5G1BA

Bordetella alcaligenes hdah native
Total Genus 139
50100150200250300350020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
371
structure length
371
Chain Sequence
HHHAIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLADIR
5010015020025030035035030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (9-12)AH4 (107-127)EMPTYTIV1 (19-22)TVIII1 (33-36)TI1 (36-39)TIV2 (20-23)AH1 (40-53)TIV4 (137-140)AH9 (316-329)3H3 (55-58)TI4 (145-148)AH3 (78-89)AH5 (157-168)TIV5 (153-156)S3 (94-95)TI2 (90-93)TII1 (104-107)TIV3 (98-101)S4 (102-103)TI'1 (150-153)TI3 (141-144)S5 (132-135)S10 (304-308)AH6 (185-191)TI5 (191-194)S7 (197-204)S6 (174-178)TVIII5 (258-261)O1 (183-185)TII2 (204-207)TI9 (267-270)TIV6 (207-210)TI6 (194-197)3H4 (221-223)S8 (227-232)TVIII4 (206-209)3H5 (362-367)TI8 (214-217)TII3 (223-226)AH7 (238-256)TII4 (233-236)TI10 (270-273)TI11 (273-276)TIV7 (313-316)AH8 (282-300)TI'2 (300-303)AH10 (338-344)AH11 (352-360)S1 (3-6)S2 (60-61)AH2 (69-74)S9 (260-265)3H2 (26-28)TVIII2 (128-131)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Alcaligenes
publication title The thermodynamic signature of ligand binding to histone deacetylase-like amidohydrolases is most sensitive to the flexibility in the L2-loop lining the active site pocket.
pubmed doi rcsb
molecule keywords HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE
total genus 139
structure length 371
sequence length 371
chains with identical sequence B
ec nomenclature ec 3.5.1.4: Amidase.
pdb deposition date 2016-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 5g1bA00
1C3RA 3MENA 3RQDA 3F0RA 2VQMA 5EFKB 5THUA 4CBTA 5G10A 3EZPA 3MZ3A 4RN1A 5G0GA 4BZ7A 3SFFA 3EW8A 4ZURA 3SFHA 5ICNB 5G0IA 2V5WA 1T64A 3F06A 5D1CA 5EEMA 3C0ZA 5EFNA 4RN0A 3ZNSA 4QA6A 2VQQA 3Q9EA 5G11A 1C3PA 5DC8A 5EF7A 5LI3A 4QA4A 5FCWA 5EFHA 4QA5A 5D1DA 5FUEA 5G0YA 5EFJD 5DC5A 4QA7A 4CQFA 5EFGA 3Q9FA 5G3WA 4BKXB 5THTA 4BZ9A 2VQJA 4RN2A 4ZUMA 4BZ8A 3C0YA 4ZUOA 4QA3A 4QA1A 2VQWG 5G0HA 3ZNRA 1W22A 3EWFA 1T69A 2VCGA 4A69A 4CBYA 5EEFA 1C3SA 1T67A 5THSA 3MZ6A 5G1AA 5G1BA 4BZ6A 3F07A 5A2SA 5EEIA 1ZZ1A 4ZUNA 5THVA 3MZ4A 4LY1A 5EENA 5DC6A 4BZ5A 5G0JA 4ZUPA 5EEKA 1ZZ0A 5IX0A 3MZ7A 5G17A 4ZUQA 5G13A 4QA2A 5D1BA 4QA0A 3Q9BA 5G12A 5G1CA 5BWZA 3MAXA 5EFBD 3EZTA 1VKGA 2VQOA 5EF8A 3C10A 5DC7A 5G0XA 2GH6A 1ZZ3A 4LXZA 5IWGA 2V5XA 2VQVA 3Q9CA 5JI5A
chains in the Genus database with same CATH superfamily
4FCIA 3THJA 1C3RA 3MENA 2EF5A 3CEVA 4HZEA 4Q3RC 4IXUA 3RQDA 1P8OA 4RHJA 3SJTA 4CBTA 2EIVA 1R1OA 1HQGA 4Q3UA 4IE3A 3F0RA 2VQMA 5EFKB 5THUA 1CEVA 1PQ3A 4RHKA 2A0MA 2EF4A 4I06A 4IU5A 5G10A 3GN0A 3E6KA 5RLAA 3EZPA 3NIOA 5HJ9A 3MZ3A 1ZPGA 4MYKA 4RN1A 1ZPEA 5G0GA 2PHAA 4BZ7A 3SFFA 3EW8A 3MJLA 4ZURA 3SFHA 4IU1A 5ICNB 5G0IA 2V5WA 1T64A 1TBLA 3M1RA 3E9BA 3F06A 4HWWA 4MYFA 5D1CA 4FCKA 4IE1A 5EEMA 3C0ZA 1P8SA 2PLLA 5EFNA 4RN0A 4Q3TA 3ZNSA 4DZ4A 4Q3PA 4QA6A 1P8MA 2VQQA 3LHLA 1WOIA 4RHMA 4IU4A 1T4PA 3Q9EA 3PZLA 5G11A 1C3PA 5DC8A 5EF7A 4Q42A 4QA4A 4CEVA 5LI3A 4Q3QA 5FCWA 2AEBA 1D3VA 1T4SA 4RHQA 5EFHA 4QA5A 4GSVA 5D1DA 5FUEA 5G0YA 3E6VA 3THHA 4Q40A 5DC5A 4QA7A 5EFJD 4CQFA 5EFGA 1WVAA 3Q9FA 3SL1A 1WVBA 3MFVA 4RHLA 5G3WA 4G3HA 4BKXB 1HQXA 5THTA 1T4TA 1T5GA 2VQJA 1GQ6A 4BZ9A 4RN2A 3LP4A 4ZUMA 4BZ8A 3C0YA 4RHIA 4QA3A 4QA1A 4IE2A 4ZUOA 3SKKA 1WOGA 2ZAVA 4GSMA 1T4RA 4GSZA 2VQWG 5G0HA 4Q3VA 3ZNRA 1W22A 4MXRA 3THEA 3EWFA 4MYNA 4MYLA 5CEVA 5HJAA 3TF3A 1WOHA 1P8PA 3RLAA 1RLAA 1T69A 2VCGA 4A69A 4Q41A 1HQFA 3E8QA 4CBYA 3DJ8A 4IXVA 3MFWA 1C3SA 1T67A 5EEFA 5THSA 3MZ6A 5G1AA 2PHOA 4Q3SA 5G1BA 3GMZA 4BZ6A 3SL0A 3F07A 3MMRA 5A2SA 5EEIA 1ZZ1A 4ZUNA 2CEVA 5THVA 3MZ4A 4LY1A 4Q3RA 5EENA 5DC6A 4BZ5A 2RLAA 3E8ZA 5G0JA 4ZUPA 5EEKA 3KV2A 1ZZ0A 5IX0A 3MZ7A 5G17A 1TA1A 4ZUQA 3NIPA 3NIQA 1P8QA 4RLAA 1P8RA 3F80A 4QA2A 5G13A 1GQ7A 5D1BA 4IU0A 4QA0A 4ITYA 3Q9BA 5G12A 4GWDA 5G1CA 1HQ5A 3MAXA 5EFBD 5BWZA 1T5FA 3EZTA 1VKGA 2VQOA 3C10A 5DC7A 5EF8A 1P8NA 4GWCA 5G0XA 1TBHA 3LP7A 1HQHA 1ZZ3A 2GH6A 4LXZA 1TBJA 2V5XA 5IWGA 4HXQA 1XFKA 3TH7A 2VQVA 3Q9CA 5JI5A
chains in the Genus database with same CATH topology
1C3RA 3MENA 3RQDA 3F0RA 2VQMA 5EFKB 5THUA 4CBTA 5G10A 3EZPA 3MZ3A 4RN1A 5G0GA 4BZ7A 3SFFA 3EW8A 4ZURA 3SFHA 5ICNB 5G0IA 2V5WA 1T64A 3F06A 5D1CA 5EEMA 3C0ZA 5EFNA 4RN0A 3ZNSA 4QA6A 2VQQA 3Q9EA 5G11A 1C3PA 5DC8A 5EF7A 5LI3A 4QA4A 5FCWA 5EFHA 4QA5A 5D1DA 5FUEA 5G0YA 5EFJD 5DC5A 4QA7A 4CQFA 5EFGA 3Q9FA 5G3WA 4BKXB 5THTA 4BZ9A 2VQJA 4RN2A 4ZUMA 4BZ8A 3C0YA 4ZUOA 4QA3A 4QA1A 2VQWG 5G0HA 3ZNRA 1W22A 3EWFA 1T69A 2VCGA 4A69A 4CBYA 5EEFA 1C3SA 1T67A 5THSA 3MZ6A 5G1AA 5G1BA 4BZ6A 3F07A 5A2SA 5EEIA 1ZZ1A 4ZUNA 5THVA 3MZ4A 4LY1A 5EENA 5DC6A 4BZ5A 5G0JA 4ZUPA 5EEKA 1ZZ0A 5IX0A 3MZ7A 5G17A 4ZUQA 5G13A 4QA2A 5D1BA 4QA0A 3Q9BA 5G12A 5G1CA 5BWZA 3MAXA 5EFBD 3EZTA 1VKGA 2VQOA 5EF8A 3C10A 5DC7A 5G0XA 2GH6A 1ZZ3A 4LXZA 5IWGA 2V5XA 2VQVA 3Q9CA 5JI5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1C3R A;  3MEN A;  3RQD A;  3F0R A;  2VQM A;  5EFK B;  5THU A;  4CBT A;  5G10 A;  3EZP A;  3MZ3 A;  4RN1 A;  5G0G A;  4BZ7 A;  3SFF A;  3EW8 A;  4ZUR A;  3SFH A;  5ICN B;  5G0I A;  2V5W A;  1T64 A;  3F06 A;  5D1C A;  5EEM A;  3C0Z A;  5EFN A;  4RN0 A;  3ZNS A;  4QA6 A;  2VQQ A;  3Q9E A;  5G11 A;  1C3P A;  5DC8 A;  5EF7 A;  5LI3 A;  4QA4 A;  5FCW A;  5EFH A;  4QA5 A;  5D1D A;  5FUE A;  5G0Y A;  5EFJ D;  5DC5 A;  4QA7 A;  4CQF A;  5EFG A;  3Q9F A;  5G3W A;  4BKX B;  5THT A;  4BZ9 A;  2VQJ A;  4RN2 A;  4ZUM A;  4BZ8 A;  3C0Y A;  4ZUO A;  4QA3 A;  4QA1 A;  2VQW G;  5G0H A;  3ZNR A;  1W22 A;  3EWF A;  1T69 A;  2VCG A;  4A69 A;  4CBY A;  5EEF A;  1C3S A;  1T67 A;  5THS A;  3MZ6 A;  5G1A A;  5G1B A;  4BZ6 A;  3F07 A;  5A2S A;  5EEI A;  1ZZ1 A;  4ZUN A;  5THV A;  3MZ4 A;  4LY1 A;  5EEN A;  5DC6 A;  4BZ5 A;  5G0J A;  4ZUP A;  5EEK A;  1ZZ0 A;  5IX0 A;  3MZ7 A;  5G17 A;  4ZUQ A;  5G13 A;  4QA2 A;  5D1B A;  4QA0 A;  3Q9B A;  5G12 A;  5G1C A;  5BWZ A;  3MAX A;  5EFB D;  3EZT A;  1VKG A;  2VQO A;  5EF8 A;  3C10 A;  5DC7 A;  5G0X A;  2GH6 A;  1ZZ3 A;  4LXZ A;  5IWG A;  2V5X A;  2VQV A;  3Q9C A;  5JI5 A; 
#chains in the Genus database with same CATH topology
 4FCI A;  3THJ A;  1C3R A;  3MEN A;  2EF5 A;  3CEV A;  4HZE A;  4Q3R C;  4IXU A;  3RQD A;  1P8O A;  4RHJ A;  3SJT A;  4CBT A;  2EIV A;  1R1O A;  1HQG A;  4Q3U A;  4IE3 A;  3F0R A;  2VQM A;  5EFK B;  5THU A;  1CEV A;  1PQ3 A;  4RHK A;  2A0M A;  2EF4 A;  4I06 A;  4IU5 A;  5G10 A;  3GN0 A;  3E6K A;  5RLA A;  3EZP A;  3NIO A;  5HJ9 A;  3MZ3 A;  1ZPG A;  4MYK A;  4RN1 A;  1ZPE A;  5G0G A;  2PHA A;  4BZ7 A;  3SFF A;  3EW8 A;  3MJL A;  4ZUR A;  3SFH A;  4IU1 A;  5ICN B;  5G0I A;  2V5W A;  1T64 A;  1TBL A;  3M1R A;  3E9B A;  3F06 A;  4HWW A;  4MYF A;  5D1C A;  4FCK A;  4IE1 A;  5EEM A;  3C0Z A;  1P8S A;  2PLL A;  5EFN A;  4RN0 A;  4Q3T A;  3ZNS A;  4DZ4 A;  4Q3P A;  4QA6 A;  1P8M A;  2VQQ A;  3LHL A;  1WOI A;  4RHM A;  4IU4 A;  1T4P A;  3Q9E A;  3PZL A;  5G11 A;  1C3P A;  5DC8 A;  5EF7 A;  4Q42 A;  4QA4 A;  4CEV A;  5LI3 A;  4Q3Q A;  5FCW A;  2AEB A;  1D3V A;  1T4S A;  4RHQ A;  5EFH A;  4QA5 A;  4GSV A;  5D1D A;  5FUE A;  5G0Y A;  3E6V A;  3THH A;  4Q40 A;  5DC5 A;  4QA7 A;  5EFJ D;  4CQF A;  5EFG A;  1WVA A;  3Q9F A;  3SL1 A;  1WVB A;  3MFV A;  4RHL A;  5G3W A;  4G3H A;  4BKX B;  1HQX A;  5THT A;  1T4T A;  1T5G A;  2VQJ A;  1GQ6 A;  4BZ9 A;  4RN2 A;  3LP4 A;  4ZUM A;  4BZ8 A;  3C0Y A;  4RHI A;  4QA3 A;  4QA1 A;  4IE2 A;  4ZUO A;  3SKK A;  1WOG A;  2ZAV A;  4GSM A;  1T4R A;  4GSZ A;  2VQW G;  5G0H A;  4Q3V A;  3ZNR A;  1W22 A;  4MXR A;  3THE A;  3EWF A;  4MYN A;  4MYL A;  5CEV A;  5HJA A;  3TF3 A;  1WOH A;  1P8P A;  3RLA A;  1RLA A;  1T69 A;  2VCG A;  4A69 A;  4Q41 A;  1HQF A;  3E8Q A;  4CBY A;  3DJ8 A;  4IXV A;  3MFW A;  1C3S A;  1T67 A;  5EEF A;  5THS A;  3MZ6 A;  5G1A A;  2PHO A;  4Q3S A;  5G1B A;  3GMZ A;  4BZ6 A;  3SL0 A;  3F07 A;  3MMR A;  5A2S A;  5EEI A;  1ZZ1 A;  4ZUN A;  2CEV A;  5THV A;  3MZ4 A;  4LY1 A;  4Q3R A;  5EEN A;  5DC6 A;  4BZ5 A;  2RLA A;  3E8Z A;  5G0J A;  4ZUP A;  5EEK A;  3KV2 A;  1ZZ0 A;  5IX0 A;  3MZ7 A;  5G17 A;  1TA1 A;  4ZUQ A;  3NIP A;  3NIQ A;  1P8Q A;  4RLA A;  1P8R A;  3F80 A;  4QA2 A;  5G13 A;  1GQ7 A;  5D1B A;  4IU0 A;  4QA0 A;  4ITY A;  3Q9B A;  5G12 A;  4GWD A;  5G1C A;  1HQ5 A;  3MAX A;  5EFB D;  5BWZ A;  1T5F A;  3EZT A;  1VKG A;  2VQO A;  3C10 A;  5DC7 A;  5EF8 A;  1P8N A;  4GWC A;  5G0X A;  1TBH A;  3LP7 A;  1HQH A;  1ZZ3 A;  2GH6 A;  4LXZ A;  1TBJ A;  2V5X A;  5IWG A;  4HXQ A;  1XFK A;  3TH7 A;  2VQV A;  3Q9C A;  5JI5 A; 
#chains in the Genus database with same CATH homology
 1C3R A;  3MEN A;  3RQD A;  3F0R A;  2VQM A;  5EFK B;  5THU A;  4CBT A;  5G10 A;  3EZP A;  3MZ3 A;  4RN1 A;  5G0G A;  4BZ7 A;  3SFF A;  3EW8 A;  4ZUR A;  3SFH A;  5ICN B;  5G0I A;  2V5W A;  1T64 A;  3F06 A;  5D1C A;  5EEM A;  3C0Z A;  5EFN A;  4RN0 A;  3ZNS A;  4QA6 A;  2VQQ A;  3Q9E A;  5G11 A;  1C3P A;  5DC8 A;  5EF7 A;  5LI3 A;  4QA4 A;  5FCW A;  5EFH A;  4QA5 A;  5D1D A;  5FUE A;  5G0Y A;  5EFJ D;  5DC5 A;  4QA7 A;  4CQF A;  5EFG A;  3Q9F A;  5G3W A;  4BKX B;  5THT A;  4BZ9 A;  2VQJ A;  4RN2 A;  4ZUM A;  4BZ8 A;  3C0Y A;  4ZUO A;  4QA3 A;  4QA1 A;  2VQW G;  5G0H A;  3ZNR A;  1W22 A;  3EWF A;  1T69 A;  2VCG A;  4A69 A;  4CBY A;  5EEF A;  1C3S A;  1T67 A;  5THS A;  3MZ6 A;  5G1A A;  5G1B A;  4BZ6 A;  3F07 A;  5A2S A;  5EEI A;  1ZZ1 A;  4ZUN A;  5THV A;  3MZ4 A;  4LY1 A;  5EEN A;  5DC6 A;  4BZ5 A;  5G0J A;  4ZUP A;  5EEK A;  1ZZ0 A;  5IX0 A;  3MZ7 A;  5G17 A;  4ZUQ A;  5G13 A;  4QA2 A;  5D1B A;  4QA0 A;  3Q9B A;  5G12 A;  5G1C A;  5BWZ A;  3MAX A;  5EFB D;  3EZT A;  1VKG A;  2VQO A;  5EF8 A;  3C10 A;  5DC7 A;  5G0X A;  2GH6 A;  1ZZ3 A;  4LXZ A;  5IWG A;  2V5X A;  2VQV A;  3Q9C A;  5JI5 A; 
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