4RHKA

Crystal structure of t. brucei arginase-like protein in an oxidized form
Total Genus 99

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
313
structure length
311
Chain Sequence
SHMFSKFLMNVKGVTPRGSDWANRLGPVALFGYGAGMPRRAPLLDFFLQSPRDCDHYAELTIHDKGPIECPPVMFMPVLNCGQMLDEAAGTETPTSDEWYLGSLEASTELLEKGYVPVSVGGDGSATLSMVEAYKRLFPSDDIVIVHFSARPSVSDPRSPLRVLLDKGLLKGVVSVGNRQVSSEDRKVRKLHKMFYMDMHAIYSKGLFCIRDIRNDYPVFISIDASVLDPAFAPAVDSPVAGGLSTRDLLHIMNGIRGPKVVGIDVYGYNPDLDVYRKDNVGLTAIALSKIIKEGILKAYSISTHTEEEGM

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (3-10)TVIII2 (83-86)S1 (26-30)TI1 (16-19)EMPTYTI2 (17-20)TIV1 (19-22)S3 (75-83)TII1 (32-35)S4 (116-120)AH4 (125-137)TII2 (86-89)TIV2 (36-39)AH2 (40-47)TI9 (270-273)TIV3 (52-55)AH8 (246-254)S2 (57-61)AH9 (283-300)S9 (261-267)S8 (219-224)AH5 (160-167)S6 (170-178)S5 (143-148)TVIII3 (149-152)TIV8 (236-239)TIV4 (153-156)AH6 (183-192)TI4 (156-159)AH7 (199-205)TIV5 (178-181)S7 (195-198)3H2 (225-227)TI7 (229-232)TI8 (230-233)TIV7 (231-234)O1 (234-236)S10 (276-277)TI10 (271-274)S11 (281-282)AH3 (96-112)TI11 (277-280)3H1 (0-2)TVIII1 (61-64)TI3 (138-141)Updating...
connected with : NaN
publication title Crystal Structure of an Arginase-like Protein from Trypanosoma brucei That Evolved without a Binuclear Manganese Cluster.
pubmed doi rcsb
molecule tags Unknown function
source organism Trypanosoma brucei brucei
molecule keywords Arginase
total genus 99
structure length 311
sequence length 313
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2014-10-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 4rhkA00
3SJTA 4I06A 4IE1A 4ITYA 3M1RA 1RLAA 4Q3QA 4RHQA 1HQHA 3PZLA 1T4SA 1T5GA 1CEVA 4Q3VA 3F80A 3CEVA 3NIQA 2EF5A 3SL0A 4HXQA 4GWCA 1XFKA 3LP4A 4GSVA 1GQ6A 2EF4A 4MYNA 3LHLA 2AEBA 4IXUA 4MYKA 4MXRA 3TF3A 1ZPEA 3E6VA 1HQXA 4RHKA 4IE3A 1GQ7A 1ZPGA 4FCIA 4MYLA 1TBLA 2RLAA 4IU1A 1PQ3A 1R1OA 3E9BA 1WVAA 1P8SA 1P8PA 3KV2A 4HZEA 4GWDA 3MJLA 3RLAA 4Q40A 3E8ZA 1TBHA 1TBJA 5HJAA 5HJ9A 4Q3SA 3TH7A 3DJ8A 4Q3RA 4Q41A 3GN0A 4IU0A 3MMRA 3E8QA 1WOHA 4Q3RC 4IU5A 5RLAA 3GMZA 3NIPA 1HQGA 4CEVA 1T4TA 4GSZA 4Q42A 4Q3PA 3MFVA 1P8NA 3LP7A 1P8MA 3E6KA 3THEA 3SKKA 2A0MA 1WVBA 4HWWA 1P8OA 1T4PA 2PHAA 2PHOA 4FCKA 3MFWA 4RHMA 2CEVA 4IE2A 4GSMA 4RHJA 4IXVA 1WOGA 1TA1A 4RHIA 4DZ4A 1HQFA 4Q3UA 2ZAVA 4RHLA 1HQ5A 4RLAA 1P8RA 4MYFA 2EIVA 1T4RA 1D3VA 1WOIA 4G3HA 3NIOA 4IU4A 3SL1A 1T5FA 3THHA 5CEVA 3THJA 4Q3TA 2PLLA 1P8QA
chains in the Genus database with same CATH superfamily
4LXZA 3SJTA 1VKGA 4ZUQA 5G0HA 4I06A 3EZPA 4IE1A 4ZUPA 4QA6A 5G12A 4ITYA 5G17A 3M1RA 1RLAA 4Q3QA 4RHQA 1HQHA 3PZLA 2VQOA 1T4SA 1T5GA 3F0RA 1CEVA 3Q9FA 4Q3VA 4CBYA 3F80A 3CEVA 3NIQA 5THVA 4A69A 3MZ4A 2EF5A 4BKXB 3SL0A 3F06A 4HXQA 4GWCA 1XFKA 3Q9EA 3LP4A 4GSVA 1GQ6A 2EF4A 4MYNA 4QA0A 3F07A 3EWFA 5G0GA 3LHLA 2AEBA 4IXUA 4MYKA 4MXRA 5G0JA 4BZ5A 3TF3A 1ZPEA 5G11A 5G10A 5DC7A 5G3WA 3E6VA 4ZUNA 1HQXA 4RHKA 4QA3A 4IE3A 3ZNRA 2GH6A 1GQ7A 5EEKA 3C0YA 2VQVA 4ZUOA 4BZ9A 1ZPGA 1C3SA 4FCIA 4MYLA 1TBLA 2RLAA 2VCGA 4IU1A 1PQ3A 1R1OA 3E9BA 1WVAA 5G0XA 1P8SA 3MENA 5DC6A 1P8PA 4QA5A 3KV2A 5D1DA 5EFJD 3MZ6A 5EEIA 4HZEA 4GWDA 3EW8A 3MJLA 3MZ3A 4QA1A 5DC5A 4Q40A 3E8ZA 1TBHA 5G0YA 5EF7A 1C3PA 1TBJA 5HJAA 5HJ9A 4Q3SA 5IWGA 3TH7A 3DJ8A 4Q3RA 4Q41A 4CBTA 3GN0A 5EF8A 4IU0A 1ZZ0A 3MMRA 5JI5A 3E8QA 5G1CA 1WOHA 5G1BA 3SFFA 4Q3RC 4IU5A 5RLAA 1T67A 3GMZA 3NIPA 1HQGA 4CEVA 1T4TA 4GSZA 4Q42A 5G1AA 4Q3PA 3MFVA 5EFBD 3SFHA 1P8NA 3RLAA 4BZ7A 3LP7A 1P8MA 3E6KA 5EFNA 3THEA 3SKKA 5BWZA 2A0MA 1WVBA 4RN0A 4BZ6A 2V5XA 4QA4A 5FCWA 4HWWA 1P8OA 1T4PA 1T64A 2PHAA 1ZZ3A 2PHOA 5A2SA 5EENA 3EZTA 4FCKA 5DC8A 1C3RA 3Q9BA 4QA7A 3MFWA 1W22A 4RHMA 4CQFA 5THUA 3ZNSA 3RQDA 4ZURA 2CEVA 3Q9CA 5EEFA 4IE2A 2VQWG 5D1BA 5EFGA 5FUEA 5LI3A 4RN2A 4GSMA 5EEMA 2VQQA 2VQJA 4RHJA 5G13A 5EFKB 4IXVA 1T69A 1WOGA 1TA1A 4RHIA 4DZ4A 1HQFA 2VQMA 4Q3UA 5ICNB 2ZAVA 5EFHA 4RN1A 4RHLA 1HQ5A 3C10A 5G0IA 5IX0A 4RLAA 1P8RA 5THSA 4MYFA 2EIVA 1ZZ1A 1T4RA 1D3VA 1WOIA 4G3HA 3MAXA 3NIOA 4IU4A 3MZ7A 4LY1A 4ZUMA 3C0ZA 3SL1A 4BZ8A 4QA2A 5THTA 1T5FA 3THHA 5CEVA 3THJA 2V5WA 2PLLA 4Q3TA 5D1CA 1P8QA
chains in the Genus database with same CATH topology
3SJTA 4I06A 4IE1A 4ITYA 3M1RA 1RLAA 4Q3QA 4RHQA 1HQHA 3PZLA 1T4SA 1T5GA 1CEVA 4Q3VA 3F80A 3CEVA 3NIQA 2EF5A 3SL0A 4HXQA 4GWCA 1XFKA 3LP4A 4GSVA 1GQ6A 2EF4A 4MYNA 3LHLA 2AEBA 4IXUA 4MYKA 4MXRA 3TF3A 1ZPEA 3E6VA 1HQXA 4RHKA 4IE3A 1GQ7A 1ZPGA 4FCIA 4MYLA 1TBLA 2RLAA 4IU1A 1PQ3A 1R1OA 3E9BA 1WVAA 1P8SA 1P8PA 3KV2A 4HZEA 4GWDA 3MJLA 3RLAA 4Q40A 3E8ZA 1TBHA 1TBJA 5HJAA 5HJ9A 4Q3SA 3TH7A 3DJ8A 4Q3RA 4Q41A 3GN0A 4IU0A 3MMRA 3E8QA 1WOHA 4Q3RC 4IU5A 5RLAA 3GMZA 3NIPA 1HQGA 4CEVA 1T4TA 4GSZA 4Q42A 4Q3PA 3MFVA 1P8NA 3LP7A 1P8MA 3E6KA 3THEA 3SKKA 2A0MA 1WVBA 4HWWA 1P8OA 1T4PA 2PHAA 2PHOA 4FCKA 3MFWA 4RHMA 2CEVA 4IE2A 4GSMA 4RHJA 4IXVA 1WOGA 1TA1A 4RHIA 4DZ4A 1HQFA 4Q3UA 2ZAVA 4RHLA 1HQ5A 4RLAA 1P8RA 4MYFA 2EIVA 1T4RA 1D3VA 1WOIA 4G3HA 3NIOA 4IU4A 3SL1A 1T5FA 3THHA 5CEVA 3THJA 4Q3TA 2PLLA 1P8QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SJT A;  4I06 A;  4IE1 A;  4ITY A;  3M1R A;  1RLA A;  4Q3Q A;  4RHQ A;  1HQH A;  3PZL A;  1T4S A;  1T5G A;  1CEV A;  4Q3V A;  3F80 A;  3CEV A;  3NIQ A;  2EF5 A;  3SL0 A;  4HXQ A;  4GWC A;  1XFK A;  3LP4 A;  4GSV A;  1GQ6 A;  2EF4 A;  4MYN A;  3LHL A;  2AEB A;  4IXU A;  4MYK A;  4MXR A;  3TF3 A;  1ZPE A;  3E6V A;  1HQX A;  4RHK A;  4IE3 A;  1GQ7 A;  1ZPG A;  4FCI A;  4MYL A;  1TBL A;  2RLA A;  4IU1 A;  1PQ3 A;  1R1O A;  3E9B A;  1WVA A;  1P8S A;  1P8P A;  3KV2 A;  4HZE A;  4GWD A;  3MJL A;  3RLA A;  4Q40 A;  3E8Z A;  1TBH A;  1TBJ A;  5HJA A;  5HJ9 A;  4Q3S A;  3TH7 A;  3DJ8 A;  4Q3R A;  4Q41 A;  3GN0 A;  4IU0 A;  3MMR A;  3E8Q A;  1WOH A;  4Q3R C;  4IU5 A;  5RLA A;  3GMZ A;  3NIP A;  1HQG A;  4CEV A;  1T4T A;  4GSZ A;  4Q42 A;  4Q3P A;  3MFV A;  1P8N A;  3LP7 A;  1P8M A;  3E6K A;  3THE A;  3SKK A;  2A0M A;  1WVB A;  4HWW A;  1P8O A;  1T4P A;  2PHA A;  2PHO A;  4FCK A;  3MFW A;  4RHM A;  2CEV A;  4IE2 A;  4GSM A;  4RHJ A;  4IXV A;  1WOG A;  1TA1 A;  4RHI A;  4DZ4 A;  1HQF A;  4Q3U A;  2ZAV A;  4RHL A;  1HQ5 A;  4RLA A;  1P8R A;  4MYF A;  2EIV A;  1T4R A;  1D3V A;  1WOI A;  4G3H A;  3NIO A;  4IU4 A;  3SL1 A;  1T5F A;  3THH A;  5CEV A;  3THJ A;  4Q3T A;  2PLL A;  1P8Q A; 
#chains in the Genus database with same CATH topology
 4LXZ A;  3SJT A;  1VKG A;  4ZUQ A;  5G0H A;  4I06 A;  3EZP A;  4IE1 A;  4ZUP A;  4QA6 A;  5G12 A;  4ITY A;  5G17 A;  3M1R A;  1RLA A;  4Q3Q A;  4RHQ A;  1HQH A;  3PZL A;  2VQO A;  1T4S A;  1T5G A;  3F0R A;  1CEV A;  3Q9F A;  4Q3V A;  4CBY A;  3F80 A;  3CEV A;  3NIQ A;  5THV A;  4A69 A;  3MZ4 A;  2EF5 A;  4BKX B;  3SL0 A;  3F06 A;  4HXQ A;  4GWC A;  1XFK A;  3Q9E A;  3LP4 A;  4GSV A;  1GQ6 A;  2EF4 A;  4MYN A;  4QA0 A;  3F07 A;  3EWF A;  5G0G A;  3LHL A;  2AEB A;  4IXU A;  4MYK A;  4MXR A;  5G0J A;  4BZ5 A;  3TF3 A;  1ZPE A;  5G11 A;  5G10 A;  5DC7 A;  5G3W A;  3E6V A;  4ZUN A;  1HQX A;  4RHK A;  4QA3 A;  4IE3 A;  3ZNR A;  2GH6 A;  1GQ7 A;  5EEK A;  3C0Y A;  2VQV A;  4ZUO A;  4BZ9 A;  1ZPG A;  1C3S A;  4FCI A;  4MYL A;  1TBL A;  2RLA A;  2VCG A;  4IU1 A;  1PQ3 A;  1R1O A;  3E9B A;  1WVA A;  5G0X A;  1P8S A;  3MEN A;  5DC6 A;  1P8P A;  4QA5 A;  3KV2 A;  5D1D A;  5EFJ D;  3MZ6 A;  5EEI A;  4HZE A;  4GWD A;  3EW8 A;  3MJL A;  3MZ3 A;  4QA1 A;  5DC5 A;  4Q40 A;  3E8Z A;  1TBH A;  5G0Y A;  5EF7 A;  1C3P A;  1TBJ A;  5HJA A;  5HJ9 A;  4Q3S A;  5IWG A;  3TH7 A;  3DJ8 A;  4Q3R A;  4Q41 A;  4CBT A;  3GN0 A;  5EF8 A;  4IU0 A;  1ZZ0 A;  3MMR A;  5JI5 A;  3E8Q A;  5G1C A;  1WOH A;  5G1B A;  3SFF A;  4Q3R C;  4IU5 A;  5RLA A;  1T67 A;  3GMZ A;  3NIP A;  1HQG A;  4CEV A;  1T4T A;  4GSZ A;  4Q42 A;  5G1A A;  4Q3P A;  3MFV A;  5EFB D;  3SFH A;  1P8N A;  3RLA A;  4BZ7 A;  3LP7 A;  1P8M A;  3E6K A;  5EFN A;  3THE A;  3SKK A;  5BWZ A;  2A0M A;  1WVB A;  4RN0 A;  4BZ6 A;  2V5X A;  4QA4 A;  5FCW A;  4HWW A;  1P8O A;  1T4P A;  1T64 A;  2PHA A;  1ZZ3 A;  2PHO A;  5A2S A;  5EEN A;  3EZT A;  4FCK A;  5DC8 A;  1C3R A;  3Q9B A;  4QA7 A;  3MFW A;  1W22 A;  4RHM A;  4CQF A;  5THU A;  3ZNS A;  3RQD A;  4ZUR A;  2CEV A;  3Q9C A;  5EEF A;  4IE2 A;  2VQW G;  5D1B A;  5EFG A;  5FUE A;  5LI3 A;  4RN2 A;  4GSM A;  5EEM A;  2VQQ A;  2VQJ A;  4RHJ A;  5G13 A;  5EFK B;  4IXV A;  1T69 A;  1WOG A;  1TA1 A;  4RHI A;  4DZ4 A;  1HQF A;  2VQM A;  4Q3U A;  5ICN B;  2ZAV A;  5EFH A;  4RN1 A;  4RHL A;  1HQ5 A;  3C10 A;  5G0I A;  5IX0 A;  4RLA A;  1P8R A;  5THS A;  4MYF A;  2EIV A;  1ZZ1 A;  1T4R A;  1D3V A;  1WOI A;  4G3H A;  3MAX A;  3NIO A;  4IU4 A;  3MZ7 A;  4LY1 A;  4ZUM A;  3C0Z A;  3SL1 A;  4BZ8 A;  4QA2 A;  5THT A;  1T5F A;  3THH A;  5CEV A;  3THJ A;  2V5W A;  2PLL A;  4Q3T A;  5D1C A;  1P8Q A; 
#chains in the Genus database with same CATH homology
 3SJT A;  4I06 A;  4IE1 A;  4ITY A;  3M1R A;  1RLA A;  4Q3Q A;  4RHQ A;  1HQH A;  3PZL A;  1T4S A;  1T5G A;  1CEV A;  4Q3V A;  3F80 A;  3CEV A;  3NIQ A;  2EF5 A;  3SL0 A;  4HXQ A;  4GWC A;  1XFK A;  3LP4 A;  4GSV A;  1GQ6 A;  2EF4 A;  4MYN A;  3LHL A;  2AEB A;  4IXU A;  4MYK A;  4MXR A;  3TF3 A;  1ZPE A;  3E6V A;  1HQX A;  4RHK A;  4IE3 A;  1GQ7 A;  1ZPG A;  4FCI A;  4MYL A;  1TBL A;  2RLA A;  4IU1 A;  1PQ3 A;  1R1O A;  3E9B A;  1WVA A;  1P8S A;  1P8P A;  3KV2 A;  4HZE A;  4GWD A;  3MJL A;  3RLA A;  4Q40 A;  3E8Z A;  1TBH A;  1TBJ A;  5HJA A;  5HJ9 A;  4Q3S A;  3TH7 A;  3DJ8 A;  4Q3R A;  4Q41 A;  3GN0 A;  4IU0 A;  3MMR A;  3E8Q A;  1WOH A;  4Q3R C;  4IU5 A;  5RLA A;  3GMZ A;  3NIP A;  1HQG A;  4CEV A;  1T4T A;  4GSZ A;  4Q42 A;  4Q3P A;  3MFV A;  1P8N A;  3LP7 A;  1P8M A;  3E6K A;  3THE A;  3SKK A;  2A0M A;  1WVB A;  4HWW A;  1P8O A;  1T4P A;  2PHA A;  2PHO A;  4FCK A;  3MFW A;  4RHM A;  2CEV A;  4IE2 A;  4GSM A;  4RHJ A;  4IXV A;  1WOG A;  1TA1 A;  4RHI A;  4DZ4 A;  1HQF A;  4Q3U A;  2ZAV A;  4RHL A;  1HQ5 A;  4RLA A;  1P8R A;  4MYF A;  2EIV A;  1T4R A;  1D3V A;  1WOI A;  4G3H A;  3NIO A;  4IU4 A;  3SL1 A;  1T5F A;  3THH A;  5CEV A;  3THJ A;  4Q3T A;  2PLL A;  1P8Q A; 
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