A 1WOHA 5RLAA 1T5GA 3THJA 4ITYA 3E8QA 3MFWA 3SL0A 1P8MA 3TF3A 3LP7A 1HQGA 4CEVA 4IU0A 4GWDA 1WOIA 4GSMA 3NIPA 3LP4A 1GQ6A 1P8PA 3SKKA 4IE2A 1P8SA 1P8NA 3E6VA 4FCIA 2AEBA 3E9BA 3F80A 1HQ5A 4RLAA 1T4PA 4GSVA 5CEVA 2PHOA 2EF4A 4Q3VA 4GWCA 3GN0A 1TBHA 4Q3TA 3CEVA 3NIOA 1HQFA 1PQ3A 3E6KA 4IE1A 1HQHA 2PLLA 4MYKA 4HWWA 3LHLA 4MYNA 4Q40A 3DJ8A 3MMRA 4HZEA 4IU1A 3MJLA 3KV2A 4Q3RC 1TBLA 1T4TA 1WVAA 1D3VA 4MYLA 4MYFA 4RHKA 4Q41A 2PHAA 3MFVA 1CEVA 4Q3PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TBJ A;  1R1O A;  4G3H A;  1GQ7 A;  3THH A;  3NIQ A;  4RHL A;  5HJ9 A;  1P8Q A;  2EIV A;  4Q3U A;  1T4S A;  1ZPE A;  3GMZ A;  4IXU A;  4HXQ A;  4RHI A;  3TH7 A;  2RLA A;  4FCK A;  3E8Z A;  4IU5 A;  3THE A;  3SJT A;  1HQX A;  2ZAV A;  1TA1 A;  1XFK A;  4Q3Q A;  1T4R A;  2CEV A;  1WOG A;  4IU4 A;  3PZL A;  1RLA A;  2EF5 A;  4RHM A;  1T5F A;  1P8R A;  4Q3R A;  4DZ4 A;  4Q42 A;  4GSZ A;  1ZPG A;  4I06 A;  4IXV A;  1WVB A;  3M1R A;  4IE3 A;  4MXR A;  3RLA A;  2A0M A;  5HJA A;  1P8O A;  4RHJ A;  4RHQ A;  4Q3S A;  3SL1 A;  1WOH A;  5RLA A;  1T5G A;  3THJ A;  4ITY A;  3E8Q A;  3MFW A;  3SL0 A;  1P8M A;  3TF3 A;  3LP7 A;  1HQG A;  4CEV A;  4IU0 A;  4GWD A;  1WOI A;  4GSM A;  3NIP A;  3LP4 A;  1GQ6 A;  1P8P A;  3SKK A;  4IE2 A;  1P8S A;  1P8N A;  3E6V A;  4FCI A;  2AEB A;  3E9B A;  3F80 A;  1HQ5 A;  4RLA A;  1T4P A;  4GSV A;  5CEV A;  2PHO A;  2EF4 A;  4Q3V A;  4GWC A;  3GN0 A;  1TBH A;  4Q3T A;  3CEV A;  3NIO A;  1HQF A;  1PQ3 A;  3E6K A;  4IE1 A;  1HQH A;  2PLL A;  4MYK A;  4HWW A;  3LHL A;  4MYN A;  4Q40 A;  3DJ8 A;  3MMR A;  4HZE A;  4IU1 A;  3MJL A;  3KV2 A;  4Q3R C;  1TBL A;  1T4T A;  1WVA A;  1D3V A;  4MYL A;  4MYF A;  4RHK A;  4Q41 A;  2PHA A;  3MFV A;  1CEV A;  4Q3P A; 
#chains in the Genus database with same CATH topology
 1TBJ A;  4ZUQ A;  4BZ9 A;  1R1O A;  4G3H A;  1GQ7 A;  2VQQ A;  3NIQ A;  5EFG A;  3THH A;  4RHL A;  5HJ9 A;  5G13 A;  5EFK B;  1P8Q A;  5DC8 A;  2EIV A;  4Q3U A;  1T4S A;  1ZPE A;  3GMZ A;  4IXU A;  4HXQ A;  4RHI A;  3TH7 A;  4BKX B;  4CBY A;  2RLA A;  4ZUM A;  1ZZ1 A;  3Q9E A;  4FCK A;  4RN2 A;  3E8Z A;  3MZ7 A;  2V5W A;  4IU5 A;  5DC5 A;  3SJT A;  1HQX A;  2ZAV A;  3THE A;  5JI5 A;  1TA1 A;  2VQO A;  1XFK A;  4RN1 A;  4Q3Q A;  1T4R A;  2CEV A;  1WOG A;  4IU4 A;  5EEK A;  3PZL A;  3F0R A;  3Q9F A;  1RLA A;  2EF5 A;  4RHM A;  3SFF A;  5G0X A;  4QA3 A;  1T5F A;  1P8R A;  4Q3R A;  5EEI A;  5G0J A;  4DZ4 A;  4Q42 A;  4GSZ A;  5G10 A;  4QA5 A;  5FCW A;  1ZPG A;  4I06 A;  4IXV A;  1C3P A;  1T67 A;  1WVB A;  3M1R A;  4IE3 A;  4MXR A;  3MZ6 A;  5D1D A;  3RLA A;  5G1C A;  4LXZ A;  2A0M A;  3MAX A;  5G12 A;  5HJA A;  5EEF A;  1P8O A;  5G1B A;  5IWG A;  4RHJ A;  4RHQ A;  3EZT A;  3MZ3 A;  4Q3S A;  4ZUO A;  3SL1 A;  1WOH A;  5RLA A;  1T5G A;  3THJ A;  3F06 A;  5FUE A;  2VQM A;  5THS A;  4QA1 A;  4QA7 A;  4ITY A;  5G3W A;  5EF8 A;  3E8Q A;  3MFW A;  3Q9C A;  3SL0 A;  1P8M A;  1W22 A;  3TF3 A;  3ZNR A;  4RN0 A;  4BZ5 A;  2VQW G;  3LP7 A;  5EEM A;  3C10 A;  5G0Y A;  5IX0 A;  5THT A;  1HQG A;  5G11 A;  4CEV A;  4IU0 A;  5ICN B;  4GWD A;  1WOI A;  5EEN A;  5DC6 A;  4BZ6 A;  4GSM A;  5G0H A;  3NIP A;  4ZUN A;  3LP4 A;  4BZ8 A;  1GQ6 A;  4QA2 A;  5EFH A;  1P8P A;  3SFH A;  4CQF A;  5G0I A;  3SKK A;  1T64 A;  3RQD A;  4IE2 A;  1P8S A;  1P8N A;  3E6V A;  4FCI A;  2VQV A;  2AEB A;  3E9B A;  3F80 A;  1HQ5 A;  4QA6 A;  1ZZ0 A;  4RLA A;  3C0Y A;  4BZ7 A;  2V5X A;  1T4P A;  4GSV A;  5LI3 A;  4A69 A;  4ZUR A;  5CEV A;  2PHO A;  5THU A;  2EF4 A;  5D1C A;  3MEN A;  2GH6 A;  4Q3V A;  3EW8 A;  3EZP A;  3MZ4 A;  4GWC A;  5D1B A;  5BWZ A;  3GN0 A;  1TBH A;  4Q3T A;  4QA0 A;  1C3S A;  2VQJ A;  1C3R A;  3CEV A;  1HQF A;  1PQ3 A;  3E6K A;  3NIO A;  4IE1 A;  4ZUP A;  5DC7 A;  3F07 A;  1HQH A;  2PLL A;  4LY1 A;  3ZNS A;  4MYK A;  4HWW A;  3LHL A;  3C0Z A;  5G17 A;  3EWF A;  4MYN A;  4Q40 A;  3DJ8 A;  2VCG A;  3MMR A;  4HZE A;  4IU1 A;  5EFJ D;  3MJL A;  1ZZ3 A;  3KV2 A;  4Q3R C;  1TBL A;  5THV A;  5G1A A;  4CBT A;  1T4T A;  1VKG A;  4QA4 A;  5EFN A;  5EFB D;  5EF7 A;  1WVA A;  1D3V A;  4MYL A;  4MYF A;  1T69 A;  5A2S A;  4RHK A;  4Q41 A;  5G0G A;  2PHA A;  3MFV A;  3Q9B A;  1CEV A;  4Q3P A; 
#chains in the Genus database with same CATH homology
 1TBJ A;  1R1O A;  4G3H A;  1GQ7 A;  3THH A;  3NIQ A;  4RHL A;  5HJ9 A;  1P8Q A;  2EIV A;  4Q3U A;  1T4S A;  1ZPE A;  3GMZ A;  4IXU A;  4HXQ A;  4RHI A;  3TH7 A;  2RLA A;  4FCK A;  3E8Z A;  4IU5 A;  3THE A;  3SJT A;  1HQX A;  2ZAV A;  1TA1 A;  1XFK A;  4Q3Q A;  1T4R A;  2CEV A;  1WOG A;  4IU4 A;  3PZL A;  1RLA A;  2EF5 A;  4RHM A;  1T5F A;  1P8R A;  4Q3R A;  4DZ4 A;  4Q42 A;  4GSZ A;  1ZPG A;  4I06 A;  4IXV A;  1WVB A;  3M1R A;  4IE3 A;  4MXR A;  3RLA A;  2A0M A;  5HJA A;  1P8O A;  4RHJ A;  4RHQ A;  4Q3S A;  3SL1 A;  1WOH A;  5RLA A;  1T5G A;  3THJ A;  4ITY A;  3E8Q A;  3MFW A;  3SL0 A;  1P8M A;  3TF3 A;  3LP7 A;  1HQG A;  4CEV A;  4IU0 A;  4GWD A;  1WOI A;  4GSM A;  3NIP A;  3LP4 A;  1GQ6 A;  1P8P A;  3SKK A;  4IE2 A;  1P8S A;  1P8N A;  3E6V A;  4FCI A;  2AEB A;  3E9B A;  3F80 A;  1HQ5 A;  4RLA A;  1T4P A;  4GSV A;  5CEV A;  2PHO A;  2EF4 A;  4Q3V A;  4GWC A;  3GN0 A;  1TBH A;  4Q3T A;  3CEV A;  3NIO A;  1HQF A;  1PQ3 A;  3E6K A;  4IE1 A;  1HQH A;  2PLL A;  4MYK A;  4HWW A;  3LHL A;  4MYN A;  4Q40 A;  3DJ8 A;  3MMR A;  4HZE A;  4IU1 A;  3MJL A;  3KV2 A;  4Q3R C;  1TBL A;  1T4T A;  1WVA A;  1D3V A;  4MYL A;  4MYF A;  4RHK A;  4Q41 A;  2PHA A;  3MFV A;  1CEV A;  4Q3P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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