4Q41A

Crystal structure of schistosoma mansoni arginase in complex with l-lysine
Total Genus 125

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
344
structure length
333
Chain Sequence
KLLYTSANFLGIPTNRGQPKIGTYQGPELIRKSNFFQLVAEDGIQLTDCGDIIPVELNEAEDPQRFGMKWSRSFSLTTLRIAERVEELMKQKSTPLVIVGGDHSMATGTILGHAEAKPDLCVLWIDAHGDINTPLNSASGNMHGMPLSFLVKELQDQIPWLDDFEGIKPCLNASNIAYIGLRDLDAHETHDIRKHGIAYFTMLDVDRMGIEAVIKEALLAVNPRLEKAIHLSFDIDALDPLVAPSTGTAVPGGLTLREGLRICEEVSATGKLSVVELAELNPLLGSQEDVLKTQSSAVHILRACLGHCRSGHLPFKVRNLTDQGIMSRAAHMQ
5010015020025030030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV7 (269-272)AH7 (238-250)TVIII1 (19-22)TIV9 (278-281)S1 (23-28)AH3 (88-108)O1 (29-31)TIV1 (31-34)AH1 (43-49)AH2 (51-59)TIV2 (32-35)3H1 (40-42)TIV3 (33-36)TIV4 (81-84)3H2 (76-78)S2 (62-68)3H3 (162-164)TI'1 (82-85)O2 (272-274)AH6 (230-236)TI1 (145-148)TIV8 (274-277)TI3 (173-176)TI4 (174-177)S3 (124-127)3H5 (180-182)TI7 (182-185)AH4 (132-144)TVIII2 (154-157)S4 (149-153)3H4 (170-172)TI10 (200-203)TI5 (175-178)TI12 (250-253)3H6 (190-192)TI8 (183-186)TI9 (192-195)TVIII3 (193-196)S5 (204-209)S7 (257-262)TIV6 (209-212)AH5 (214-223)S6 (226-229)TI14 (268-271)3H7 (263-265)TI15 (309-312)TI13 (267-270)S8 (300-306)AH8 (284-297)TIV5 (85-88)TI6 (176-179)TI2 (165-168)TIV10 (297-300)AH9 (315-333)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Schistosoma mansoni
publication title Crystal Structure of Schistosoma mansoni Arginase, a Potential Drug Target for the Treatment of Schistosomiasis.
pubmed doi rcsb
molecule keywords Arginase
total genus 125
structure length 333
sequence length 344
chains with identical sequence B, C, D
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2014-04-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 4q41A00
3MJLA 4GWCA 4IU0A 1GQ6A 4Q3QA 4Q3VA 2ZAVA 4GSMA 2CEVA 4Q42A 1XFKA 3E8ZA 4RHQA 1T4TA 2RLAA 3PZLA 3F80A 3GMZA 1ZPEA 1TBJA 1TBHA 3M1RA 4RHJA 4RLAA 1P8SA 1RLAA 1WVAA 4MYKA 2A0MA 3DJ8A 4CEVA 4IU1A 1TBLA 4MXRA 4DZ4A 4RHIA 3LHLA 4GSZA 4IXVA 4IU5A 3THEA 1WOHA 4Q3UA 3TH7A 3CEVA 4Q3SA 2PHAA 4RHKA 1P8QA 3SKKA 1HQFA 3E9BA 1P8OA 3THJA 1T4PA 4FCIA 2EIVA 4HWWA 4Q41A 3MMRA 5HJAA 3E8QA 1D3VA 1P8PA 3RLAA 4IE2A 3TF3A 1WOGA 1R1OA 1HQXA 3SL1A 3THHA 5CEVA 3NIQA 4Q3RA 3NIOA 2EF5A 1CEVA 4MYLA 1P8MA 3SL0A 4Q40A 1TA1A 3SJTA 3GN0A 3E6VA 1ZPGA 4MYNA 1P8NA 1T5FA 4RHLA 3LP7A 1P8RA 1HQGA 4MYFA 4HXQA 4GSVA 3MFVA 1T5GA 3LP4A 3MFWA 1T4RA 4IU4A 3KV2A 4RHMA 4IE3A 2EF4A 4Q3PA 4FCKA 1PQ3A 2AEBA 1WVBA 2PLLA 1HQHA 1HQ5A 3NIPA 2PHOA 1GQ7A 5HJ9A 1T4SA 4IE1A 4Q3RC 4GWDA 3E6KA 1WOIA 4I06A 4G3HA 4HZEA 4IXUA 5RLAA 4Q3TA 4ITYA
chains in the Genus database with same CATH superfamily
3MJLA 4GWCA 1ZZ1A 4IU0A 1GQ6A 4Q3QA 4Q3VA 5EEIA 2ZAVA 3F07A 4QA5A 5EEMA 4GSMA 3C10A 2CEVA 3EZPA 5G1CA 3MZ7A 4Q42A 1XFKA 4QA1A 4QA0A 5G1AA 3EZTA 1C3PA 5ICNB 3Q9FA 3E8ZA 4RHQA 4CBYA 5G17A 1T4TA 2RLAA 3PZLA 5EFJD 3F80A 3C0ZA 5THVA 2GH6A 3GMZA 3SFHA 4BZ9A 5D1CA 5EENA 5BWZA 5D1BA 5IX0A 4BZ5A 5EEKA 4LY1A 1ZPEA 1T67A 3EW8A 1TBJA 1TBHA 5A2SA 3M1RA 4RHJA 4QA7A 4RLAA 4CBTA 5G0IA 5FCWA 5THUA 1P8SA 4BZ7A 4CQFA 1RLAA 1WVAA 4A69A 4MYKA 2A0MA 5DC5A 2VQMA 3DJ8A 3RQDA 4CEVA 4IU1A 1TBLA 4MXRA 5EFBD 4DZ4A 4RHIA 5EFHA 1W22A 5G12A 1C3SA 3LHLA 1C3RA 3MZ6A 2VQOA 4GSZA 3MAXA 4IXVA 4IU5A 3ZNSA 3ZNRA 2VQJA 5DC8A 3THEA 1WOHA 2V5XA 1ZZ0A 4Q3UA 3TH7A 3CEVA 5IWGA 4Q3SA 3Q9BA 2PHAA 4LXZA 5G0HA 5G3WA 5EF7A 3C0YA 3F06A 4RHKA 1P8QA 5EF8A 1HQFA 3SKKA 3E9BA 5G0GA 1P8OA 3MZ3A 3THJA 1T4PA 4FCIA 4BZ6A 4QA4A 4ZUOA 5THTA 2EIVA 4HWWA 2VQWG 4Q41A 5G11A 4QA3A 3MMRA 4RN0A 5EFNA 5G1BA 5HJAA 3Q9EA 3E8QA 1D3VA 1P8PA 4QA2A 3RLAA 4RN2A 4IE2A 5FUEA 3TF3A 1WOGA 3MZ4A 1R1OA 1VKGA 1HQXA 2V5WA 2VCGA 3SL1A 3THHA 5JI5A 5CEVA 3F0RA 4RN1A 3NIQA 4Q3RA 3NIOA 2EF5A 1CEVA 5LI3A 3Q9CA 4MYLA 3EWFA 5G0JA 1P8MA 3SL0A 4Q40A 3SFFA 1TA1A 3MENA 3SJTA 3GN0A 3E6VA 4BKXB 1ZPGA 4MYNA 4BZ8A 5THSA 1P8NA 1T5FA 4RHLA 3LP7A 4ZUQA 1P8RA 1HQGA 4MYFA 4HXQA 4GSVA 3MFVA 5DC6A 2VQQA 1T5GA 3LP4A 3MFWA 1T4RA 4IU4A 3KV2A 5EEFA 4RHMA 4IE3A 2EF4A 4Q3PA 4FCKA 1PQ3A 2VQVA 2AEBA 1WVBA 2PLLA 5G10A 5G13A 5G0XA 1T69A 1HQHA 1HQ5A 3NIPA 5G0YA 4ZUPA 2PHOA 1GQ7A 4QA6A 4ZUNA 1T4SA 5EFKB 5HJ9A 5EFGA 5D1DA 4ZUMA 1T64A 4IE1A 4Q3RC 4GWDA 1ZZ3A 3E6KA 1WOIA 4I06A 4G3HA 4HZEA 4IXUA 5DC7A 5RLAA 4ZURA 4Q3TA 4ITYA
chains in the Genus database with same CATH topology
3MJLA 4GWCA 4IU0A 1GQ6A 4Q3QA 4Q3VA 2ZAVA 4GSMA 2CEVA 4Q42A 1XFKA 3E8ZA 4RHQA 1T4TA 2RLAA 3PZLA 3F80A 3GMZA 1ZPEA 1TBJA 1TBHA 3M1RA 4RHJA 4RLAA 1P8SA 1RLAA 1WVAA 4MYKA 2A0MA 3DJ8A 4CEVA 4IU1A 1TBLA 4MXRA 4DZ4A 4RHIA 3LHLA 4GSZA 4IXVA 4IU5A 3THEA 1WOHA 4Q3UA 3TH7A 3CEVA 4Q3SA 2PHAA 4RHKA 1P8QA 3SKKA 1HQFA 3E9BA 1P8OA 3THJA 1T4PA 4FCIA 2EIVA 4HWWA 4Q41A 3MMRA 5HJAA 3E8QA 1D3VA 1P8PA 3RLAA 4IE2A 3TF3A 1WOGA 1R1OA 1HQXA 3SL1A 3THHA 5CEVA 3NIQA 4Q3RA 3NIOA 2EF5A 1CEVA 4MYLA 1P8MA 3SL0A 4Q40A 1TA1A 3SJTA 3GN0A 3E6VA 1ZPGA 4MYNA 1P8NA 1T5FA 4RHLA 3LP7A 1P8RA 1HQGA 4MYFA 4HXQA 4GSVA 3MFVA 1T5GA 3LP4A 3MFWA 1T4RA 4IU4A 3KV2A 4RHMA 4IE3A 2EF4A 4Q3PA 4FCKA 1PQ3A 2AEBA 1WVBA 2PLLA 1HQHA 1HQ5A 3NIPA 2PHOA 1GQ7A 5HJ9A 1T4SA 4IE1A 4Q3RC 4GWDA 3E6KA 1WOIA 4I06A 4G3HA 4HZEA 4IXUA 5RLAA 4Q3TA 4ITYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MJL A;  4GWC A;  4IU0 A;  1GQ6 A;  4Q3Q A;  4Q3V A;  2ZAV A;  4GSM A;  2CEV A;  4Q42 A;  1XFK A;  3E8Z A;  4RHQ A;  1T4T A;  2RLA A;  3PZL A;  3F80 A;  3GMZ A;  1ZPE A;  1TBJ A;  1TBH A;  3M1R A;  4RHJ A;  4RLA A;  1P8S A;  1RLA A;  1WVA A;  4MYK A;  2A0M A;  3DJ8 A;  4CEV A;  4IU1 A;  1TBL A;  4MXR A;  4DZ4 A;  4RHI A;  3LHL A;  4GSZ A;  4IXV A;  4IU5 A;  3THE A;  1WOH A;  4Q3U A;  3TH7 A;  3CEV A;  4Q3S A;  2PHA A;  4RHK A;  1P8Q A;  3SKK A;  1HQF A;  3E9B A;  1P8O A;  3THJ A;  1T4P A;  4FCI A;  2EIV A;  4HWW A;  4Q41 A;  3MMR A;  5HJA A;  3E8Q A;  1D3V A;  1P8P A;  3RLA A;  4IE2 A;  3TF3 A;  1WOG A;  1R1O A;  1HQX A;  3SL1 A;  3THH A;  5CEV A;  3NIQ A;  4Q3R A;  3NIO A;  2EF5 A;  1CEV A;  4MYL A;  1P8M A;  3SL0 A;  4Q40 A;  1TA1 A;  3SJT A;  3GN0 A;  3E6V A;  1ZPG A;  4MYN A;  1P8N A;  1T5F A;  4RHL A;  3LP7 A;  1P8R A;  1HQG A;  4MYF A;  4HXQ A;  4GSV A;  3MFV A;  1T5G A;  3LP4 A;  3MFW A;  1T4R A;  4IU4 A;  3KV2 A;  4RHM A;  4IE3 A;  2EF4 A;  4Q3P A;  4FCK A;  1PQ3 A;  2AEB A;  1WVB A;  2PLL A;  1HQH A;  1HQ5 A;  3NIP A;  2PHO A;  1GQ7 A;  5HJ9 A;  1T4S A;  4IE1 A;  4Q3R C;  4GWD A;  3E6K A;  1WOI A;  4I06 A;  4G3H A;  4HZE A;  4IXU A;  5RLA A;  4Q3T A;  4ITY A; 
#chains in the Genus database with same CATH topology
 3MJL A;  4GWC A;  1ZZ1 A;  4IU0 A;  1GQ6 A;  4Q3Q A;  4Q3V A;  5EEI A;  2ZAV A;  3F07 A;  4QA5 A;  5EEM A;  4GSM A;  3C10 A;  2CEV A;  3EZP A;  5G1C A;  3MZ7 A;  4Q42 A;  1XFK A;  4QA1 A;  4QA0 A;  5G1A A;  3EZT A;  1C3P A;  5ICN B;  3Q9F A;  3E8Z A;  4RHQ A;  4CBY A;  5G17 A;  1T4T A;  2RLA A;  3PZL A;  5EFJ D;  3F80 A;  3C0Z A;  5THV A;  2GH6 A;  3GMZ A;  3SFH A;  4BZ9 A;  5D1C A;  5EEN A;  5BWZ A;  5D1B A;  5IX0 A;  4BZ5 A;  5EEK A;  4LY1 A;  1ZPE A;  1T67 A;  3EW8 A;  1TBJ A;  1TBH A;  5A2S A;  3M1R A;  4RHJ A;  4QA7 A;  4RLA A;  4CBT A;  5G0I A;  5FCW A;  5THU A;  1P8S A;  4BZ7 A;  4CQF A;  1RLA A;  1WVA A;  4A69 A;  4MYK A;  2A0M A;  5DC5 A;  2VQM A;  3DJ8 A;  3RQD A;  4CEV A;  4IU1 A;  1TBL A;  4MXR A;  5EFB D;  4DZ4 A;  4RHI A;  5EFH A;  1W22 A;  5G12 A;  1C3S A;  3LHL A;  1C3R A;  3MZ6 A;  2VQO A;  4GSZ A;  3MAX A;  4IXV A;  4IU5 A;  3ZNS A;  3ZNR A;  2VQJ A;  5DC8 A;  3THE A;  1WOH A;  2V5X A;  1ZZ0 A;  4Q3U A;  3TH7 A;  3CEV A;  5IWG A;  4Q3S A;  3Q9B A;  2PHA A;  4LXZ A;  5G0H A;  5G3W A;  5EF7 A;  3C0Y A;  3F06 A;  4RHK A;  1P8Q A;  5EF8 A;  1HQF A;  3SKK A;  3E9B A;  5G0G A;  1P8O A;  3MZ3 A;  3THJ A;  1T4P A;  4FCI A;  4BZ6 A;  4QA4 A;  4ZUO A;  5THT A;  2EIV A;  4HWW A;  2VQW G;  4Q41 A;  5G11 A;  4QA3 A;  3MMR A;  4RN0 A;  5EFN A;  5G1B A;  5HJA A;  3Q9E A;  3E8Q A;  1D3V A;  1P8P A;  4QA2 A;  3RLA A;  4RN2 A;  4IE2 A;  5FUE A;  3TF3 A;  1WOG A;  3MZ4 A;  1R1O A;  1VKG A;  1HQX A;  2V5W A;  2VCG A;  3SL1 A;  3THH A;  5JI5 A;  5CEV A;  3F0R A;  4RN1 A;  3NIQ A;  4Q3R A;  3NIO A;  2EF5 A;  1CEV A;  5LI3 A;  3Q9C A;  4MYL A;  3EWF A;  5G0J A;  1P8M A;  3SL0 A;  4Q40 A;  3SFF A;  1TA1 A;  3MEN A;  3SJT A;  3GN0 A;  3E6V A;  4BKX B;  1ZPG A;  4MYN A;  4BZ8 A;  5THS A;  1P8N A;  1T5F A;  4RHL A;  3LP7 A;  4ZUQ A;  1P8R A;  1HQG A;  4MYF A;  4HXQ A;  4GSV A;  3MFV A;  5DC6 A;  2VQQ A;  1T5G A;  3LP4 A;  3MFW A;  1T4R A;  4IU4 A;  3KV2 A;  5EEF A;  4RHM A;  4IE3 A;  2EF4 A;  4Q3P A;  4FCK A;  1PQ3 A;  2VQV A;  2AEB A;  1WVB A;  2PLL A;  5G10 A;  5G13 A;  5G0X A;  1T69 A;  1HQH A;  1HQ5 A;  3NIP A;  5G0Y A;  4ZUP A;  2PHO A;  1GQ7 A;  4QA6 A;  4ZUN A;  1T4S A;  5EFK B;  5HJ9 A;  5EFG A;  5D1D A;  4ZUM A;  1T64 A;  4IE1 A;  4Q3R C;  4GWD A;  1ZZ3 A;  3E6K A;  1WOI A;  4I06 A;  4G3H A;  4HZE A;  4IXU A;  5DC7 A;  5RLA A;  4ZUR A;  4Q3T A;  4ITY A; 
#chains in the Genus database with same CATH homology
 3MJL A;  4GWC A;  4IU0 A;  1GQ6 A;  4Q3Q A;  4Q3V A;  2ZAV A;  4GSM A;  2CEV A;  4Q42 A;  1XFK A;  3E8Z A;  4RHQ A;  1T4T A;  2RLA A;  3PZL A;  3F80 A;  3GMZ A;  1ZPE A;  1TBJ A;  1TBH A;  3M1R A;  4RHJ A;  4RLA A;  1P8S A;  1RLA A;  1WVA A;  4MYK A;  2A0M A;  3DJ8 A;  4CEV A;  4IU1 A;  1TBL A;  4MXR A;  4DZ4 A;  4RHI A;  3LHL A;  4GSZ A;  4IXV A;  4IU5 A;  3THE A;  1WOH A;  4Q3U A;  3TH7 A;  3CEV A;  4Q3S A;  2PHA A;  4RHK A;  1P8Q A;  3SKK A;  1HQF A;  3E9B A;  1P8O A;  3THJ A;  1T4P A;  4FCI A;  2EIV A;  4HWW A;  4Q41 A;  3MMR A;  5HJA A;  3E8Q A;  1D3V A;  1P8P A;  3RLA A;  4IE2 A;  3TF3 A;  1WOG A;  1R1O A;  1HQX A;  3SL1 A;  3THH A;  5CEV A;  3NIQ A;  4Q3R A;  3NIO A;  2EF5 A;  1CEV A;  4MYL A;  1P8M A;  3SL0 A;  4Q40 A;  1TA1 A;  3SJT A;  3GN0 A;  3E6V A;  1ZPG A;  4MYN A;  1P8N A;  1T5F A;  4RHL A;  3LP7 A;  1P8R A;  1HQG A;  4MYF A;  4HXQ A;  4GSV A;  3MFV A;  1T5G A;  3LP4 A;  3MFW A;  1T4R A;  4IU4 A;  3KV2 A;  4RHM A;  4IE3 A;  2EF4 A;  4Q3P A;  4FCK A;  1PQ3 A;  2AEB A;  1WVB A;  2PLL A;  1HQH A;  1HQ5 A;  3NIP A;  2PHO A;  1GQ7 A;  5HJ9 A;  1T4S A;  4IE1 A;  4Q3R C;  4GWD A;  3E6K A;  1WOI A;  4I06 A;  4G3H A;  4HZE A;  4IXU A;  5RLA A;  4Q3T A;  4ITY A; 
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