4ZUNA

Crystal structure of acetylpolyamine amidohydrolase from mycoplana ramosa in complex with a thiol inhibitor
Total Genus 118

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
341
structure length
341
Chain Sequence
MRVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFDDVVAPARHGLETVLKVHDAGYLNFLETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPGHHAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGKGAGAGTTANYPMGRGTPYSVWGEALTDSLKRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLLVVMEGGYGVPEIGLNVANVLKGVAG
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS5 (148-151)S1 (3-4)S4 (48-49)O2 (151-153)3H1 (7-11)TIV4 (153-156)S2 (17-19)TIV2 (26-29)TI'2 (166-169)TI1 (115-118)AH5 (173-184)TIV3 (56-59)3H2 (59-61)O3 (171-173)AH2 (65-81)AH4 (124-144)AH3 (105-112)TII1 (94-97)S10 (315-319)TI2 (157-160)S6 (189-193)TIV5 (161-164)AH6 (200-206)TI3 (206-209)TVIII1 (186-189)AH7 (255-272)TI4 (209-212)TI6 (231-234)S8 (244-249)TII3 (240-243)S7 (212-219)TI5 (220-223)TII4 (250-253)TIV6 (221-224)TVIa1 (224-227)3H3 (238-240)TIV8 (274-277)TI7 (283-286)AH8 (298-310)TI8 (286-289)O5 (323-325)AH9 (326-340)S3 (22-24)AH1 (30-43)TII2 (121-124)TI9 (289-292)O4 (198-200)S9 (276-281)Updating...
connected with : NaN
molecule tags Hydrolase/hydrolase inhibitor
source organism Mycoplana ramosa
publication title Design, Synthesis, and Evaluation of Polyamine Deacetylase Inhibitors, and High-Resolution Crystal Structures of Their Complexes with Acetylpolyamine Amidohydrolase.
pubmed doi rcsb
molecule keywords Acetylpolyamine aminohydrolase
total genus 118
structure length 341
sequence length 341
chains with identical sequence B
ec nomenclature ec 3.5.1.48: Acetylspermidine deacetylase.
pdb deposition date 2015-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 4zunA00
4QA7A 4LXZA 4BZ6A 1T67A 2VQOA 4QA4A 4CBYA 4QA1A 4ZURA 4QA5A 4RN1A 1T69A 2V5XA 4CQFA 1C3RA 5G0GA 4BZ9A 4QA6A 3MZ7A 4RN0A 2VCGA 3SFFA 5LI3A 5EFGA 5DC8A 1T64A 5G0XA 5G11A 5EEMA 5IWGA 5JI5A 1C3PA 4LY1A 1ZZ1A 4BZ7A 3ZNRA 5EFJD 5EENA 4ZUQA 3Q9BA 2VQMA 5G0YA 5FUEA 4RN2A 4QA0A 3F0RA 5G1AA 2GH6A 3F07A 5IX0A 5DC5A 3Q9CA 5A2SA 2VQWG 5EFNA 1ZZ3A 3C0ZA 5THTA 3F06A 1ZZ0A 5G1CA 3Q9EA 4QA3A 5BWZA 3MZ4A 5THUA 5G0HA 5EFHA 5G13A 4ZUMA 5DC6A 5THSA 5G0JA 3ZNSA 5G1BA 4ZUOA 3MENA 5EEFA 5G0IA 2V5WA 4BZ5A 5G10A 5D1BA 5EEIA 3C10A 3RQDA 3EZPA 3EZTA 2VQQA 3C0YA 3EWFA 4A69A 1W22A 3SFHA 3MZ6A 1VKGA 5EFBD 4ZUPA 5EFKB 3Q9FA 5DC7A 5ICNB 5EF8A 5D1CA 5EF7A 4QA2A 4CBTA 4ZUNA 2VQJA 5FCWA 4BZ8A 5THVA 3EW8A 5D1DA 4BKXB 3MAXA 5G17A 3MZ3A 1C3SA 2VQVA 5G12A 5EEKA 5G3WA
chains in the Genus database with same CATH superfamily
1HQGA 3M1RA 3E8ZA 4QA7A 4DZ4A 3THJA 4LXZA 4BZ6A 3F80A 3NIPA 1T67A 2VQOA 3NIQA 4Q3PA 4QA4A 4Q3QA 4CBYA 4QA1A 4ZURA 4IXVA 5RLAA 1D3VA 3SL0A 3E6VA 1HQHA 1P8PA 1TA1A 4Q3VA 1T69A 4QA5A 4RN1A 1ZPGA 4GSZA 1WOHA 2AEBA 2V5XA 4CQFA 3E8QA 1C3RA 5G0GA 4BZ9A 1TBLA 2EF5A 4QA6A 3MZ7A 4RN0A 1T4PA 2VCGA 1WVAA 3SFFA 4IU5A 4ITYA 5LI3A 3LP4A 5DC8A 5EFGA 1WOIA 1T64A 4FCIA 5G0XA 5G11A 1ZPEA 5EEMA 3DJ8A 3PZLA 5IWGA 5JI5A 1C3PA 1P8RA 4LY1A 1ZZ1A 4BZ7A 3ZNRA 4Q41A 4GWDA 4RHMA 3LHLA 4RHIA 5HJAA 1HQFA 5EFJD 5EENA 4ZUQA 3Q9BA 2VQMA 2ZAVA 1T5GA 4Q3UA 5FUEA 5G0YA 3SJTA 2EF4A 4Q3RC 4RN2A 4QA0A 3F0RA 5G1AA 2GH6A 3F07A 4IU0A 5IX0A 5DC5A 3Q9CA 5A2SA 2VQWG 5EFNA 1PQ3A 4RHQA 1ZZ3A 4G3HA 3C0ZA 1T4RA 2CEVA 3MJLA 5THTA 3SKKA 3F06A 4RHKA 4RLAA 4Q3RA 4MYLA 1ZZ0A 5G1CA 1CEVA 3Q9EA 4HXQA 4QA3A 5BWZA 3GMZA 3MZ4A 4IE1A 5G0HA 5EFHA 4Q3SA 5G13A 1P8QA 1HQXA 4ZUMA 5DC6A 3CEVA 1GQ7A 5THSA 4IXUA 5G0JA 3ZNSA 3THHA 4I06A 1HQ5A 1TBHA 4ZUOA 5G1BA 5HJ9A 4CEVA 3MENA 2A0MA 4RHLA 1T5FA 5EEFA 4HZEA 5G0IA 4GSMA 2PLLA 4MXRA 2V5WA 3RLAA 4BZ5A 5G10A 1T4TA 1P8OA 4IE3A 5D1BA 5EEIA 1P8MA 3C10A 3RQDA 3THEA 3EZPA 3EZTA 2VQQA 3C0YA 3EWFA 4A69A 3GN0A 1W22A 4MYFA 3SFHA 4HWWA 1P8SA 3MZ6A 3NIOA 1VKGA 4Q3TA 5EFBD 4ZUPA 3MFWA 5CEVA 2PHAA 5EFKB 4IU4A 3Q9FA 5DC7A 4MYKA 5ICNB 5D1CA 5EF8A 1P8NA 5EF7A 1R1OA 4FCKA 4GWCA 3E6KA 4IE2A 1WOGA 4QA2A 4CBTA 4ZUNA 1XFKA 1RLAA 2VQJA 3E9BA 5THUA 4IU1A 5FCWA 4BZ8A 1TBJA 5THVA 3EW8A 3KV2A 4MYNA 5D1DA 4BKXB 3MAXA 5G17A 2EIVA 4GSVA 1GQ6A 3TH7A 1T4SA 2RLAA 1WVBA 3MFVA 3MZ3A 3MMRA 2PHOA 3LP7A 1C3SA 2VQVA 5G12A 3SL1A 3TF3A 4Q42A 5EEKA 4RHJA 4Q40A 5G3WA
chains in the Genus database with same CATH topology
4QA7A 4LXZA 4BZ6A 1T67A 2VQOA 4QA4A 4CBYA 4QA1A 4ZURA 4QA5A 4RN1A 1T69A 2V5XA 4CQFA 1C3RA 5G0GA 4BZ9A 4QA6A 3MZ7A 4RN0A 2VCGA 3SFFA 5LI3A 5EFGA 5DC8A 1T64A 5G0XA 5G11A 5EEMA 5IWGA 5JI5A 1C3PA 4LY1A 1ZZ1A 4BZ7A 3ZNRA 5EFJD 5EENA 4ZUQA 3Q9BA 2VQMA 5G0YA 5FUEA 4RN2A 4QA0A 3F0RA 5G1AA 2GH6A 3F07A 5IX0A 5DC5A 3Q9CA 5A2SA 2VQWG 5EFNA 1ZZ3A 3C0ZA 5THTA 3F06A 1ZZ0A 5G1CA 3Q9EA 4QA3A 5BWZA 3MZ4A 5THUA 5G0HA 5EFHA 5G13A 4ZUMA 5DC6A 5THSA 5G0JA 3ZNSA 5G1BA 4ZUOA 3MENA 5EEFA 5G0IA 2V5WA 4BZ5A 5G10A 5D1BA 5EEIA 3C10A 3RQDA 3EZPA 3EZTA 2VQQA 3C0YA 3EWFA 4A69A 1W22A 3SFHA 3MZ6A 1VKGA 5EFBD 4ZUPA 5EFKB 3Q9FA 5DC7A 5ICNB 5EF8A 5D1CA 5EF7A 4QA2A 4CBTA 4ZUNA 2VQJA 5FCWA 4BZ8A 5THVA 3EW8A 5D1DA 4BKXB 3MAXA 5G17A 3MZ3A 1C3SA 2VQVA 5G12A 5EEKA 5G3WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QA7 A;  4LXZ A;  4BZ6 A;  1T67 A;  2VQO A;  4QA4 A;  4CBY A;  4QA1 A;  4ZUR A;  4QA5 A;  4RN1 A;  1T69 A;  2V5X A;  4CQF A;  1C3R A;  5G0G A;  4BZ9 A;  4QA6 A;  3MZ7 A;  4RN0 A;  2VCG A;  3SFF A;  5LI3 A;  5EFG A;  5DC8 A;  1T64 A;  5G0X A;  5G11 A;  5EEM A;  5IWG A;  5JI5 A;  1C3P A;  4LY1 A;  1ZZ1 A;  4BZ7 A;  3ZNR A;  5EFJ D;  5EEN A;  4ZUQ A;  3Q9B A;  2VQM A;  5G0Y A;  5FUE A;  4RN2 A;  4QA0 A;  3F0R A;  5G1A A;  2GH6 A;  3F07 A;  5IX0 A;  5DC5 A;  3Q9C A;  5A2S A;  2VQW G;  5EFN A;  1ZZ3 A;  3C0Z A;  5THT A;  3F06 A;  1ZZ0 A;  5G1C A;  3Q9E A;  4QA3 A;  5BWZ A;  3MZ4 A;  5THU A;  5G0H A;  5EFH A;  5G13 A;  4ZUM A;  5DC6 A;  5THS A;  5G0J A;  3ZNS A;  5G1B A;  4ZUO A;  3MEN A;  5EEF A;  5G0I A;  2V5W A;  4BZ5 A;  5G10 A;  5D1B A;  5EEI A;  3C10 A;  3RQD A;  3EZP A;  3EZT A;  2VQQ A;  3C0Y A;  3EWF A;  4A69 A;  1W22 A;  3SFH A;  3MZ6 A;  1VKG A;  5EFB D;  4ZUP A;  5EFK B;  3Q9F A;  5DC7 A;  5ICN B;  5EF8 A;  5D1C A;  5EF7 A;  4QA2 A;  4CBT A;  4ZUN A;  2VQJ A;  5FCW A;  4BZ8 A;  5THV A;  3EW8 A;  5D1D A;  4BKX B;  3MAX A;  5G17 A;  3MZ3 A;  1C3S A;  2VQV A;  5G12 A;  5EEK A;  5G3W A; 
#chains in the Genus database with same CATH topology
 1HQG A;  3M1R A;  3E8Z A;  4QA7 A;  4DZ4 A;  3THJ A;  4LXZ A;  4BZ6 A;  3F80 A;  3NIP A;  1T67 A;  2VQO A;  3NIQ A;  4Q3P A;  4QA4 A;  4Q3Q A;  4CBY A;  4QA1 A;  4ZUR A;  4IXV A;  5RLA A;  1D3V A;  3SL0 A;  3E6V A;  1HQH A;  1P8P A;  1TA1 A;  4Q3V A;  1T69 A;  4QA5 A;  4RN1 A;  1ZPG A;  4GSZ A;  1WOH A;  2AEB A;  2V5X A;  4CQF A;  3E8Q A;  1C3R A;  5G0G A;  4BZ9 A;  1TBL A;  2EF5 A;  4QA6 A;  3MZ7 A;  4RN0 A;  1T4P A;  2VCG A;  1WVA A;  3SFF A;  4IU5 A;  4ITY A;  5LI3 A;  3LP4 A;  5DC8 A;  5EFG A;  1WOI A;  1T64 A;  4FCI A;  5G0X A;  5G11 A;  1ZPE A;  5EEM A;  3DJ8 A;  3PZL A;  5IWG A;  5JI5 A;  1C3P A;  1P8R A;  4LY1 A;  1ZZ1 A;  4BZ7 A;  3ZNR A;  4Q41 A;  4GWD A;  4RHM A;  3LHL A;  4RHI A;  5HJA A;  1HQF A;  5EFJ D;  5EEN A;  4ZUQ A;  3Q9B A;  2VQM A;  2ZAV A;  1T5G A;  4Q3U A;  5FUE A;  5G0Y A;  3SJT A;  2EF4 A;  4Q3R C;  4RN2 A;  4QA0 A;  3F0R A;  5G1A A;  2GH6 A;  3F07 A;  4IU0 A;  5IX0 A;  5DC5 A;  3Q9C A;  5A2S A;  2VQW G;  5EFN A;  1PQ3 A;  4RHQ A;  1ZZ3 A;  4G3H A;  3C0Z A;  1T4R A;  2CEV A;  3MJL A;  5THT A;  3SKK A;  3F06 A;  4RHK A;  4RLA A;  4Q3R A;  4MYL A;  1ZZ0 A;  5G1C A;  1CEV A;  3Q9E A;  4HXQ A;  4QA3 A;  5BWZ A;  3GMZ A;  3MZ4 A;  4IE1 A;  5G0H A;  5EFH A;  4Q3S A;  5G13 A;  1P8Q A;  1HQX A;  4ZUM A;  5DC6 A;  3CEV A;  1GQ7 A;  5THS A;  4IXU A;  5G0J A;  3ZNS A;  3THH A;  4I06 A;  1HQ5 A;  1TBH A;  4ZUO A;  5G1B A;  5HJ9 A;  4CEV A;  3MEN A;  2A0M A;  4RHL A;  1T5F A;  5EEF A;  4HZE A;  5G0I A;  4GSM A;  2PLL A;  4MXR A;  2V5W A;  3RLA A;  4BZ5 A;  5G10 A;  1T4T A;  1P8O A;  4IE3 A;  5D1B A;  5EEI A;  1P8M A;  3C10 A;  3RQD A;  3THE A;  3EZP A;  3EZT A;  2VQQ A;  3C0Y A;  3EWF A;  4A69 A;  3GN0 A;  1W22 A;  4MYF A;  3SFH A;  4HWW A;  1P8S A;  3MZ6 A;  3NIO A;  1VKG A;  4Q3T A;  5EFB D;  4ZUP A;  3MFW A;  5CEV A;  2PHA A;  5EFK B;  4IU4 A;  3Q9F A;  5DC7 A;  4MYK A;  5ICN B;  5D1C A;  5EF8 A;  1P8N A;  5EF7 A;  1R1O A;  4FCK A;  4GWC A;  3E6K A;  4IE2 A;  1WOG A;  4QA2 A;  4CBT A;  4ZUN A;  1XFK A;  1RLA A;  2VQJ A;  3E9B A;  5THU A;  4IU1 A;  5FCW A;  4BZ8 A;  1TBJ A;  5THV A;  3EW8 A;  3KV2 A;  4MYN A;  5D1D A;  4BKX B;  3MAX A;  5G17 A;  2EIV A;  4GSV A;  1GQ6 A;  3TH7 A;  1T4S A;  2RLA A;  1WVB A;  3MFV A;  3MZ3 A;  3MMR A;  2PHO A;  3LP7 A;  1C3S A;  2VQV A;  5G12 A;  3SL1 A;  3TF3 A;  4Q42 A;  5EEK A;  4RHJ A;  4Q40 A;  5G3W A; 
#chains in the Genus database with same CATH homology
 4QA7 A;  4LXZ A;  4BZ6 A;  1T67 A;  2VQO A;  4QA4 A;  4CBY A;  4QA1 A;  4ZUR A;  4QA5 A;  4RN1 A;  1T69 A;  2V5X A;  4CQF A;  1C3R A;  5G0G A;  4BZ9 A;  4QA6 A;  3MZ7 A;  4RN0 A;  2VCG A;  3SFF A;  5LI3 A;  5EFG A;  5DC8 A;  1T64 A;  5G0X A;  5G11 A;  5EEM A;  5IWG A;  5JI5 A;  1C3P A;  4LY1 A;  1ZZ1 A;  4BZ7 A;  3ZNR A;  5EFJ D;  5EEN A;  4ZUQ A;  3Q9B A;  2VQM A;  5G0Y A;  5FUE A;  4RN2 A;  4QA0 A;  3F0R A;  5G1A A;  2GH6 A;  3F07 A;  5IX0 A;  5DC5 A;  3Q9C A;  5A2S A;  2VQW G;  5EFN A;  1ZZ3 A;  3C0Z A;  5THT A;  3F06 A;  1ZZ0 A;  5G1C A;  3Q9E A;  4QA3 A;  5BWZ A;  3MZ4 A;  5THU A;  5G0H A;  5EFH A;  5G13 A;  4ZUM A;  5DC6 A;  5THS A;  5G0J A;  3ZNS A;  5G1B A;  4ZUO A;  3MEN A;  5EEF A;  5G0I A;  2V5W A;  4BZ5 A;  5G10 A;  5D1B A;  5EEI A;  3C10 A;  3RQD A;  3EZP A;  3EZT A;  2VQQ A;  3C0Y A;  3EWF A;  4A69 A;  1W22 A;  3SFH A;  3MZ6 A;  1VKG A;  5EFB D;  4ZUP A;  5EFK B;  3Q9F A;  5DC7 A;  5ICN B;  5EF8 A;  5D1C A;  5EF7 A;  4QA2 A;  4CBT A;  4ZUN A;  2VQJ A;  5FCW A;  4BZ8 A;  5THV A;  3EW8 A;  5D1D A;  4BKX B;  3MAX A;  5G17 A;  3MZ3 A;  1C3S A;  2VQV A;  5G12 A;  5EEK A;  5G3W A; 
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