5G1CA

Structure of hdac like protein from bordetella alcaligenes bound the photoswitchable pyrazole inhibitor cew395
Total Genus 142
50100150200250300350020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
142
sequence length
370
structure length
370
Chain Sequence
HHAIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLADIR
5010015020025030035035030025020015010050
020406080100120140Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (40-53)S1 (3-6)EMPTYTIV4 (137-140)3H1 (9-12)AH4 (107-127)TIV1 (19-22)TVIII1 (33-36)TIV2 (20-23)3H2 (26-28)TI1 (36-39)TIV7 (313-316)3H3 (55-58)S2 (60-61)AH2 (69-74)AH3 (78-89)TVIII3 (153-156)S3 (94-95)TI2 (90-93)TII1 (104-107)S4 (102-103)TIV3 (98-101)TI'1 (150-153)AH5 (157-168)TI3 (141-144)TI4 (145-148)AH6 (185-191)TI5 (191-194)S7 (197-204)S9 (260-265)O1 (183-185)TI10 (273-276)TVIII6 (206-209)S8 (227-232)TI6 (194-197)3H4 (221-223)TI7 (214-217)TII4 (233-236)TII2 (204-207)TIV6 (209-212)TII3 (223-226)AH11 (352-360)AH7 (238-256)TVIII7 (258-261)TI8 (267-270)TI9 (270-273)S10 (304-308)S5 (132-135)TVIII4 (171-174)S6 (174-178)AH8 (282-300)TI'2 (300-303)AH9 (316-329)AH10 (338-344)3H5 (362-367)TVIII2 (128-131)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Alcaligenes
publication title Toward Photopharmacological Antimicrobial Chemotherapy Using Photoswitchable Amidohydrolase Inhibitors.
pubmed doi rcsb
molecule keywords HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE
total genus 142
structure length 370
sequence length 370
chains with identical sequence B
ec nomenclature ec 3.5.1.4: Amidase.
pdb deposition date 2016-03-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 5g1cA00
5EF7A 4BZ9A 2VCGA 5EFGA 3C10A 5ICNB 5THSA 1T64A 4A69A 5D1DA 5FUEA 3SFHA 5G10A 3Q9BA 4ZUMA 1ZZ3A 3C0ZA 4QA1A 5THUA 5G12A 5LI3A 5EEMA 4QA7A 3MZ6A 5EFNA 5EENA 5G13A 2GH6A 4QA2A 5G1CA 5THTA 3EW8A 1C3RA 2V5WA 4BZ8A 4RN0A 4QA6A 5IWGA 4RN2A 5D1CA 2VQWG 5EFBD 5G11A 5BWZA 1C3SA 3ZNRA 5D1BA 4LY1A 5EFKB 5G0XA 3Q9EA 3MZ3A 2VQOA 5THVA 3Q9FA 5DC8A 3EZTA 4ZUPA 3MZ4A 3MAXA 1ZZ0A 5G1AA 4CBYA 4QA5A 5EEFA 5A2SA 4QA4A 4LXZA 3RQDA 4CBTA 5FCWA 4ZURA 5EEIA 4BZ5A 5G0HA 3F07A 3F06A 4RN1A 3EZPA 4BZ6A 1W22A 1VKGA 4BKXB 1T69A 5G1BA 3C0YA 3MENA 5EEKA 2V5XA 4QA0A 3SFFA 1ZZ1A 3Q9CA 2VQMA 3MZ7A 5EFJD 5DC6A 4QA3A 5JI5A 5G0GA 4ZUQA 5G0JA 5DC7A 2VQQA 5G17A 5G0IA 3EWFA 5G3WA 1C3PA 4ZUOA 3ZNSA 4ZUNA 5G0YA 5EF8A 3F0RA 2VQJA 5IX0A 4BZ7A 1T67A 2VQVA 5DC5A 4CQFA 5EFHA
chains in the Genus database with same CATH superfamily
4Q3RC 5EF7A 4BZ9A 2VCGA 5EFGA 3C10A 1P8OA 1T4RA 5THSA 5ICNB 4RHKA 1T64A 4A69A 3THHA 5D1DA 5FUEA 1D3VA 2AEBA 3SFHA 4RHIA 5G10A 3E8ZA 1P8PA 3Q9BA 4ZUMA 1ZPEA 1ZZ3A 3C0ZA 2A0MA 4QA1A 4Q40A 5THUA 1P8QA 3GN0A 5G12A 1T5FA 4FCIA 5LI3A 5EEMA 3PZLA 3E6KA 4QA7A 4IE3A 1XFKA 3MZ6A 4IXVA 1WOHA 5EFNA 1HQ5A 3CEVA 1T4TA 2PHAA 4Q41A 5EENA 4IU0A 5G13A 2GH6A 3M1RA 3KV2A 4QA2A 2CEVA 4DZ4A 1RLAA 4GSVA 4GSZA 5G1CA 5THTA 1WOGA 1C3RA 3EW8A 2V5WA 4I06A 2EF5A 4RN0A 4MYLA 3SJTA 4QA6A 4BZ8A 5IWGA 4RN2A 5D1CA 2VQWG 5EFBD 4IU1A 5G11A 5BWZA 1HQFA 1C3SA 3ZNRA 5D1BA 4LY1A 5EFKB 3LP4A 5G0XA 3Q9EA 3MZ3A 2VQOA 5THVA 1WVBA 2PHOA 4Q3TA 1TA1A 4HWWA 4IU4A 1HQHA 3Q9FA 2PLLA 5DC8A 3EZTA 4ZUPA 3MZ4A 1ZPGA 2ZAVA 3MAXA 1ZZ0A 5HJ9A 3RLAA 4HXQA 4MYKA 4IE2A 2EF4A 4MXRA 5G1AA 4HZEA 4CBYA 1P8RA 4RHJA 1T5GA 4QA5A 5EEFA 5A2SA 1P8NA 4QA4A 4LXZA 3MFWA 4RHMA 3RQDA 4CBTA 4CEVA 1CEVA 5FCWA 1WVAA 4ZURA 4FCKA 4RHQA 3E6VA 5EEIA 4BZ5A 5G0HA 3F07A 3F06A 4RN1A 1P8SA 3TF3A 3NIQA 3EZPA 4BZ6A 1W22A 1VKGA 4BKXB 1T69A 2RLAA 5HJAA 1GQ7A 5G1BA 4IXUA 4IU5A 5RLAA 3THEA 3C0YA 3MENA 3DJ8A 5EEKA 1HQXA 2V5XA 4GWDA 1P8MA 4Q3RA 4QA0A 4Q3UA 3GMZA 4Q3QA 1ZZ1A 3SFFA 3Q9CA 2VQMA 3MZ7A 1R1OA 3E9BA 4G3HA 4Q3PA 5EFJD 1TBJA 4Q3VA 5DC6A 4QA3A 2EIVA 5JI5A 5G0GA 4ZUQA 4RHLA 3SL0A 4Q3SA 5G0JA 1TBHA 3NIPA 5DC7A 2VQQA 5G17A 3MMRA 3NIOA 5G0IA 4Q42A 3EWFA 5G3WA 4IE1A 1C3PA 4ZUOA 1T4SA 3LHLA 3SL1A 3ZNSA 3MJLA 3THJA 1PQ3A 4ZUNA 5G0YA 3F80A 4GSMA 5EF8A 3SKKA 3TH7A 3F0RA 5CEVA 3LP7A 1HQGA 2VQJA 4MYNA 5IX0A 4BZ7A 1T67A 4GWCA 2VQVA 1TBLA 1GQ6A 5DC5A 1WOIA 4MYFA 4ITYA 1T4PA 3MFVA 4RLAA 4CQFA 3E8QA 5EFHA
chains in the Genus database with same CATH topology
5EF7A 4BZ9A 2VCGA 5EFGA 3C10A 5ICNB 5THSA 1T64A 4A69A 5D1DA 5FUEA 3SFHA 5G10A 3Q9BA 4ZUMA 1ZZ3A 3C0ZA 4QA1A 5THUA 5G12A 5LI3A 5EEMA 4QA7A 3MZ6A 5EFNA 5EENA 5G13A 2GH6A 4QA2A 5G1CA 5THTA 3EW8A 1C3RA 2V5WA 4BZ8A 4RN0A 4QA6A 5IWGA 4RN2A 5D1CA 2VQWG 5EFBD 5G11A 5BWZA 1C3SA 3ZNRA 5D1BA 4LY1A 5EFKB 5G0XA 3Q9EA 3MZ3A 2VQOA 5THVA 3Q9FA 5DC8A 3EZTA 4ZUPA 3MZ4A 3MAXA 1ZZ0A 5G1AA 4CBYA 4QA5A 5EEFA 5A2SA 4QA4A 4LXZA 3RQDA 4CBTA 5FCWA 4ZURA 5EEIA 4BZ5A 5G0HA 3F07A 3F06A 4RN1A 3EZPA 4BZ6A 1W22A 1VKGA 4BKXB 1T69A 5G1BA 3C0YA 3MENA 5EEKA 2V5XA 4QA0A 3SFFA 1ZZ1A 3Q9CA 2VQMA 3MZ7A 5EFJD 5DC6A 4QA3A 5JI5A 5G0GA 4ZUQA 5G0JA 5DC7A 2VQQA 5G17A 5G0IA 3EWFA 5G3WA 1C3PA 4ZUOA 3ZNSA 4ZUNA 5G0YA 5EF8A 3F0RA 2VQJA 5IX0A 4BZ7A 1T67A 2VQVA 5DC5A 4CQFA 5EFHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5EF7 A;  4BZ9 A;  2VCG A;  5EFG A;  3C10 A;  5ICN B;  5THS A;  1T64 A;  4A69 A;  5D1D A;  5FUE A;  3SFH A;  5G10 A;  3Q9B A;  4ZUM A;  1ZZ3 A;  3C0Z A;  4QA1 A;  5THU A;  5G12 A;  5LI3 A;  5EEM A;  4QA7 A;  3MZ6 A;  5EFN A;  5EEN A;  5G13 A;  2GH6 A;  4QA2 A;  5G1C A;  5THT A;  3EW8 A;  1C3R A;  2V5W A;  4BZ8 A;  4RN0 A;  4QA6 A;  5IWG A;  4RN2 A;  5D1C A;  2VQW G;  5EFB D;  5G11 A;  5BWZ A;  1C3S A;  3ZNR A;  5D1B A;  4LY1 A;  5EFK B;  5G0X A;  3Q9E A;  3MZ3 A;  2VQO A;  5THV A;  3Q9F A;  5DC8 A;  3EZT A;  4ZUP A;  3MZ4 A;  3MAX A;  1ZZ0 A;  5G1A A;  4CBY A;  4QA5 A;  5EEF A;  5A2S A;  4QA4 A;  4LXZ A;  3RQD A;  4CBT A;  5FCW A;  4ZUR A;  5EEI A;  4BZ5 A;  5G0H A;  3F07 A;  3F06 A;  4RN1 A;  3EZP A;  4BZ6 A;  1W22 A;  1VKG A;  4BKX B;  1T69 A;  5G1B A;  3C0Y A;  3MEN A;  5EEK A;  2V5X A;  4QA0 A;  3SFF A;  1ZZ1 A;  3Q9C A;  2VQM A;  3MZ7 A;  5EFJ D;  5DC6 A;  4QA3 A;  5JI5 A;  5G0G A;  4ZUQ A;  5G0J A;  5DC7 A;  2VQQ A;  5G17 A;  5G0I A;  3EWF A;  5G3W A;  1C3P A;  4ZUO A;  3ZNS A;  4ZUN A;  5G0Y A;  5EF8 A;  3F0R A;  2VQJ A;  5IX0 A;  4BZ7 A;  1T67 A;  2VQV A;  5DC5 A;  4CQF A;  5EFH A; 
#chains in the Genus database with same CATH topology
 4Q3R C;  5EF7 A;  4BZ9 A;  2VCG A;  5EFG A;  3C10 A;  1P8O A;  1T4R A;  5THS A;  5ICN B;  4RHK A;  1T64 A;  4A69 A;  3THH A;  5D1D A;  5FUE A;  1D3V A;  2AEB A;  3SFH A;  4RHI A;  5G10 A;  3E8Z A;  1P8P A;  3Q9B A;  4ZUM A;  1ZPE A;  1ZZ3 A;  3C0Z A;  2A0M A;  4QA1 A;  4Q40 A;  5THU A;  1P8Q A;  3GN0 A;  5G12 A;  1T5F A;  4FCI A;  5LI3 A;  5EEM A;  3PZL A;  3E6K A;  4QA7 A;  4IE3 A;  1XFK A;  3MZ6 A;  4IXV A;  1WOH A;  5EFN A;  1HQ5 A;  3CEV A;  1T4T A;  2PHA A;  4Q41 A;  5EEN A;  4IU0 A;  5G13 A;  2GH6 A;  3M1R A;  3KV2 A;  4QA2 A;  2CEV A;  4DZ4 A;  1RLA A;  4GSV A;  4GSZ A;  5G1C A;  5THT A;  1WOG A;  1C3R A;  3EW8 A;  2V5W A;  4I06 A;  2EF5 A;  4RN0 A;  4MYL A;  3SJT A;  4QA6 A;  4BZ8 A;  5IWG A;  4RN2 A;  5D1C A;  2VQW G;  5EFB D;  4IU1 A;  5G11 A;  5BWZ A;  1HQF A;  1C3S A;  3ZNR A;  5D1B A;  4LY1 A;  5EFK B;  3LP4 A;  5G0X A;  3Q9E A;  3MZ3 A;  2VQO A;  5THV A;  1WVB A;  2PHO A;  4Q3T A;  1TA1 A;  4HWW A;  4IU4 A;  1HQH A;  3Q9F A;  2PLL A;  5DC8 A;  3EZT A;  4ZUP A;  3MZ4 A;  1ZPG A;  2ZAV A;  3MAX A;  1ZZ0 A;  5HJ9 A;  3RLA A;  4HXQ A;  4MYK A;  4IE2 A;  2EF4 A;  4MXR A;  5G1A A;  4HZE A;  4CBY A;  1P8R A;  4RHJ A;  1T5G A;  4QA5 A;  5EEF A;  5A2S A;  1P8N A;  4QA4 A;  4LXZ A;  3MFW A;  4RHM A;  3RQD A;  4CBT A;  4CEV A;  1CEV A;  5FCW A;  1WVA A;  4ZUR A;  4FCK A;  4RHQ A;  3E6V A;  5EEI A;  4BZ5 A;  5G0H A;  3F07 A;  3F06 A;  4RN1 A;  1P8S A;  3TF3 A;  3NIQ A;  3EZP A;  4BZ6 A;  1W22 A;  1VKG A;  4BKX B;  1T69 A;  2RLA A;  5HJA A;  1GQ7 A;  5G1B A;  4IXU A;  4IU5 A;  5RLA A;  3THE A;  3C0Y A;  3MEN A;  3DJ8 A;  5EEK A;  1HQX A;  2V5X A;  4GWD A;  1P8M A;  4Q3R A;  4QA0 A;  4Q3U A;  3GMZ A;  4Q3Q A;  1ZZ1 A;  3SFF A;  3Q9C A;  2VQM A;  3MZ7 A;  1R1O A;  3E9B A;  4G3H A;  4Q3P A;  5EFJ D;  1TBJ A;  4Q3V A;  5DC6 A;  4QA3 A;  2EIV A;  5JI5 A;  5G0G A;  4ZUQ A;  4RHL A;  3SL0 A;  4Q3S A;  5G0J A;  1TBH A;  3NIP A;  5DC7 A;  2VQQ A;  5G17 A;  3MMR A;  3NIO A;  5G0I A;  4Q42 A;  3EWF A;  5G3W A;  4IE1 A;  1C3P A;  4ZUO A;  1T4S A;  3LHL A;  3SL1 A;  3ZNS A;  3MJL A;  3THJ A;  1PQ3 A;  4ZUN A;  5G0Y A;  3F80 A;  4GSM A;  5EF8 A;  3SKK A;  3TH7 A;  3F0R A;  5CEV A;  3LP7 A;  1HQG A;  2VQJ A;  4MYN A;  5IX0 A;  4BZ7 A;  1T67 A;  4GWC A;  2VQV A;  1TBL A;  1GQ6 A;  5DC5 A;  1WOI A;  4MYF A;  4ITY A;  1T4P A;  3MFV A;  4RLA A;  4CQF A;  3E8Q A;  5EFH A; 
#chains in the Genus database with same CATH homology
 5EF7 A;  4BZ9 A;  2VCG A;  5EFG A;  3C10 A;  5ICN B;  5THS A;  1T64 A;  4A69 A;  5D1D A;  5FUE A;  3SFH A;  5G10 A;  3Q9B A;  4ZUM A;  1ZZ3 A;  3C0Z A;  4QA1 A;  5THU A;  5G12 A;  5LI3 A;  5EEM A;  4QA7 A;  3MZ6 A;  5EFN A;  5EEN A;  5G13 A;  2GH6 A;  4QA2 A;  5G1C A;  5THT A;  3EW8 A;  1C3R A;  2V5W A;  4BZ8 A;  4RN0 A;  4QA6 A;  5IWG A;  4RN2 A;  5D1C A;  2VQW G;  5EFB D;  5G11 A;  5BWZ A;  1C3S A;  3ZNR A;  5D1B A;  4LY1 A;  5EFK B;  5G0X A;  3Q9E A;  3MZ3 A;  2VQO A;  5THV A;  3Q9F A;  5DC8 A;  3EZT A;  4ZUP A;  3MZ4 A;  3MAX A;  1ZZ0 A;  5G1A A;  4CBY A;  4QA5 A;  5EEF A;  5A2S A;  4QA4 A;  4LXZ A;  3RQD A;  4CBT A;  5FCW A;  4ZUR A;  5EEI A;  4BZ5 A;  5G0H A;  3F07 A;  3F06 A;  4RN1 A;  3EZP A;  4BZ6 A;  1W22 A;  1VKG A;  4BKX B;  1T69 A;  5G1B A;  3C0Y A;  3MEN A;  5EEK A;  2V5X A;  4QA0 A;  3SFF A;  1ZZ1 A;  3Q9C A;  2VQM A;  3MZ7 A;  5EFJ D;  5DC6 A;  4QA3 A;  5JI5 A;  5G0G A;  4ZUQ A;  5G0J A;  5DC7 A;  2VQQ A;  5G17 A;  5G0I A;  3EWF A;  5G3W A;  1C3P A;  4ZUO A;  3ZNS A;  4ZUN A;  5G0Y A;  5EF8 A;  3F0R A;  2VQJ A;  5IX0 A;  4BZ7 A;  1T67 A;  2VQV A;  5DC5 A;  4CQF A;  5EFH A; 
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