5G3WA

Structure of hdac like protein from bordetella alcaligenes in complex with the photoswitchable inhibitor cew65
Total Genus 136
50100150200250300350020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
369
structure length
369
Chain Sequence
HAIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLADIR
5010015020025030035035030025020015010050
020406080100120Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTVIII2 (128-131)AH1 (40-53)S1 (3-6)3H1 (9-12)AH4 (107-127)TIV4 (137-140)TVIII1 (33-36)TI1 (36-39)TIV1 (19-22)TIV8 (313-316)3H3 (55-58)AH9 (316-329)AH2 (69-74)AH3 (78-89)TIV5 (153-156)TI2 (90-93)TII1 (104-107)S3 (94-95)S4 (102-103)TIV3 (98-101)S5 (132-135)S9 (260-265)AH5 (157-169)TI3 (141-144)S6 (174-178)AH6 (185-191)TI4 (145-148)TVIII3 (171-174)TI6 (194-197)AH7 (238-256)O1 (183-185)TVIII5 (206-209)S7 (197-204)TI7 (214-217)S8 (227-232)TI5 (191-194)TII3 (223-226)TII2 (204-207)TI10 (273-276)TVIII6 (215-218)3H5 (362-367)3H4 (221-223)TII4 (233-236)AH8 (282-300)TI'2 (300-303)TVIII7 (258-261)TI8 (267-270)TI9 (270-273)S10 (304-308)AH11 (352-360)S2 (60-61)3H2 (26-28)TI'1 (150-153)AH10 (338-344)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Bordetella
publication title Toward Photopharmacological Antimicrobial Chemotherapy Using Photoswitchable Amidohydrolase Inhibitors.
pubmed doi rcsb
molecule keywords HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE
total genus 136
structure length 369
sequence length 369
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2016-05-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00850 Hist_deacetyl Histone deacetylase domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Histone deacetylase domain 5g3wA00
2VQQA 4ZUQA 4QA1A 3SFFA 1W22A 5EFBD 3F0RA 5IX0A 3C0ZA 4A69A 4CQFA 3Q9FA 5ICNB 5G12A 1ZZ3A 4RN1A 4ZUPA 4QA5A 4QA0A 3Q9BA 3MZ4A 3MZ7A 4QA7A 5EEFA 5DC6A 4LXZA 5EEKA 5G3WA 5DC7A 5THVA 5G0IA 5G0YA 4ZUMA 1T69A 5JI5A 1C3RA 2VQOA 5EFKB 4ZURA 5BWZA 5G10A 4RN2A 2VCGA 4LY1A 3Q9CA 4QA3A 3EWFA 3MZ3A 5EFNA 1VKGA 4ZUOA 1ZZ0A 5G1BA 3SFHA 5THUA 5EENA 5G1CA 2VQWG 5D1DA 5G17A 4BKXB 3ZNSA 4QA2A 3MAXA 2V5XA 3EZTA 4RN0A 5EFHA 5EEIA 1C3SA 4BZ6A 2VQVA 5EF8A 5G13A 3F07A 5G1AA 5DC5A 5G11A 5LI3A 2VQMA 5EF7A 3ZNRA 4CBTA 5EFJD 5THTA 5IWGA 3C0YA 5EEMA 5A2SA 5G0JA 4ZUNA 4CBYA 3C10A 1T67A 1T64A 2GH6A 3MZ6A 4BZ5A 2VQJA 5D1CA 4BZ7A 3RQDA 5G0GA 5G0HA 3MENA 5FUEA 4QA4A 5FCWA 1C3PA 2V5WA 3F06A 4BZ9A 5THSA 4QA6A 3EZPA 5G0XA 5DC8A 5D1BA 5EFGA 4BZ8A 3EW8A 3Q9EA 1ZZ1A
chains in the Genus database with same CATH superfamily
2VQQA 4ZUQA 4QA1A 3SFFA 1W22A 1D3VA 1P8SA 4IE1A 5EFBD 2AEBA 3E8QA 3F0RA 4RLAA 5IX0A 3C0ZA 1HQFA 2PLLA 3SL1A 3THHA 4A69A 4CQFA 3Q9FA 5ICNB 1TA1A 5G12A 3LHLA 1ZZ3A 4IXVA 1WOIA 3CEVA 4RN1A 4ZUPA 5RLAA 4QA5A 1T4PA 4QA0A 3Q9BA 3LP4A 3MZ4A 2A0MA 3MZ7A 4HWWA 3SJTA 4FCIA 3TF3A 4QA7A 5HJ9A 5EEFA 5DC6A 4LXZA 5EEKA 5G3WA 1WVAA 4RHIA 5DC7A 5THVA 5G0IA 3E9BA 4IXUA 1T69A 4IE2A 4ZUMA 5G0YA 1C3RA 2VQOA 5JI5A 3SKKA 4CEVA 5EFKB 3SL0A 4ZURA 2RLAA 5BWZA 5G10A 4Q3PA 4RN2A 2CEVA 5HJAA 2VCGA 4MYFA 4LY1A 3RLAA 3Q9CA 1HQHA 3NIQA 3EWFA 4QA3A 1TBLA 3MZ3A 5EFNA 1VKGA 4ZUOA 4Q3SA 4Q3VA 1ZZ0A 5G1BA 1R1OA 4I06A 4Q3UA 3SFHA 4MYKA 5THUA 1P8NA 4IE3A 5EENA 5G1CA 2VQWG 5D1DA 1HQXA 5G17A 4BKXB 3THEA 4RHMA 2ZAVA 4IU5A 3F80A 1CEVA 3TH7A 3LP7A 1XFKA 4Q41A 4GWCA 3ZNSA 4QA2A 3MAXA 2V5XA 3EZTA 3MMRA 1ZPGA 4RN0A 1TBJA 2EF4A 5EFHA 5EEIA 1C3SA 4BZ6A 2VQVA 4ITYA 3M1RA 5EF8A 3E6VA 3F07A 5G13A 5G1AA 5DC5A 5G11A 4Q3RC 5LI3A 2VQMA 1P8QA 4Q42A 5EF7A 4Q3RA 3NIPA 3ZNRA 4CBTA 5EFJD 5THTA 3MFWA 5IWGA 1WOGA 4GWDA 4RHJA 4RHQA 3C0YA 4IU1A 5EEMA 5G0JA 5A2SA 1PQ3A 4ZUNA 4CBYA 2PHOA 2EIVA 4MYNA 5CEVA 3C10A 1T67A 1T64A 2GH6A 3MZ6A 4BZ5A 2VQJA 5D1CA 4HZEA 3MFVA 1GQ7A 4BZ7A 1GQ6A 4GSMA 3RQDA 4IU0A 1HQ5A 4RHLA 1T5FA 1T4TA 4HXQA 4IU4A 5G0GA 5G0HA 1T5GA 3MENA 1HQGA 1P8MA 4QA4A 5FUEA 1T4RA 3MJLA 4GSVA 4Q3TA 4RHKA 3E8ZA 3GMZA 5FCWA 1C3PA 2V5WA 3THJA 3F06A 4BZ9A 5THSA 4MYLA 3GN0A 4Q3QA 3DJ8A 4QA6A 1TBHA 4MXRA 1P8PA 1T4SA 2PHAA 3EZPA 1ZPEA 3NIOA 5G0XA 1RLAA 4FCKA 4GSZA 1WVBA 1P8OA 3E6KA 4Q40A 5DC8A 3PZLA 4G3HA 5D1BA 5EFGA 4BZ8A 1P8RA 3EW8A 3KV2A 3Q9EA 2EF5A 1WOHA 4DZ4A 1ZZ1A
chains in the Genus database with same CATH topology
2VQQA 4ZUQA 4QA1A 3SFFA 1W22A 5EFBD 3F0RA 5IX0A 3C0ZA 4A69A 4CQFA 3Q9FA 5ICNB 5G12A 1ZZ3A 4RN1A 4ZUPA 4QA5A 4QA0A 3Q9BA 3MZ4A 3MZ7A 4QA7A 5EEFA 5DC6A 4LXZA 5EEKA 5G3WA 5DC7A 5THVA 5G0IA 5G0YA 4ZUMA 1T69A 5JI5A 1C3RA 2VQOA 5EFKB 4ZURA 5BWZA 5G10A 4RN2A 2VCGA 4LY1A 3Q9CA 4QA3A 3EWFA 3MZ3A 5EFNA 1VKGA 4ZUOA 1ZZ0A 5G1BA 3SFHA 5THUA 5EENA 5G1CA 2VQWG 5D1DA 5G17A 4BKXB 3ZNSA 4QA2A 3MAXA 2V5XA 3EZTA 4RN0A 5EFHA 5EEIA 1C3SA 4BZ6A 2VQVA 5EF8A 5G13A 3F07A 5G1AA 5DC5A 5G11A 5LI3A 2VQMA 5EF7A 3ZNRA 4CBTA 5EFJD 5THTA 5IWGA 3C0YA 5EEMA 5A2SA 5G0JA 4ZUNA 4CBYA 3C10A 1T67A 1T64A 2GH6A 3MZ6A 4BZ5A 2VQJA 5D1CA 4BZ7A 3RQDA 5G0GA 5G0HA 3MENA 5FUEA 4QA4A 5FCWA 1C3PA 2V5WA 3F06A 4BZ9A 5THSA 4QA6A 3EZPA 5G0XA 5DC8A 5D1BA 5EFGA 4BZ8A 3EW8A 3Q9EA 1ZZ1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VQQ A;  4ZUQ A;  4QA1 A;  3SFF A;  1W22 A;  5EFB D;  3F0R A;  5IX0 A;  3C0Z A;  4A69 A;  4CQF A;  3Q9F A;  5ICN B;  5G12 A;  1ZZ3 A;  4RN1 A;  4ZUP A;  4QA5 A;  4QA0 A;  3Q9B A;  3MZ4 A;  3MZ7 A;  4QA7 A;  5EEF A;  5DC6 A;  4LXZ A;  5EEK A;  5G3W A;  5DC7 A;  5THV A;  5G0I A;  5G0Y A;  4ZUM A;  1T69 A;  5JI5 A;  1C3R A;  2VQO A;  5EFK B;  4ZUR A;  5BWZ A;  5G10 A;  4RN2 A;  2VCG A;  4LY1 A;  3Q9C A;  4QA3 A;  3EWF A;  3MZ3 A;  5EFN A;  1VKG A;  4ZUO A;  1ZZ0 A;  5G1B A;  3SFH A;  5THU A;  5EEN A;  5G1C A;  2VQW G;  5D1D A;  5G17 A;  4BKX B;  3ZNS A;  4QA2 A;  3MAX A;  2V5X A;  3EZT A;  4RN0 A;  5EFH A;  5EEI A;  1C3S A;  4BZ6 A;  2VQV A;  5EF8 A;  5G13 A;  3F07 A;  5G1A A;  5DC5 A;  5G11 A;  5LI3 A;  2VQM A;  5EF7 A;  3ZNR A;  4CBT A;  5EFJ D;  5THT A;  5IWG A;  3C0Y A;  5EEM A;  5A2S A;  5G0J A;  4ZUN A;  4CBY A;  3C10 A;  1T67 A;  1T64 A;  2GH6 A;  3MZ6 A;  4BZ5 A;  2VQJ A;  5D1C A;  4BZ7 A;  3RQD A;  5G0G A;  5G0H A;  3MEN A;  5FUE A;  4QA4 A;  5FCW A;  1C3P A;  2V5W A;  3F06 A;  4BZ9 A;  5THS A;  4QA6 A;  3EZP A;  5G0X A;  5DC8 A;  5D1B A;  5EFG A;  4BZ8 A;  3EW8 A;  3Q9E A;  1ZZ1 A; 
#chains in the Genus database with same CATH topology
 2VQQ A;  4ZUQ A;  4QA1 A;  3SFF A;  1W22 A;  1D3V A;  1P8S A;  4IE1 A;  5EFB D;  2AEB A;  3E8Q A;  3F0R A;  4RLA A;  5IX0 A;  3C0Z A;  1HQF A;  2PLL A;  3SL1 A;  3THH A;  4A69 A;  4CQF A;  3Q9F A;  5ICN B;  1TA1 A;  5G12 A;  3LHL A;  1ZZ3 A;  4IXV A;  1WOI A;  3CEV A;  4RN1 A;  4ZUP A;  5RLA A;  4QA5 A;  1T4P A;  4QA0 A;  3Q9B A;  3LP4 A;  3MZ4 A;  2A0M A;  3MZ7 A;  4HWW A;  3SJT A;  4FCI A;  3TF3 A;  4QA7 A;  5HJ9 A;  5EEF A;  5DC6 A;  4LXZ A;  5EEK A;  5G3W A;  1WVA A;  4RHI A;  5DC7 A;  5THV A;  5G0I A;  3E9B A;  4IXU A;  1T69 A;  4IE2 A;  4ZUM A;  5G0Y A;  1C3R A;  2VQO A;  5JI5 A;  3SKK A;  4CEV A;  5EFK B;  3SL0 A;  4ZUR A;  2RLA A;  5BWZ A;  5G10 A;  4Q3P A;  4RN2 A;  2CEV A;  5HJA A;  2VCG A;  4MYF A;  4LY1 A;  3RLA A;  3Q9C A;  1HQH A;  3NIQ A;  3EWF A;  4QA3 A;  1TBL A;  3MZ3 A;  5EFN A;  1VKG A;  4ZUO A;  4Q3S A;  4Q3V A;  1ZZ0 A;  5G1B A;  1R1O A;  4I06 A;  4Q3U A;  3SFH A;  4MYK A;  5THU A;  1P8N A;  4IE3 A;  5EEN A;  5G1C A;  2VQW G;  5D1D A;  1HQX A;  5G17 A;  4BKX B;  3THE A;  4RHM A;  2ZAV A;  4IU5 A;  3F80 A;  1CEV A;  3TH7 A;  3LP7 A;  1XFK A;  4Q41 A;  4GWC A;  3ZNS A;  4QA2 A;  3MAX A;  2V5X A;  3EZT A;  3MMR A;  1ZPG A;  4RN0 A;  1TBJ A;  2EF4 A;  5EFH A;  5EEI A;  1C3S A;  4BZ6 A;  2VQV A;  4ITY A;  3M1R A;  5EF8 A;  3E6V A;  3F07 A;  5G13 A;  5G1A A;  5DC5 A;  5G11 A;  4Q3R C;  5LI3 A;  2VQM A;  1P8Q A;  4Q42 A;  5EF7 A;  4Q3R A;  3NIP A;  3ZNR A;  4CBT A;  5EFJ D;  5THT A;  3MFW A;  5IWG A;  1WOG A;  4GWD A;  4RHJ A;  4RHQ A;  3C0Y A;  4IU1 A;  5EEM A;  5G0J A;  5A2S A;  1PQ3 A;  4ZUN A;  4CBY A;  2PHO A;  2EIV A;  4MYN A;  5CEV A;  3C10 A;  1T67 A;  1T64 A;  2GH6 A;  3MZ6 A;  4BZ5 A;  2VQJ A;  5D1C A;  4HZE A;  3MFV A;  1GQ7 A;  4BZ7 A;  1GQ6 A;  4GSM A;  3RQD A;  4IU0 A;  1HQ5 A;  4RHL A;  1T5F A;  1T4T A;  4HXQ A;  4IU4 A;  5G0G A;  5G0H A;  1T5G A;  3MEN A;  1HQG A;  1P8M A;  4QA4 A;  5FUE A;  1T4R A;  3MJL A;  4GSV A;  4Q3T A;  4RHK A;  3E8Z A;  3GMZ A;  5FCW A;  1C3P A;  2V5W A;  3THJ A;  3F06 A;  4BZ9 A;  5THS A;  4MYL A;  3GN0 A;  4Q3Q A;  3DJ8 A;  4QA6 A;  1TBH A;  4MXR A;  1P8P A;  1T4S A;  2PHA A;  3EZP A;  1ZPE A;  3NIO A;  5G0X A;  1RLA A;  4FCK A;  4GSZ A;  1WVB A;  1P8O A;  3E6K A;  4Q40 A;  5DC8 A;  3PZL A;  4G3H A;  5D1B A;  5EFG A;  4BZ8 A;  1P8R A;  3EW8 A;  3KV2 A;  3Q9E A;  2EF5 A;  1WOH A;  4DZ4 A;  1ZZ1 A; 
#chains in the Genus database with same CATH homology
 2VQQ A;  4ZUQ A;  4QA1 A;  3SFF A;  1W22 A;  5EFB D;  3F0R A;  5IX0 A;  3C0Z A;  4A69 A;  4CQF A;  3Q9F A;  5ICN B;  5G12 A;  1ZZ3 A;  4RN1 A;  4ZUP A;  4QA5 A;  4QA0 A;  3Q9B A;  3MZ4 A;  3MZ7 A;  4QA7 A;  5EEF A;  5DC6 A;  4LXZ A;  5EEK A;  5G3W A;  5DC7 A;  5THV A;  5G0I A;  5G0Y A;  4ZUM A;  1T69 A;  5JI5 A;  1C3R A;  2VQO A;  5EFK B;  4ZUR A;  5BWZ A;  5G10 A;  4RN2 A;  2VCG A;  4LY1 A;  3Q9C A;  4QA3 A;  3EWF A;  3MZ3 A;  5EFN A;  1VKG A;  4ZUO A;  1ZZ0 A;  5G1B A;  3SFH A;  5THU A;  5EEN A;  5G1C A;  2VQW G;  5D1D A;  5G17 A;  4BKX B;  3ZNS A;  4QA2 A;  3MAX A;  2V5X A;  3EZT A;  4RN0 A;  5EFH A;  5EEI A;  1C3S A;  4BZ6 A;  2VQV A;  5EF8 A;  5G13 A;  3F07 A;  5G1A A;  5DC5 A;  5G11 A;  5LI3 A;  2VQM A;  5EF7 A;  3ZNR A;  4CBT A;  5EFJ D;  5THT A;  5IWG A;  3C0Y A;  5EEM A;  5A2S A;  5G0J A;  4ZUN A;  4CBY A;  3C10 A;  1T67 A;  1T64 A;  2GH6 A;  3MZ6 A;  4BZ5 A;  2VQJ A;  5D1C A;  4BZ7 A;  3RQD A;  5G0G A;  5G0H A;  3MEN A;  5FUE A;  4QA4 A;  5FCW A;  1C3P A;  2V5W A;  3F06 A;  4BZ9 A;  5THS A;  4QA6 A;  3EZP A;  5G0X A;  5DC8 A;  5D1B A;  5EFG A;  4BZ8 A;  3EW8 A;  3Q9E A;  1ZZ1 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.