4GWDA

Crystal structure of the mn2+2,zn2+-human arginase i-abh complex
Total Genus 113

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
113
sequence length
313
structure length
313
Chain Sequence
SRTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKEQECDVKDYGDLPFADIPNDSPFQIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAITLACFGLAREGNHKPIDY
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (6-12)O1 (13-15)TIV3 (63-66)S3 (93-97)TIV5 (135-138)TIV1 (16-19)3H1 (23-26)TIV2 (17-20)EMPTYAH1 (27-34)AH2 (36-42)AH10 (286-304)S2 (45-52)TII'1 (64-67)TIV4 (67-70)TVIII1 (58-61)AH3 (70-90)TII2 (159-162)AH4 (102-114)S8 (270-276)AH9 (254-267)TIV8 (220-223)TI1 (115-118)S4 (119-123)TIV7 (179-182)TVIII2 (124-127)S5 (174-179)TI2 (131-134)TI3 (132-135)3H2 (140-142)AH5 (143-148)3H3 (150-152)TII1 (152-155)AH6 (184-193)TI5 (170-173)S6 (196-199)TIV10 (241-244)AH7 (200-206)AH8 (208-220)S7 (227-232)TI7 (237-240)TIV9 (239-242)TIV12 (248-251)3H4 (233-235)TIV11 (244-247)3H5 (280-282)TI9 (307-310)O2 (313-315)TI4 (162-165)TIV13 (283-286)Updating...
connected with : NaN
molecule tags Hydrolase/hydrolase inhibitor
source organism Homo sapiens
publication title Structure and function of non-native metal clusters in human arginase I.
pubmed doi rcsb
molecule keywords Arginase-1
total genus 113
structure length 313
sequence length 313
chains with identical sequence B
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2012-09-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 4gwdA00
1T5GA 4I06A 4FCIA 4MYFA 1CEVA 4HXQA 3MFVA 1P8SA 1TBJA 3KV2A 4Q41A 4Q3VA 4GSVA 3NIQA 3SL1A 1T5FA 5RLAA 1WOGA 4HZEA 2RLAA 4IE2A 2AEBA 1WOIA 4Q3RA 4Q3UA 3SL0A 3LP7A 3E8ZA 3NIOA 3SKKA 1XFKA 1ZPEA 2PHAA 4GWCA 1GQ7A 3M1RA 4IXVA 4Q3SA 4FCKA 1PQ3A 1TBHA 1T4RA 1P8RA 4MXRA 4IU0A 2A0MA 4IU1A 2EIVA 5HJAA 4MYLA 1HQXA 1WOHA 4RHIA 4GSZA 4MYNA 3MMRA 3E6VA 1HQ5A 3THHA 4HWWA 3MJLA 4Q3TA 4IXUA 1T4SA 4IU5A 1P8OA 3GN0A 4DZ4A 1D3VA 3F80A 4GWDA 1HQGA 4RHMA 2PLLA 3THEA 4G3HA 4IE3A 3RLAA 3MFWA 3TH7A 1RLAA 4RHLA 1GQ6A 4Q42A 3NIPA 4Q40A 3TF3A 1P8PA 3GMZA 3E9BA 3LP4A 4ITYA 3CEVA 3THJA 2CEVA 2PHOA 4MYKA 3E8QA 4GSMA 4IU4A 4Q3PA 1WVAA 1HQFA 3E6KA 4RLAA 4IE1A 5CEVA 2EF5A 1P8MA 3SJTA 1T4PA 1P8NA 1TA1A 1R1OA 1T4TA 2ZAVA 1P8QA 1TBLA 4Q3QA 4RHJA 1ZPGA 3LHLA 2EF4A 4Q3RC 1WVBA 1HQHA 4RHQA 3PZLA 4RHKA 3DJ8A 4CEVA 5HJ9A
chains in the Genus database with same CATH superfamily
4BZ7A 1T5GA 4QA3A 4QA1A 4I06A 5D1DA 5G1CA 4FCIA 5D1BA 1T64A 1ZZ3A 4MYFA 5G1BA 5G13A 1CEVA 3Q9FA 4HXQA 3MFVA 1P8SA 1TBJA 3KV2A 4Q41A 4RN0A 4Q3VA 4GSVA 3NIQA 4ZUMA 3SL1A 1T5FA 5RLAA 1WOGA 4LY1A 5EFBD 4HZEA 4RN1A 2RLAA 4IE2A 2V5WA 5EEFA 4QA5A 3RQDA 2VQJA 5EF8A 2AEBA 1WOIA 4Q3RA 4Q3UA 3SL0A 3LP7A 3E8ZA 3NIOA 5DC5A 3SKKA 1XFKA 1ZPEA 2PHAA 5G0HA 5IWGA 1T67A 4GWCA 1GQ7A 4QA6A 3M1RA 4IXVA 4Q3SA 4BKXB 4FCKA 1PQ3A 3MZ4A 1TBHA 1T4RA 1P8RA 5EEIA 4BZ5A 4MXRA 4IU0A 5EFNA 2A0MA 2VCGA 2EIVA 3MZ6A 4IU1A 4MYLA 5THUA 1HQXA 5HJAA 4QA4A 4ZUPA 1WOHA 5EF7A 5EEMA 5THTA 4CQFA 4RHIA 3EZPA 5G0IA 4GSZA 4MYNA 4CBYA 3MMRA 3E6VA 3C10A 1HQ5A 3THHA 4HWWA 3MJLA 4Q3TA 4IXUA 1T4SA 1ZZ0A 5EFGA 4BZ6A 5G11A 4IU5A 5EFHA 1P8OA 4ZUQA 3GN0A 4DZ4A 5JI5A 1D3VA 3F80A 4GWDA 5D1CA 5FUEA 1HQGA 5THSA 3Q9EA 5G0GA 4RHMA 2PLLA 3ZNRA 3THEA 4G3HA 5EEKA 4IE3A 3RLAA 3MFWA 5G3WA 3TH7A 1RLAA 1C3SA 3EZTA 4RHLA 4CBTA 1GQ6A 4Q42A 5G1AA 5EENA 3Q9CA 5LI3A 3F06A 3NIPA 4Q40A 2VQWG 1C3PA 3TF3A 3MAXA 2VQVA 1P8PA 3GMZA 3MENA 5G0XA 3ZNSA 2VQQA 3E9BA 3LP4A 4ITYA 5EFKB 3F0RA 3C0ZA 3CEVA 5DC8A 3THJA 1ZZ1A 5DC6A 2V5XA 4QA0A 5EFJD 4ZUNA 4A69A 1W22A 2CEVA 5THVA 2PHOA 3MZ3A 4MYKA 5G0JA 5G10A 3E8QA 1T69A 1C3RA 3C0YA 4GSMA 4IU4A 4Q3PA 4ZUOA 1WVAA 2VQOA 1HQFA 3E6KA 4QA7A 4RLAA 4IE1A 5CEVA 2EF5A 1P8MA 4QA2A 5IX0A 4LXZA 3SJTA 1T4PA 5A2SA 5ICNB 1P8NA 1TA1A 3EW8A 3EWFA 5G0YA 1R1OA 3Q9BA 1T4TA 2ZAVA 1P8QA 1TBLA 4Q3QA 5G12A 2GH6A 5G17A 5BWZA 1VKGA 2VQMA 4BZ9A 4RHJA 4BZ8A 1ZPGA 5DC7A 3LHLA 2EF4A 3MZ7A 4Q3RC 1WVBA 1HQHA 4RHQA 3PZLA 3F07A 4RHKA 3SFFA 3DJ8A 4RN2A 4ZURA 4CEVA 5HJ9A 5FCWA 3SFHA
chains in the Genus database with same CATH topology
1T5GA 4I06A 4FCIA 4MYFA 1CEVA 4HXQA 3MFVA 1P8SA 1TBJA 3KV2A 4Q41A 4Q3VA 4GSVA 3NIQA 3SL1A 1T5FA 5RLAA 1WOGA 4HZEA 2RLAA 4IE2A 2AEBA 1WOIA 4Q3RA 4Q3UA 3SL0A 3LP7A 3E8ZA 3NIOA 3SKKA 1XFKA 1ZPEA 2PHAA 4GWCA 1GQ7A 3M1RA 4IXVA 4Q3SA 4FCKA 1PQ3A 1TBHA 1T4RA 1P8RA 4MXRA 4IU0A 2A0MA 4IU1A 2EIVA 5HJAA 4MYLA 1HQXA 1WOHA 4RHIA 4GSZA 4MYNA 3MMRA 3E6VA 1HQ5A 3THHA 4HWWA 3MJLA 4Q3TA 4IXUA 1T4SA 4IU5A 1P8OA 3GN0A 4DZ4A 1D3VA 3F80A 4GWDA 1HQGA 4RHMA 2PLLA 3THEA 4G3HA 4IE3A 3RLAA 3MFWA 3TH7A 1RLAA 4RHLA 1GQ6A 4Q42A 3NIPA 4Q40A 3TF3A 1P8PA 3GMZA 3E9BA 3LP4A 4ITYA 3CEVA 3THJA 2CEVA 2PHOA 4MYKA 3E8QA 4GSMA 4IU4A 4Q3PA 1WVAA 1HQFA 3E6KA 4RLAA 4IE1A 5CEVA 2EF5A 1P8MA 3SJTA 1T4PA 1P8NA 1TA1A 1R1OA 1T4TA 2ZAVA 1P8QA 1TBLA 4Q3QA 4RHJA 1ZPGA 3LHLA 2EF4A 4Q3RC 1WVBA 1HQHA 4RHQA 3PZLA 4RHKA 3DJ8A 4CEVA 5HJ9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T5G A;  4I06 A;  4FCI A;  4MYF A;  1CEV A;  4HXQ A;  3MFV A;  1P8S A;  1TBJ A;  3KV2 A;  4Q41 A;  4Q3V A;  4GSV A;  3NIQ A;  3SL1 A;  1T5F A;  5RLA A;  1WOG A;  4HZE A;  2RLA A;  4IE2 A;  2AEB A;  1WOI A;  4Q3R A;  4Q3U A;  3SL0 A;  3LP7 A;  3E8Z A;  3NIO A;  3SKK A;  1XFK A;  1ZPE A;  2PHA A;  4GWC A;  1GQ7 A;  3M1R A;  4IXV A;  4Q3S A;  4FCK A;  1PQ3 A;  1TBH A;  1T4R A;  1P8R A;  4MXR A;  4IU0 A;  2A0M A;  4IU1 A;  2EIV A;  5HJA A;  4MYL A;  1HQX A;  1WOH A;  4RHI A;  4GSZ A;  4MYN A;  3MMR A;  3E6V A;  1HQ5 A;  3THH A;  4HWW A;  3MJL A;  4Q3T A;  4IXU A;  1T4S A;  4IU5 A;  1P8O A;  3GN0 A;  4DZ4 A;  1D3V A;  3F80 A;  4GWD A;  1HQG A;  4RHM A;  2PLL A;  3THE A;  4G3H A;  4IE3 A;  3RLA A;  3MFW A;  3TH7 A;  1RLA A;  4RHL A;  1GQ6 A;  4Q42 A;  3NIP A;  4Q40 A;  3TF3 A;  1P8P A;  3GMZ A;  3E9B A;  3LP4 A;  4ITY A;  3CEV A;  3THJ A;  2CEV A;  2PHO A;  4MYK A;  3E8Q A;  4GSM A;  4IU4 A;  4Q3P A;  1WVA A;  1HQF A;  3E6K A;  4RLA A;  4IE1 A;  5CEV A;  2EF5 A;  1P8M A;  3SJT A;  1T4P A;  1P8N A;  1TA1 A;  1R1O A;  1T4T A;  2ZAV A;  1P8Q A;  1TBL A;  4Q3Q A;  4RHJ A;  1ZPG A;  3LHL A;  2EF4 A;  4Q3R C;  1WVB A;  1HQH A;  4RHQ A;  3PZL A;  4RHK A;  3DJ8 A;  4CEV A;  5HJ9 A; 
#chains in the Genus database with same CATH topology
 4BZ7 A;  1T5G A;  4QA3 A;  4QA1 A;  4I06 A;  5D1D A;  5G1C A;  4FCI A;  5D1B A;  1T64 A;  1ZZ3 A;  4MYF A;  5G1B A;  5G13 A;  1CEV A;  3Q9F A;  4HXQ A;  3MFV A;  1P8S A;  1TBJ A;  3KV2 A;  4Q41 A;  4RN0 A;  4Q3V A;  4GSV A;  3NIQ A;  4ZUM A;  3SL1 A;  1T5F A;  5RLA A;  1WOG A;  4LY1 A;  5EFB D;  4HZE A;  4RN1 A;  2RLA A;  4IE2 A;  2V5W A;  5EEF A;  4QA5 A;  3RQD A;  2VQJ A;  5EF8 A;  2AEB A;  1WOI A;  4Q3R A;  4Q3U A;  3SL0 A;  3LP7 A;  3E8Z A;  3NIO A;  5DC5 A;  3SKK A;  1XFK A;  1ZPE A;  2PHA A;  5G0H A;  5IWG A;  1T67 A;  4GWC A;  1GQ7 A;  4QA6 A;  3M1R A;  4IXV A;  4Q3S A;  4BKX B;  4FCK A;  1PQ3 A;  3MZ4 A;  1TBH A;  1T4R A;  1P8R A;  5EEI A;  4BZ5 A;  4MXR A;  4IU0 A;  5EFN A;  2A0M A;  2VCG A;  2EIV A;  3MZ6 A;  4IU1 A;  4MYL A;  5THU A;  1HQX A;  5HJA A;  4QA4 A;  4ZUP A;  1WOH A;  5EF7 A;  5EEM A;  5THT A;  4CQF A;  4RHI A;  3EZP A;  5G0I A;  4GSZ A;  4MYN A;  4CBY A;  3MMR A;  3E6V A;  3C10 A;  1HQ5 A;  3THH A;  4HWW A;  3MJL A;  4Q3T A;  4IXU A;  1T4S A;  1ZZ0 A;  5EFG A;  4BZ6 A;  5G11 A;  4IU5 A;  5EFH A;  1P8O A;  4ZUQ A;  3GN0 A;  4DZ4 A;  5JI5 A;  1D3V A;  3F80 A;  4GWD A;  5D1C A;  5FUE A;  1HQG A;  5THS A;  3Q9E A;  5G0G A;  4RHM A;  2PLL A;  3ZNR A;  3THE A;  4G3H A;  5EEK A;  4IE3 A;  3RLA A;  3MFW A;  5G3W A;  3TH7 A;  1RLA A;  1C3S A;  3EZT A;  4RHL A;  4CBT A;  1GQ6 A;  4Q42 A;  5G1A A;  5EEN A;  3Q9C A;  5LI3 A;  3F06 A;  3NIP A;  4Q40 A;  2VQW G;  1C3P A;  3TF3 A;  3MAX A;  2VQV A;  1P8P A;  3GMZ A;  3MEN A;  5G0X A;  3ZNS A;  2VQQ A;  3E9B A;  3LP4 A;  4ITY A;  5EFK B;  3F0R A;  3C0Z A;  3CEV A;  5DC8 A;  3THJ A;  1ZZ1 A;  5DC6 A;  2V5X A;  4QA0 A;  5EFJ D;  4ZUN A;  4A69 A;  1W22 A;  2CEV A;  5THV A;  2PHO A;  3MZ3 A;  4MYK A;  5G0J A;  5G10 A;  3E8Q A;  1T69 A;  1C3R A;  3C0Y A;  4GSM A;  4IU4 A;  4Q3P A;  4ZUO A;  1WVA A;  2VQO A;  1HQF A;  3E6K A;  4QA7 A;  4RLA A;  4IE1 A;  5CEV A;  2EF5 A;  1P8M A;  4QA2 A;  5IX0 A;  4LXZ A;  3SJT A;  1T4P A;  5A2S A;  5ICN B;  1P8N A;  1TA1 A;  3EW8 A;  3EWF A;  5G0Y A;  1R1O A;  3Q9B A;  1T4T A;  2ZAV A;  1P8Q A;  1TBL A;  4Q3Q A;  5G12 A;  2GH6 A;  5G17 A;  5BWZ A;  1VKG A;  2VQM A;  4BZ9 A;  4RHJ A;  4BZ8 A;  1ZPG A;  5DC7 A;  3LHL A;  2EF4 A;  3MZ7 A;  4Q3R C;  1WVB A;  1HQH A;  4RHQ A;  3PZL A;  3F07 A;  4RHK A;  3SFF A;  3DJ8 A;  4RN2 A;  4ZUR A;  4CEV A;  5HJ9 A;  5FCW A;  3SFH A; 
#chains in the Genus database with same CATH homology
 1T5G A;  4I06 A;  4FCI A;  4MYF A;  1CEV A;  4HXQ A;  3MFV A;  1P8S A;  1TBJ A;  3KV2 A;  4Q41 A;  4Q3V A;  4GSV A;  3NIQ A;  3SL1 A;  1T5F A;  5RLA A;  1WOG A;  4HZE A;  2RLA A;  4IE2 A;  2AEB A;  1WOI A;  4Q3R A;  4Q3U A;  3SL0 A;  3LP7 A;  3E8Z A;  3NIO A;  3SKK A;  1XFK A;  1ZPE A;  2PHA A;  4GWC A;  1GQ7 A;  3M1R A;  4IXV A;  4Q3S A;  4FCK A;  1PQ3 A;  1TBH A;  1T4R A;  1P8R A;  4MXR A;  4IU0 A;  2A0M A;  4IU1 A;  2EIV A;  5HJA A;  4MYL A;  1HQX A;  1WOH A;  4RHI A;  4GSZ A;  4MYN A;  3MMR A;  3E6V A;  1HQ5 A;  3THH A;  4HWW A;  3MJL A;  4Q3T A;  4IXU A;  1T4S A;  4IU5 A;  1P8O A;  3GN0 A;  4DZ4 A;  1D3V A;  3F80 A;  4GWD A;  1HQG A;  4RHM A;  2PLL A;  3THE A;  4G3H A;  4IE3 A;  3RLA A;  3MFW A;  3TH7 A;  1RLA A;  4RHL A;  1GQ6 A;  4Q42 A;  3NIP A;  4Q40 A;  3TF3 A;  1P8P A;  3GMZ A;  3E9B A;  3LP4 A;  4ITY A;  3CEV A;  3THJ A;  2CEV A;  2PHO A;  4MYK A;  3E8Q A;  4GSM A;  4IU4 A;  4Q3P A;  1WVA A;  1HQF A;  3E6K A;  4RLA A;  4IE1 A;  5CEV A;  2EF5 A;  1P8M A;  3SJT A;  1T4P A;  1P8N A;  1TA1 A;  1R1O A;  1T4T A;  2ZAV A;  1P8Q A;  1TBL A;  4Q3Q A;  4RHJ A;  1ZPG A;  3LHL A;  2EF4 A;  4Q3R C;  1WVB A;  1HQH A;  4RHQ A;  3PZL A;  4RHK A;  3DJ8 A;  4CEV A;  5HJ9 A; 
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