4MXR | Genus

Total Genus 118

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	118
sequence length	297
structure length	297
Chain Sequence	DDPRLLSLFSAQREEDADIVIIGFPYDEGCVRNGGRAGAKKGPAAFRFFLQRLGSVNNLELNVDASHLKLYDAGDITASTLEEAHEKLESKVFTVLARGAFPFVIGGGNDQSAPNGRAMLRAFPGDVGVINVDSHLDVRPPLSDGRVHSGTPFRQLLEESSFSGKRFVEFACQGSQCGALHAQYVRDHQGHLMWLSEVRKKGAVAALEDAFGLTGKNTFFSFDVDSLKSSDMPGVSCPAAVGLSAQEAFDMCFLAGKTPTVMMMDMSELNPLVEEYRSPRVAVYMFYHFVLGFATRP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Trypanosoma cruzi
publication title	Formiminoglutamase from trypanosoma cruzi is an arginase-like manganese metalloenzyme. pubmed doi rcsb
molecule keywords	Formiminoglutamase
total genus	118
structure length	297
sequence length	297
chains with identical sequence	B
ec nomenclature	ec 3.5.3.8: Formimidoylglutamase.
pdb deposition date	2013-09-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00491	Arginase	Arginase family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.800.10	Alpha Beta	3-Layer(aba) Sandwich	Arginase; Chain A	Ureohydrolase domain	4mxrA00

1GQ6A 1WOHA 4Q3SA 2EIVA 1T4RA 3RLAA 3NIOA 3PZLA 3SKKA 1TBJA 1XFKA 4FCKA 3E8QA 4GWDA 1WOIA 1P8PA 4GSZA 3E6VA 1CEVA 1TA1A 5CEVA 1P8NA 1R1OA 4IU4A 4Q42A 3LP4A 1T4TA 1TBHA 1D3VA 4IE2A 1WVAA 2PLLA 4Q3UA 2EF4A 2PHAA 3NIQA 1ZPEA 4Q3QA 1HQ5A 3E8ZA 1T4PA 2CEVA 4IXVA 4GWCA 4HZEA 3LHLA 1GQ7A 2A0MA 3THJA 3DJ8A 4ITYA 4IE3A 3GMZA 4RHLA 3MMRA 4IU0A 4RHJA 1PQ3A 1HQFA 4HWWA 4MXRA 3MFVA 1ZPGA 4RHKA 2RLAA 2AEBA 4Q3TA 1HQGA 4MYFA 1TBLA 3MFWA 4RHQA 3GN0A 3F80A 4G3HA 3TH7A 4IE1A 3CEVA 4RLAA 3SL1A 1P8QA 4MYNA 1HQXA 3SJTA 3TF3A 1P8SA 1HQHA 2PHOA 3NIPA 4IXUA 4IU5A 3THHA 5HJ9A 5HJAA 3KV2A 1P8RA 4Q3RC 4MYKA 1P8MA 3LP7A 1T5FA 4RHIA 3MJLA 3E6KA 4Q3VA 2ZAVA 4Q3PA 1WVBA 4I06A 3THEA 4RHMA 1RLAA 1WOGA 1P8OA 4GSVA 3E9BA 4IU1A 1T4SA 4FCIA 2EF5A 4Q41A 4GSMA 4MYLA 4DZ4A 4CEVA 4HXQA 5RLAA 3SL0A 4Q3RA 1T5GA 3M1RA 4Q40A
chains in the Genus database with same CATH superfamily

1ZZ0A 1GQ6A 1WOHA 1ZZ1A 3Q9BA 5EEFA 4Q3SA 2EIVA 5A2SA 1T4RA 3RLAA 4CBYA 3NIOA 3PZLA 4RN2A 3SKKA 1TBJA 2V5WA 2VQQA 1XFKA 5G0YA 4CBTA 4ZUMA 4FCKA 3E8QA 4GWDA 1WOIA 4QA4A 1P8PA 4GSZA 5D1CA 3E6VA 1CEVA 2VCGA 5LI3A 1TA1A 5CEVA 1P8NA 4QA1A 5FUEA 1R1OA 4IU4A 4Q42A 4QA2A 4BZ5A 3LP4A 3RQDA 4ZUOA 3MZ3A 5EFHA 5EFKB 1T4TA 1TBHA 1D3VA 3F06A 3EZPA 4IE2A 1WVAA 3MZ6A 4QA3A 2PLLA 3MZ7A 3C10A 4Q3UA 4RN0A 2EF4A 5G1AA 4BZ6A 2PHAA 3NIQA 5BWZA 5EFBD 1T64A 1ZPEA 4Q3QA 5THVA 4QA7A 5EFGA 4ZURA 4BZ9A 1HQ5A 3E8ZA 4BZ8A 1T4PA 2CEVA 4IXVA 4GWCA 4HZEA 5EFNA 3LHLA 1GQ7A 2A0MA 5FCWA 5G12A 4RN1A 3THJA 3DJ8A 3F0RA 3SFFA 4BKXB 4ITYA 4IE3A 3GMZA 4RHLA 3MMRA 5DC8A 1ZZ3A 5IX0A 4IU0A 1VKGA 3EWFA 4RHJA 5G0JA 1HQFA 1PQ3A 4HWWA 5DC5A 4MXRA 3EW8A 2VQWG 5G11A 3MFVA 1ZPGA 4RHKA 5EF7A 2RLAA 4QA6A 2AEBA 4Q3TA 2VQJA 1C3SA 5G0GA 1C3RA 1HQGA 5G1BA 1W22A 3C0ZA 4MYFA 3Q9CA 1TBLA 3C0YA 3M1RA 3MFWA 4QA0A 5DC6A 5EF8A 4ZUPA 4RHQA 4LXZA 4ZUQA 3GN0A 5G3WA 3F80A 4G3HA 5G17A 4IE1A 3TH7A 3Q9FA 3CEVA 4RLAA 3SL1A 1P8QA 4MYNA 1HQXA 3SJTA 5D1DA 3TF3A 5DC7A 3ZNSA 5G13A 4CQFA 4A69A 5G1CA 1P8SA 5THTA 3MENA 5ICNB 3MAXA 2GH6A 5EEMA 1C3PA 1HQHA 1T67A 2PHOA 3NIPA 4IXUA 4IU5A 5G0IA 3THHA 5HJ9A 3SFHA 5HJAA 3KV2A 1P8RA 4Q3RC 3ZNRA 4MYKA 1P8MA 5IWGA 3LP7A 1T5FA 5D1BA 4RHIA 3MJLA 3E6KA 5EFJD 5G0XA 1T69A 4Q3VA 5JI5A 3MZ4A 2ZAVA 4Q3PA 5G10A 1WVBA 2VQMA 3EZTA 4I06A 5THSA 3THEA 4RHMA 1RLAA 4BZ7A 1WOGA 1P8OA 4GSVA 3E9BA 4IU1A 5EEIA 1T4SA 4FCIA 2EF5A 2VQVA 3Q9EA 4GSMA 4LY1A 4ZUNA 4Q41A 5G0HA 5THUA 4MYLA 4DZ4A 4CEVA 2VQOA 4HXQA 5RLAA 3SL0A 4Q3RA 5EENA 1T5GA 5EEKA 2V5XA 3F07A 4Q40A 4QA5A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1GQ6 A;  1WOH A;  4Q3S A;  2EIV A;  1T4R A;  3RLA A;  3NIO A;  3PZL A;  3SKK A;  1TBJ A;  1XFK A;  4FCK A;  3E8Q A;  4GWD A;  1WOI A;  1P8P A;  4GSZ A;  3E6V A;  1CEV A;  1TA1 A;  5CEV A;  1P8N A;  1R1O A;  4IU4 A;  4Q42 A;  3LP4 A;  1T4T A;  1TBH A;  1D3V A;  4IE2 A;  1WVA A;  2PLL A;  4Q3U A;  2EF4 A;  2PHA A;  3NIQ A;  1ZPE A;  4Q3Q A;  1HQ5 A;  3E8Z A;  1T4P A;  2CEV A;  4IXV A;  4GWC A;  4HZE A;  3LHL A;  1GQ7 A;  2A0M A;  3THJ A;  3DJ8 A;  4ITY A;  4IE3 A;  3GMZ A;  4RHL A;  3MMR A;  4IU0 A;  4RHJ A;  1PQ3 A;  1HQF A;  4HWW A;  4MXR A;  3MFV A;  1ZPG A;  4RHK A;  2RLA A;  2AEB A;  4Q3T A;  1HQG A;  4MYF A;  1TBL A;  3MFW A;  4RHQ A;  3GN0 A;  3F80 A;  4G3H A;  3TH7 A;  4IE1 A;  3CEV A;  4RLA A;  3SL1 A;  1P8Q A;  4MYN A;  1HQX A;  3SJT A;  3TF3 A;  1P8S A;  1HQH A;  2PHO A;  3NIP A;  4IXU A;  4IU5 A;  3THH A;  5HJ9 A;  5HJA A;  3KV2 A;  1P8R A;  4Q3R C;  4MYK A;  1P8M A;  3LP7 A;  1T5F A;  4RHI A;  3MJL A;  3E6K A;  4Q3V A;  2ZAV A;  4Q3P A;  1WVB A;  4I06 A;  3THE A;  4RHM A;  1RLA A;  1WOG A;  1P8O A;  4GSV A;  3E9B A;  4IU1 A;  1T4S A;  4FCI A;  2EF5 A;  4Q41 A;  4GSM A;  4MYL A;  4DZ4 A;  4CEV A;  4HXQ A;  5RLA A;  3SL0 A;  4Q3R A;  1T5G A;  3M1R A;  4Q40 A; 
#chains in the Genus database with same CATH topology
 1ZZ0 A;  1GQ6 A;  1WOH A;  1ZZ1 A;  3Q9B A;  5EEF A;  4Q3S A;  2EIV A;  5A2S A;  1T4R A;  3RLA A;  4CBY A;  3NIO A;  3PZL A;  4RN2 A;  3SKK A;  1TBJ A;  2V5W A;  2VQQ A;  1XFK A;  5G0Y A;  4CBT A;  4ZUM A;  4FCK A;  3E8Q A;  4GWD A;  1WOI A;  4QA4 A;  1P8P A;  4GSZ A;  5D1C A;  3E6V A;  1CEV A;  2VCG A;  5LI3 A;  1TA1 A;  5CEV A;  1P8N A;  4QA1 A;  5FUE A;  1R1O A;  4IU4 A;  4Q42 A;  4QA2 A;  4BZ5 A;  3LP4 A;  3RQD A;  4ZUO A;  3MZ3 A;  5EFH A;  5EFK B;  1T4T A;  1TBH A;  1D3V A;  3F06 A;  3EZP A;  4IE2 A;  1WVA A;  3MZ6 A;  4QA3 A;  2PLL A;  3MZ7 A;  3C10 A;  4Q3U A;  4RN0 A;  2EF4 A;  5G1A A;  4BZ6 A;  2PHA A;  3NIQ A;  5BWZ A;  5EFB D;  1T64 A;  1ZPE A;  4Q3Q A;  5THV A;  4QA7 A;  5EFG A;  4ZUR A;  4BZ9 A;  1HQ5 A;  3E8Z A;  4BZ8 A;  1T4P A;  2CEV A;  4IXV A;  4GWC A;  4HZE A;  5EFN A;  3LHL A;  1GQ7 A;  2A0M A;  5FCW A;  5G12 A;  4RN1 A;  3THJ A;  3DJ8 A;  3F0R A;  3SFF A;  4BKX B;  4ITY A;  4IE3 A;  3GMZ A;  4RHL A;  3MMR A;  5DC8 A;  1ZZ3 A;  5IX0 A;  4IU0 A;  1VKG A;  3EWF A;  4RHJ A;  5G0J A;  1HQF A;  1PQ3 A;  4HWW A;  5DC5 A;  4MXR A;  3EW8 A;  2VQW G;  5G11 A;  3MFV A;  1ZPG A;  4RHK A;  5EF7 A;  2RLA A;  4QA6 A;  2AEB A;  4Q3T A;  2VQJ A;  1C3S A;  5G0G A;  1C3R A;  1HQG A;  5G1B A;  1W22 A;  3C0Z A;  4MYF A;  3Q9C A;  1TBL A;  3C0Y A;  3M1R A;  3MFW A;  4QA0 A;  5DC6 A;  5EF8 A;  4ZUP A;  4RHQ A;  4LXZ A;  4ZUQ A;  3GN0 A;  5G3W A;  3F80 A;  4G3H A;  5G17 A;  4IE1 A;  3TH7 A;  3Q9F A;  3CEV A;  4RLA A;  3SL1 A;  1P8Q A;  4MYN A;  1HQX A;  3SJT A;  5D1D A;  3TF3 A;  5DC7 A;  3ZNS A;  5G13 A;  4CQF A;  4A69 A;  5G1C A;  1P8S A;  5THT A;  3MEN A;  5ICN B;  3MAX A;  2GH6 A;  5EEM A;  1C3P A;  1HQH A;  1T67 A;  2PHO A;  3NIP A;  4IXU A;  4IU5 A;  5G0I A;  3THH A;  5HJ9 A;  3SFH A;  5HJA A;  3KV2 A;  1P8R A;  4Q3R C;  3ZNR A;  4MYK A;  1P8M A;  5IWG A;  3LP7 A;  1T5F A;  5D1B A;  4RHI A;  3MJL A;  3E6K A;  5EFJ D;  5G0X A;  1T69 A;  4Q3V A;  5JI5 A;  3MZ4 A;  2ZAV A;  4Q3P A;  5G10 A;  1WVB A;  2VQM A;  3EZT A;  4I06 A;  5THS A;  3THE A;  4RHM A;  1RLA A;  4BZ7 A;  1WOG A;  1P8O A;  4GSV A;  3E9B A;  4IU1 A;  5EEI A;  1T4S A;  4FCI A;  2EF5 A;  2VQV A;  3Q9E A;  4GSM A;  4LY1 A;  4ZUN A;  4Q41 A;  5G0H A;  5THU A;  4MYL A;  4DZ4 A;  4CEV A;  2VQO A;  4HXQ A;  5RLA A;  3SL0 A;  4Q3R A;  5EEN A;  1T5G A;  5EEK A;  2V5X A;  3F07 A;  4Q40 A;  4QA5 A; 
#chains in the Genus database with same CATH homology
 1GQ6 A;  1WOH A;  4Q3S A;  2EIV A;  1T4R A;  3RLA A;  3NIO A;  3PZL A;  3SKK A;  1TBJ A;  1XFK A;  4FCK A;  3E8Q A;  4GWD A;  1WOI A;  1P8P A;  4GSZ A;  3E6V A;  1CEV A;  1TA1 A;  5CEV A;  1P8N A;  1R1O A;  4IU4 A;  4Q42 A;  3LP4 A;  1T4T A;  1TBH A;  1D3V A;  4IE2 A;  1WVA A;  2PLL A;  4Q3U A;  2EF4 A;  2PHA A;  3NIQ A;  1ZPE A;  4Q3Q A;  1HQ5 A;  3E8Z A;  1T4P A;  2CEV A;  4IXV A;  4GWC A;  4HZE A;  3LHL A;  1GQ7 A;  2A0M A;  3THJ A;  3DJ8 A;  4ITY A;  4IE3 A;  3GMZ A;  4RHL A;  3MMR A;  4IU0 A;  4RHJ A;  1PQ3 A;  1HQF A;  4HWW A;  4MXR A;  3MFV A;  1ZPG A;  4RHK A;  2RLA A;  2AEB A;  4Q3T A;  1HQG A;  4MYF A;  1TBL A;  3MFW A;  4RHQ A;  3GN0 A;  3F80 A;  4G3H A;  3TH7 A;  4IE1 A;  3CEV A;  4RLA A;  3SL1 A;  1P8Q A;  4MYN A;  1HQX A;  3SJT A;  3TF3 A;  1P8S A;  1HQH A;  2PHO A;  3NIP A;  4IXU A;  4IU5 A;  3THH A;  5HJ9 A;  5HJA A;  3KV2 A;  1P8R A;  4Q3R C;  4MYK A;  1P8M A;  3LP7 A;  1T5F A;  4RHI A;  3MJL A;  3E6K A;  4Q3V A;  2ZAV A;  4Q3P A;  1WVB A;  4I06 A;  3THE A;  4RHM A;  1RLA A;  1WOG A;  1P8O A;  4GSV A;  3E9B A;  4IU1 A;  1T4S A;  4FCI A;  2EF5 A;  4Q41 A;  4GSM A;  4MYL A;  4DZ4 A;  4CEV A;  4HXQ A;  5RLA A;  3SL0 A;  4Q3R A;  1T5G A;  3M1R A;  4Q40 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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4MXRA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations