5G0YA

Pseudomonas aeruginosa hdah unliganded.
Total Genus 136
50100150200250300350020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
372
structure length
372
Chain Sequence
RRTAFFFDELCLWHAAGPHALTLPVGGWVQPPAAAGHAESPETKRRLKSLLDVSGLTARLQLRSAPPASDEDLLRVHPAHYLERFKALSDAGGGSLGQDAPIGPGSYEIARLSAGLAIAALDAVLAGEADNAYSLSRPPGHHCLPDQAMGFCFFANIAVAIEAAKARHGVERVAVLDWDVHHGNGTQAIYYRRDDVLSISLHQDGCFPPGYSGAEDIGEDRGRGFNLNVPLLPGGGHDAYMQAMQRIVLPALERFRPQLIVVASGFDANAVDPLARMQLHSDSFRAMTAMVRDAAERHAGGRLVVVHEGGYSEAYVPFCGLAVIEELSGVRSAVRDPLRDFIELQQPNAAFRDFQRQRLEELAAQFGLCPAQ
5010015020025030035035030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS7 (133-136)3H2 (58-61)S1 (5-8)3H1 (11-14)TII1 (105-108)S3 (25-26)TIV1 (21-24)S2 (21-22)TII'2 (28-31)TIV3 (39-42)AH1 (43-56)AH4 (108-128)S4 (63-65)AH2 (72-77)TI1 (142-145)TI2 (146-149)AH3 (81-93)TI'1 (151-154)S6 (102-104)S5 (96-99)TIV4 (99-102)TIV7 (138-141)AH5 (158-170)AH9 (317-330)TIV5 (129-132)TI'2 (301-304)S12 (305-309)O1 (156-158)S8 (175-179)O2 (184-186)AH6 (186-192)TI3 (192-195)TI4 (195-198)TIV10 (259-262)S11 (261-266)S9 (198-205)TII2 (205-208)S10 (228-233)TIV9 (208-211)TI5 (215-218)TI8 (274-277)TIV8 (207-210)TI7 (271-274)TII3 (210-213)3H3 (222-224)TII4 (224-227)TII5 (234-237)AH11 (351-368)AH10 (340-347)AH7 (239-257)AH8 (283-301)TI6 (268-271)TI9 (314-317)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Pseudomonas aeruginosa
publication title Crystal Structure of a Histone Deacetylase Homologue from Pseudomonas aeruginosa.
pubmed doi rcsb
molecule keywords HDAH
total genus 136
structure length 372
sequence length 372
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 5g0yA00
4QA5A 4QA4A 5G13A 4CBYA 5DC5A 3EZPA 5THSA 1C3PA 4CQFA 2V5XA 3MZ3A 4QA1A 2VQOA 5G0GA 4RN1A 5A2SA 5ICNB 1T67A 1W22A 5G1BA 3C0ZA 4BKXB 5G0XA 4BZ7A 5EF8A 5G11A 4QA6A 4QA0A 1ZZ1A 3RQDA 5THTA 1C3SA 5LI3A 5G0YA 4ZUPA 3MZ7A 5EEFA 2VQJA 5EF7A 5G0HA 4BZ8A 5G1CA 4ZURA 3MZ6A 5G1AA 2GH6A 2VQQA 3C10A 5DC6A 4ZUMA 4ZUNA 5EEMA 3MAXA 5G10A 4BZ9A 5JI5A 5EFNA 3Q9FA 5G0IA 5EFKB 5FCWA 4LXZA 5BWZA 5IX0A 1ZZ0A 5EFBD 5D1BA 1ZZ3A 3Q9EA 3ZNSA 4LY1A 1T69A 4ZUQA 5EFGA 5G12A 5D1CA 2VQWG 4CBTA 5D1DA 3C0YA 4ZUOA 3ZNRA 2VCGA 1T64A 3F07A 5IWGA 5FUEA 3EZTA 5THVA 2VQMA 5EEIA 5G3WA 3SFFA 2VQVA 1VKGA 4A69A 3F0RA 5G17A 4BZ6A 5EFHA 3Q9BA 4QA2A 5EEKA 5EENA 5EFJD 4RN2A 3F06A 1C3RA 3Q9CA 3EW8A 5THUA 3SFHA 4BZ5A 3EWFA 5G0JA 4QA3A 4RN0A 3MENA 4QA7A 5DC7A 3MZ4A 5DC8A 2V5WA
chains in the Genus database with same CATH superfamily
3E6KA 3MMRA 4MYNA 5DC7A 1D3VA 4RLAA 5RLAA 4QA5A 3SKKA 3THHA 1P8PA 4HZEA 1T4RA 2PLLA 4QA4A 1ZPEA 5G13A 4CBYA 5CEVA 5DC5A 3MFWA 2PHAA 3EZPA 5THSA 4IE3A 3TF3A 1C3PA 4CQFA 2V5XA 3MZ3A 4Q42A 2RLAA 4Q3TA 4QA1A 2VQOA 5G0GA 1TBJA 4G3HA 4RN1A 5A2SA 5ICNB 4IU1A 1T67A 1W22A 1ZPGA 1PQ3A 3F80A 4MYLA 3C0ZA 5G1BA 5G0XA 4BKXB 4BZ7A 4RHMA 1XFKA 4RHQA 5EF8A 5G11A 4QA6A 4QA0A 1P8RA 3NIQA 1CEVA 1HQFA 4RHIA 4IU0A 3E9BA 1ZZ1A 4HXQA 3RQDA 3SL0A 1WVBA 5THTA 1C3SA 5LI3A 4RHKA 3E8ZA 5G0YA 4Q41A 1T4SA 1R1OA 4ZUPA 4Q3VA 3MZ7A 4DZ4A 4Q3RC 5EEFA 4IXVA 1WOIA 2VQJA 5EF7A 5G0HA 2PHOA 1P8MA 1WOHA 3GMZA 3KV2A 4BZ8A 3SJTA 5G1CA 1P8SA 4Q3SA 4ZURA 3MZ6A 3MJLA 4GWCA 5G1AA 2GH6A 2VQQA 3C10A 5DC6A 4ZUMA 1T5GA 1WVAA 5EEMA 4GSZA 4ZUNA 1T4TA 3MAXA 5G10A 4Q3QA 4BZ9A 5JI5A 3LHLA 5EFNA 3TH7A 3Q9FA 2A0MA 5G0IA 1P8OA 1TBLA 5EFKB 3SL1A 5FCWA 4IXUA 4GSVA 4LXZA 2CEVA 1WOGA 5BWZA 4IE1A 1ZZ0A 4RHJA 5D1BA 5EFBD 5IX0A 1HQHA 1P8NA 1ZZ3A 3Q9EA 3ZNSA 4LY1A 1GQ7A 1T69A 4ZUQA 2EF5A 1GQ6A 5EFGA 5G12A 3DJ8A 5D1CA 2VQWG 3NIOA 4CBTA 5D1DA 3C0YA 4ZUOA 3THEA 3ZNRA 1T64A 2VCGA 3F07A 5IWGA 3LP7A 1HQGA 3RLAA 4Q3UA 5FUEA 5HJAA 4GWDA 2EIVA 1TA1A 3EZTA 5THVA 3MFVA 2VQMA 3NIPA 4IU4A 1T4PA 1T5FA 2ZAVA 5EEIA 5G3WA 5HJ9A 3SFFA 2VQVA 1VKGA 3GN0A 4Q3RA 4A69A 3F0RA 3PZLA 1HQXA 3E8QA 5G17A 1TBHA 4FCKA 4MYKA 3E6VA 4ITYA 5EFHA 3M1RA 4MYFA 4BZ6A 3CEVA 1RLAA 3Q9BA 4IE2A 4Q40A 4CEVA 4QA2A 5EEKA 1P8QA 5EENA 5EFJD 4MXRA 2EF4A 4RN2A 3F06A 1C3RA 3LP4A 3EW8A 3Q9CA 4FCIA 4IU5A 5THUA 3SFHA 4BZ5A 3EWFA 4RHLA 5G0JA 4QA3A 4RN0A 1HQ5A 3THJA 4Q3PA 3MENA 4QA7A 4I06A 2AEBA 4HWWA 4GSMA 3MZ4A 5DC8A 2V5WA
chains in the Genus database with same CATH topology
4QA5A 4QA4A 5G13A 4CBYA 5DC5A 3EZPA 5THSA 1C3PA 4CQFA 2V5XA 3MZ3A 4QA1A 2VQOA 5G0GA 4RN1A 5A2SA 5ICNB 1T67A 1W22A 5G1BA 3C0ZA 4BKXB 5G0XA 4BZ7A 5EF8A 5G11A 4QA6A 4QA0A 1ZZ1A 3RQDA 5THTA 1C3SA 5LI3A 5G0YA 4ZUPA 3MZ7A 5EEFA 2VQJA 5EF7A 5G0HA 4BZ8A 5G1CA 4ZURA 3MZ6A 5G1AA 2GH6A 2VQQA 3C10A 5DC6A 4ZUMA 4ZUNA 5EEMA 3MAXA 5G10A 4BZ9A 5JI5A 5EFNA 3Q9FA 5G0IA 5EFKB 5FCWA 4LXZA 5BWZA 5IX0A 1ZZ0A 5EFBD 5D1BA 1ZZ3A 3Q9EA 3ZNSA 4LY1A 1T69A 4ZUQA 5EFGA 5G12A 5D1CA 2VQWG 4CBTA 5D1DA 3C0YA 4ZUOA 3ZNRA 2VCGA 1T64A 3F07A 5IWGA 5FUEA 3EZTA 5THVA 2VQMA 5EEIA 5G3WA 3SFFA 2VQVA 1VKGA 4A69A 3F0RA 5G17A 4BZ6A 5EFHA 3Q9BA 4QA2A 5EEKA 5EENA 5EFJD 4RN2A 3F06A 1C3RA 3Q9CA 3EW8A 5THUA 3SFHA 4BZ5A 3EWFA 5G0JA 4QA3A 4RN0A 3MENA 4QA7A 5DC7A 3MZ4A 5DC8A 2V5WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QA5 A;  4QA4 A;  5G13 A;  4CBY A;  5DC5 A;  3EZP A;  5THS A;  1C3P A;  4CQF A;  2V5X A;  3MZ3 A;  4QA1 A;  2VQO A;  5G0G A;  4RN1 A;  5A2S A;  5ICN B;  1T67 A;  1W22 A;  5G1B A;  3C0Z A;  4BKX B;  5G0X A;  4BZ7 A;  5EF8 A;  5G11 A;  4QA6 A;  4QA0 A;  1ZZ1 A;  3RQD A;  5THT A;  1C3S A;  5LI3 A;  5G0Y A;  4ZUP A;  3MZ7 A;  5EEF A;  2VQJ A;  5EF7 A;  5G0H A;  4BZ8 A;  5G1C A;  4ZUR A;  3MZ6 A;  5G1A A;  2GH6 A;  2VQQ A;  3C10 A;  5DC6 A;  4ZUM A;  4ZUN A;  5EEM A;  3MAX A;  5G10 A;  4BZ9 A;  5JI5 A;  5EFN A;  3Q9F A;  5G0I A;  5EFK B;  5FCW A;  4LXZ A;  5BWZ A;  5IX0 A;  1ZZ0 A;  5EFB D;  5D1B A;  1ZZ3 A;  3Q9E A;  3ZNS A;  4LY1 A;  1T69 A;  4ZUQ A;  5EFG A;  5G12 A;  5D1C A;  2VQW G;  4CBT A;  5D1D A;  3C0Y A;  4ZUO A;  3ZNR A;  2VCG A;  1T64 A;  3F07 A;  5IWG A;  5FUE A;  3EZT A;  5THV A;  2VQM A;  5EEI A;  5G3W A;  3SFF A;  2VQV A;  1VKG A;  4A69 A;  3F0R A;  5G17 A;  4BZ6 A;  5EFH A;  3Q9B A;  4QA2 A;  5EEK A;  5EEN A;  5EFJ D;  4RN2 A;  3F06 A;  1C3R A;  3Q9C A;  3EW8 A;  5THU A;  3SFH A;  4BZ5 A;  3EWF A;  5G0J A;  4QA3 A;  4RN0 A;  3MEN A;  4QA7 A;  5DC7 A;  3MZ4 A;  5DC8 A;  2V5W A; 
#chains in the Genus database with same CATH topology
 3E6K A;  3MMR A;  4MYN A;  5DC7 A;  1D3V A;  4RLA A;  5RLA A;  4QA5 A;  3SKK A;  3THH A;  1P8P A;  4HZE A;  1T4R A;  2PLL A;  4QA4 A;  1ZPE A;  5G13 A;  4CBY A;  5CEV A;  5DC5 A;  3MFW A;  2PHA A;  3EZP A;  5THS A;  4IE3 A;  3TF3 A;  1C3P A;  4CQF A;  2V5X A;  3MZ3 A;  4Q42 A;  2RLA A;  4Q3T A;  4QA1 A;  2VQO A;  5G0G A;  1TBJ A;  4G3H A;  4RN1 A;  5A2S A;  5ICN B;  4IU1 A;  1T67 A;  1W22 A;  1ZPG A;  1PQ3 A;  3F80 A;  4MYL A;  3C0Z A;  5G1B A;  5G0X A;  4BKX B;  4BZ7 A;  4RHM A;  1XFK A;  4RHQ A;  5EF8 A;  5G11 A;  4QA6 A;  4QA0 A;  1P8R A;  3NIQ A;  1CEV A;  1HQF A;  4RHI A;  4IU0 A;  3E9B A;  1ZZ1 A;  4HXQ A;  3RQD A;  3SL0 A;  1WVB A;  5THT A;  1C3S A;  5LI3 A;  4RHK A;  3E8Z A;  5G0Y A;  4Q41 A;  1T4S A;  1R1O A;  4ZUP A;  4Q3V A;  3MZ7 A;  4DZ4 A;  4Q3R C;  5EEF A;  4IXV A;  1WOI A;  2VQJ A;  5EF7 A;  5G0H A;  2PHO A;  1P8M A;  1WOH A;  3GMZ A;  3KV2 A;  4BZ8 A;  3SJT A;  5G1C A;  1P8S A;  4Q3S A;  4ZUR A;  3MZ6 A;  3MJL A;  4GWC A;  5G1A A;  2GH6 A;  2VQQ A;  3C10 A;  5DC6 A;  4ZUM A;  1T5G A;  1WVA A;  5EEM A;  4GSZ A;  4ZUN A;  1T4T A;  3MAX A;  5G10 A;  4Q3Q A;  4BZ9 A;  5JI5 A;  3LHL A;  5EFN A;  3TH7 A;  3Q9F A;  2A0M A;  5G0I A;  1P8O A;  1TBL A;  5EFK B;  3SL1 A;  5FCW A;  4IXU A;  4GSV A;  4LXZ A;  2CEV A;  1WOG A;  5BWZ A;  4IE1 A;  1ZZ0 A;  4RHJ A;  5D1B A;  5EFB D;  5IX0 A;  1HQH A;  1P8N A;  1ZZ3 A;  3Q9E A;  3ZNS A;  4LY1 A;  1GQ7 A;  1T69 A;  4ZUQ A;  2EF5 A;  1GQ6 A;  5EFG A;  5G12 A;  3DJ8 A;  5D1C A;  2VQW G;  3NIO A;  4CBT A;  5D1D A;  3C0Y A;  4ZUO A;  3THE A;  3ZNR A;  1T64 A;  2VCG A;  3F07 A;  5IWG A;  3LP7 A;  1HQG A;  3RLA A;  4Q3U A;  5FUE A;  5HJA A;  4GWD A;  2EIV A;  1TA1 A;  3EZT A;  5THV A;  3MFV A;  2VQM A;  3NIP A;  4IU4 A;  1T4P A;  1T5F A;  2ZAV A;  5EEI A;  5G3W A;  5HJ9 A;  3SFF A;  2VQV A;  1VKG A;  3GN0 A;  4Q3R A;  4A69 A;  3F0R A;  3PZL A;  1HQX A;  3E8Q A;  5G17 A;  1TBH A;  4FCK A;  4MYK A;  3E6V A;  4ITY A;  5EFH A;  3M1R A;  4MYF A;  4BZ6 A;  3CEV A;  1RLA A;  3Q9B A;  4IE2 A;  4Q40 A;  4CEV A;  4QA2 A;  5EEK A;  1P8Q A;  5EEN A;  5EFJ D;  4MXR A;  2EF4 A;  4RN2 A;  3F06 A;  1C3R A;  3LP4 A;  3EW8 A;  3Q9C A;  4FCI A;  4IU5 A;  5THU A;  3SFH A;  4BZ5 A;  3EWF A;  4RHL A;  5G0J A;  4QA3 A;  4RN0 A;  1HQ5 A;  3THJ A;  4Q3P A;  3MEN A;  4QA7 A;  4I06 A;  2AEB A;  4HWW A;  4GSM A;  3MZ4 A;  5DC8 A;  2V5W A; 
#chains in the Genus database with same CATH homology
 4QA5 A;  4QA4 A;  5G13 A;  4CBY A;  5DC5 A;  3EZP A;  5THS A;  1C3P A;  4CQF A;  2V5X A;  3MZ3 A;  4QA1 A;  2VQO A;  5G0G A;  4RN1 A;  5A2S A;  5ICN B;  1T67 A;  1W22 A;  5G1B A;  3C0Z A;  4BKX B;  5G0X A;  4BZ7 A;  5EF8 A;  5G11 A;  4QA6 A;  4QA0 A;  1ZZ1 A;  3RQD A;  5THT A;  1C3S A;  5LI3 A;  5G0Y A;  4ZUP A;  3MZ7 A;  5EEF A;  2VQJ A;  5EF7 A;  5G0H A;  4BZ8 A;  5G1C A;  4ZUR A;  3MZ6 A;  5G1A A;  2GH6 A;  2VQQ A;  3C10 A;  5DC6 A;  4ZUM A;  4ZUN A;  5EEM A;  3MAX A;  5G10 A;  4BZ9 A;  5JI5 A;  5EFN A;  3Q9F A;  5G0I A;  5EFK B;  5FCW A;  4LXZ A;  5BWZ A;  5IX0 A;  1ZZ0 A;  5EFB D;  5D1B A;  1ZZ3 A;  3Q9E A;  3ZNS A;  4LY1 A;  1T69 A;  4ZUQ A;  5EFG A;  5G12 A;  5D1C A;  2VQW G;  4CBT A;  5D1D A;  3C0Y A;  4ZUO A;  3ZNR A;  2VCG A;  1T64 A;  3F07 A;  5IWG A;  5FUE A;  3EZT A;  5THV A;  2VQM A;  5EEI A;  5G3W A;  3SFF A;  2VQV A;  1VKG A;  4A69 A;  3F0R A;  5G17 A;  4BZ6 A;  5EFH A;  3Q9B A;  4QA2 A;  5EEK A;  5EEN A;  5EFJ D;  4RN2 A;  3F06 A;  1C3R A;  3Q9C A;  3EW8 A;  5THU A;  3SFH A;  4BZ5 A;  3EWF A;  5G0J A;  4QA3 A;  4RN0 A;  3MEN A;  4QA7 A;  5DC7 A;  3MZ4 A;  5DC8 A;  2V5W A; 
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