4FCIA

Crystal structure of the mn2+2-human arginase i-agpa complex
Total Genus 109
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
109
sequence length
313
structure length
313
Chain Sequence
SRTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKEQECDVKDYGDLPFADIPNDSPFQIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAITLACFGLAREGNHKPIDY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Binding of the unreactive substrate analog L-2-amino-3-guanidinopropionic acid (dinor-L-arginine) to human arginase I.
pubmed doi rcsb
molecule tags Hydrolase/hydrolase inhibitor
source organism Homo sapiens
molecule keywords Arginase-1
total genus 109
structure length 313
sequence length 313
chains with identical sequence B
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2012-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 4fciA00
4RHMA 1TBJA 4IE1A 1WVAA 4Q3RA 4Q3QA 3LHLA 4MYLA 2AEBA 4Q3UA 1T5GA 4Q3VA 4GSMA 4IU4A 1HQHA 4RHQA 2RLAA 1ZPEA 4IXVA 2A0MA 3E9BA 3M1RA 1P8RA 1T5FA 3THHA 3PZLA 1HQ5A 4FCIA 4IU5A 2EIVA 4RLAA 1CEVA 4HWWA 1WOGA 4Q3TA 4G3HA 3RLAA 1PQ3A 4GSVA 4Q41A 3TH7A 4RHIA 1HQXA 1WOHA 2PHOA 3MMRA 5RLAA 1D3VA 3THEA 1WOIA 4MYFA 3SKKA 4HZEA 2CEVA 3GMZA 4RHKA 4Q3RC 3THJA 1P8NA 3SL1A 4IE2A 1R1OA 1TBHA 3MFVA 5HJ9A 4HXQA 4Q40A 4IU0A 2PHAA 1T4RA 3DJ8A 1T4TA 4I06A 1P8OA 4IE3A 4MYKA 4MYNA 3E8QA 1TA1A 3E6VA 4Q3PA 3LP4A 4MXRA 1TBLA 2PLLA 3E6KA 5HJAA 3TF3A 4ITYA 4GSZA 4IU1A 4FCKA 4Q42A 3GN0A 1XFKA 4RHLA 1P8MA 3F80A 4CEVA 4GWCA 3E8ZA 1GQ7A 1P8QA 3NIQA 4Q3SA 3CEVA 1WVBA 3KV2A 4IXUA 3MJLA 1GQ6A 1HQFA 2EF4A 2EF5A 4RHJA 1HQGA 3NIOA 3SJTA 4GWDA 3NIPA 3SL0A 2ZAVA 1T4PA 5CEVA 1P8SA 1P8PA 3LP7A 1T4SA 4DZ4A 1RLAA 3MFWA 1ZPGA
chains in the Genus database with same CATH superfamily
4RHMA 1TBJA 4IE1A 5THVA 3MZ7A 1WVAA 4Q3RA 4Q3QA 3LHLA 4ZUMA 4MYLA 1W22A 2AEBA 2VQMA 4Q3UA 5DC5A 5FUEA 1T5GA 5G1AA 4Q3VA 4GSMA 5DC7A 4IU4A 1HQHA 4RHQA 5EFHA 2VQVA 2RLAA 1ZPEA 4IXVA 2A0MA 3E9BA 5G0GA 4BZ6A 4QA1A 3M1RA 3C0YA 5FCWA 1P8RA 1T5FA 3THHA 3PZLA 1HQ5A 2V5XA 4FCIA 5G1CA 1C3RA 4BZ8A 3EZTA 3Q9BA 4IU5A 5THTA 2EIVA 3F07A 2VQOA 4RLAA 3F0RA 4QA4A 1CEVA 1T69A 2VQJA 4HWWA 4QA5A 1WOGA 4CQFA 4Q3TA 5G0JA 4G3HA 5IX0A 5DC6A 3RLAA 1PQ3A 5EF7A 5A2SA 5D1DA 1T67A 4GSVA 5G1BA 4Q41A 3TH7A 4RHIA 1HQXA 1WOHA 2PHOA 3MMRA 4RN1A 1D3VA 5DC8A 5EFNA 5RLAA 3THEA 3Q9CA 5G11A 1WOIA 4CBYA 4MYFA 3MENA 4RN2A 3SKKA 4HZEA 2VCGA 2CEVA 3GMZA 3ZNSA 4RHKA 5EEKA 4Q3RC 3THJA 3C10A 1P8NA 4QA3A 3SL1A 1C3PA 5G0YA 1ZZ1A 4IE2A 4QA6A 3EZPA 4BZ5A 5LI3A 1R1OA 1TBHA 3MFVA 5HJ9A 4CBTA 4HXQA 4Q40A 3ZNRA 4IU0A 4BZ9A 2PHAA 1T4RA 3Q9FA 3DJ8A 1T4TA 4I06A 5ICNB 1P8OA 4IE3A 5EFJD 4MYKA 4MYNA 3E8QA 1TA1A 3E6VA 4BZ7A 4Q3PA 5G17A 5THSA 3LP4A 5EENA 4MXRA 5D1CA 3C0ZA 1TBLA 1ZZ3A 4BKXB 5EEFA 2PLLA 3E6KA 5HJAA 3TF3A 5D1BA 3SFHA 4ITYA 5EF8A 4GSZA 4IU1A 4FCKA 2GH6A 4Q42A 1C3SA 3GN0A 1XFKA 3MZ4A 1P8MA 4LY1A 3F80A 4RHLA 5JI5A 4ZUOA 3RQDA 5G0XA 4ZUQA 4CEVA 5G0HA 4GWCA 4QA2A 5G10A 5IWGA 3MZ6A 3E8ZA 5THUA 3Q9EA 1GQ7A 3F06A 1P8QA 1T64A 4RN0A 3EWFA 1ZZ0A 3NIQA 5G0IA 4Q3SA 3CEVA 1WVBA 3EW8A 3KV2A 4IXUA 3SFFA 5G13A 3MJLA 3MZ3A 3MAXA 5EFGA 5G12A 5EEIA 1GQ6A 4QA0A 1HQFA 4ZUPA 2EF4A 1VKGA 2EF5A 4RHJA 1HQGA 4QA7A 3NIOA 3SJTA 4ZURA 2V5WA 4GWDA 5EEMA 3NIPA 3SL0A 2ZAVA 1T4PA 4ZUNA 5CEVA 1P8SA 5EFBD 5BWZA 1P8PA 3LP7A 5EFKB 4LXZA 1T4SA 5G3WA 4DZ4A 4A69A 2VQQA 1RLAA 3MFWA 2VQWG 1ZPGA
chains in the Genus database with same CATH topology
4RHMA 1TBJA 4IE1A 1WVAA 4Q3RA 4Q3QA 3LHLA 4MYLA 2AEBA 4Q3UA 1T5GA 4Q3VA 4GSMA 4IU4A 1HQHA 4RHQA 2RLAA 1ZPEA 4IXVA 2A0MA 3E9BA 3M1RA 1P8RA 1T5FA 3THHA 3PZLA 1HQ5A 4FCIA 4IU5A 2EIVA 4RLAA 1CEVA 4HWWA 1WOGA 4Q3TA 4G3HA 3RLAA 1PQ3A 4GSVA 4Q41A 3TH7A 4RHIA 1HQXA 1WOHA 2PHOA 3MMRA 5RLAA 1D3VA 3THEA 1WOIA 4MYFA 3SKKA 4HZEA 2CEVA 3GMZA 4RHKA 4Q3RC 3THJA 1P8NA 3SL1A 4IE2A 1R1OA 1TBHA 3MFVA 5HJ9A 4HXQA 4Q40A 4IU0A 2PHAA 1T4RA 3DJ8A 1T4TA 4I06A 1P8OA 4IE3A 4MYKA 4MYNA 3E8QA 1TA1A 3E6VA 4Q3PA 3LP4A 4MXRA 1TBLA 2PLLA 3E6KA 5HJAA 3TF3A 4ITYA 4GSZA 4IU1A 4FCKA 4Q42A 3GN0A 1XFKA 4RHLA 1P8MA 3F80A 4CEVA 4GWCA 3E8ZA 1GQ7A 1P8QA 3NIQA 4Q3SA 3CEVA 1WVBA 3KV2A 4IXUA 3MJLA 1GQ6A 1HQFA 2EF4A 2EF5A 4RHJA 1HQGA 3NIOA 3SJTA 4GWDA 3NIPA 3SL0A 2ZAVA 1T4PA 5CEVA 1P8SA 1P8PA 3LP7A 1T4SA 4DZ4A 1RLAA 3MFWA 1ZPGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RHM A;  1TBJ A;  4IE1 A;  1WVA A;  4Q3R A;  4Q3Q A;  3LHL A;  4MYL A;  2AEB A;  4Q3U A;  1T5G A;  4Q3V A;  4GSM A;  4IU4 A;  1HQH A;  4RHQ A;  2RLA A;  1ZPE A;  4IXV A;  2A0M A;  3E9B A;  3M1R A;  1P8R A;  1T5F A;  3THH A;  3PZL A;  1HQ5 A;  4FCI A;  4IU5 A;  2EIV A;  4RLA A;  1CEV A;  4HWW A;  1WOG A;  4Q3T A;  4G3H A;  3RLA A;  1PQ3 A;  4GSV A;  4Q41 A;  3TH7 A;  4RHI A;  1HQX A;  1WOH A;  2PHO A;  3MMR A;  5RLA A;  1D3V A;  3THE A;  1WOI A;  4MYF A;  3SKK A;  4HZE A;  2CEV A;  3GMZ A;  4RHK A;  4Q3R C;  3THJ A;  1P8N A;  3SL1 A;  4IE2 A;  1R1O A;  1TBH A;  3MFV A;  5HJ9 A;  4HXQ A;  4Q40 A;  4IU0 A;  2PHA A;  1T4R A;  3DJ8 A;  1T4T A;  4I06 A;  1P8O A;  4IE3 A;  4MYK A;  4MYN A;  3E8Q A;  1TA1 A;  3E6V A;  4Q3P A;  3LP4 A;  4MXR A;  1TBL A;  2PLL A;  3E6K A;  5HJA A;  3TF3 A;  4ITY A;  4GSZ A;  4IU1 A;  4FCK A;  4Q42 A;  3GN0 A;  1XFK A;  4RHL A;  1P8M A;  3F80 A;  4CEV A;  4GWC A;  3E8Z A;  1GQ7 A;  1P8Q A;  3NIQ A;  4Q3S A;  3CEV A;  1WVB A;  3KV2 A;  4IXU A;  3MJL A;  1GQ6 A;  1HQF A;  2EF4 A;  2EF5 A;  4RHJ A;  1HQG A;  3NIO A;  3SJT A;  4GWD A;  3NIP A;  3SL0 A;  2ZAV A;  1T4P A;  5CEV A;  1P8S A;  1P8P A;  3LP7 A;  1T4S A;  4DZ4 A;  1RLA A;  3MFW A;  1ZPG A; 
#chains in the Genus database with same CATH topology
 4RHM A;  1TBJ A;  4IE1 A;  5THV A;  3MZ7 A;  1WVA A;  4Q3R A;  4Q3Q A;  3LHL A;  4ZUM A;  4MYL A;  1W22 A;  2AEB A;  2VQM A;  4Q3U A;  5DC5 A;  5FUE A;  1T5G A;  5G1A A;  4Q3V A;  4GSM A;  5DC7 A;  4IU4 A;  1HQH A;  4RHQ A;  5EFH A;  2VQV A;  2RLA A;  1ZPE A;  4IXV A;  2A0M A;  3E9B A;  5G0G A;  4BZ6 A;  4QA1 A;  3M1R A;  3C0Y A;  5FCW A;  1P8R A;  1T5F A;  3THH A;  3PZL A;  1HQ5 A;  2V5X A;  4FCI A;  5G1C A;  1C3R A;  4BZ8 A;  3EZT A;  3Q9B A;  4IU5 A;  5THT A;  2EIV A;  3F07 A;  2VQO A;  4RLA A;  3F0R A;  4QA4 A;  1CEV A;  1T69 A;  2VQJ A;  4HWW A;  4QA5 A;  1WOG A;  4CQF A;  4Q3T A;  5G0J A;  4G3H A;  5IX0 A;  5DC6 A;  3RLA A;  1PQ3 A;  5EF7 A;  5A2S A;  5D1D A;  1T67 A;  4GSV A;  5G1B A;  4Q41 A;  3TH7 A;  4RHI A;  1HQX A;  1WOH A;  2PHO A;  3MMR A;  4RN1 A;  1D3V A;  5DC8 A;  5EFN A;  5RLA A;  3THE A;  3Q9C A;  5G11 A;  1WOI A;  4CBY A;  4MYF A;  3MEN A;  4RN2 A;  3SKK A;  4HZE A;  2VCG A;  2CEV A;  3GMZ A;  3ZNS A;  4RHK A;  5EEK A;  4Q3R C;  3THJ A;  3C10 A;  1P8N A;  4QA3 A;  3SL1 A;  1C3P A;  5G0Y A;  1ZZ1 A;  4IE2 A;  4QA6 A;  3EZP A;  4BZ5 A;  5LI3 A;  1R1O A;  1TBH A;  3MFV A;  5HJ9 A;  4CBT A;  4HXQ A;  4Q40 A;  3ZNR A;  4IU0 A;  4BZ9 A;  2PHA A;  1T4R A;  3Q9F A;  3DJ8 A;  1T4T A;  4I06 A;  5ICN B;  1P8O A;  4IE3 A;  5EFJ D;  4MYK A;  4MYN A;  3E8Q A;  1TA1 A;  3E6V A;  4BZ7 A;  4Q3P A;  5G17 A;  5THS A;  3LP4 A;  5EEN A;  4MXR A;  5D1C A;  3C0Z A;  1TBL A;  1ZZ3 A;  4BKX B;  5EEF A;  2PLL A;  3E6K A;  5HJA A;  3TF3 A;  5D1B A;  3SFH A;  4ITY A;  5EF8 A;  4GSZ A;  4IU1 A;  4FCK A;  2GH6 A;  4Q42 A;  1C3S A;  3GN0 A;  1XFK A;  3MZ4 A;  1P8M A;  4LY1 A;  3F80 A;  4RHL A;  5JI5 A;  4ZUO A;  3RQD A;  5G0X A;  4ZUQ A;  4CEV A;  5G0H A;  4GWC A;  4QA2 A;  5G10 A;  5IWG A;  3MZ6 A;  3E8Z A;  5THU A;  3Q9E A;  1GQ7 A;  3F06 A;  1P8Q A;  1T64 A;  4RN0 A;  3EWF A;  1ZZ0 A;  3NIQ A;  5G0I A;  4Q3S A;  3CEV A;  1WVB A;  3EW8 A;  3KV2 A;  4IXU A;  3SFF A;  5G13 A;  3MJL A;  3MZ3 A;  3MAX A;  5EFG A;  5G12 A;  5EEI A;  1GQ6 A;  4QA0 A;  1HQF A;  4ZUP A;  2EF4 A;  1VKG A;  2EF5 A;  4RHJ A;  1HQG A;  4QA7 A;  3NIO A;  3SJT A;  4ZUR A;  2V5W A;  4GWD A;  5EEM A;  3NIP A;  3SL0 A;  2ZAV A;  1T4P A;  4ZUN A;  5CEV A;  1P8S A;  5EFB D;  5BWZ A;  1P8P A;  3LP7 A;  5EFK B;  4LXZ A;  1T4S A;  5G3W A;  4DZ4 A;  4A69 A;  2VQQ A;  1RLA A;  3MFW A;  2VQW G;  1ZPG A; 
#chains in the Genus database with same CATH homology
 4RHM A;  1TBJ A;  4IE1 A;  1WVA A;  4Q3R A;  4Q3Q A;  3LHL A;  4MYL A;  2AEB A;  4Q3U A;  1T5G A;  4Q3V A;  4GSM A;  4IU4 A;  1HQH A;  4RHQ A;  2RLA A;  1ZPE A;  4IXV A;  2A0M A;  3E9B A;  3M1R A;  1P8R A;  1T5F A;  3THH A;  3PZL A;  1HQ5 A;  4FCI A;  4IU5 A;  2EIV A;  4RLA A;  1CEV A;  4HWW A;  1WOG A;  4Q3T A;  4G3H A;  3RLA A;  1PQ3 A;  4GSV A;  4Q41 A;  3TH7 A;  4RHI A;  1HQX A;  1WOH A;  2PHO A;  3MMR A;  5RLA A;  1D3V A;  3THE A;  1WOI A;  4MYF A;  3SKK A;  4HZE A;  2CEV A;  3GMZ A;  4RHK A;  4Q3R C;  3THJ A;  1P8N A;  3SL1 A;  4IE2 A;  1R1O A;  1TBH A;  3MFV A;  5HJ9 A;  4HXQ A;  4Q40 A;  4IU0 A;  2PHA A;  1T4R A;  3DJ8 A;  1T4T A;  4I06 A;  1P8O A;  4IE3 A;  4MYK A;  4MYN A;  3E8Q A;  1TA1 A;  3E6V A;  4Q3P A;  3LP4 A;  4MXR A;  1TBL A;  2PLL A;  3E6K A;  5HJA A;  3TF3 A;  4ITY A;  4GSZ A;  4IU1 A;  4FCK A;  4Q42 A;  3GN0 A;  1XFK A;  4RHL A;  1P8M A;  3F80 A;  4CEV A;  4GWC A;  3E8Z A;  1GQ7 A;  1P8Q A;  3NIQ A;  4Q3S A;  3CEV A;  1WVB A;  3KV2 A;  4IXU A;  3MJL A;  1GQ6 A;  1HQF A;  2EF4 A;  2EF5 A;  4RHJ A;  1HQG A;  3NIO A;  3SJT A;  4GWD A;  3NIP A;  3SL0 A;  2ZAV A;  1T4P A;  5CEV A;  1P8S A;  1P8P A;  3LP7 A;  1T4S A;  4DZ4 A;  1RLA A;  3MFW A;  1ZPG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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