5HJAA

Crystal structure of leishmania mexicana arginase in complex with inhibitor abhdp
Total Genus 117

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
117
sequence length
310
structure length
303
Chain Sequence
KKMSIVLAPFSGGQPHSGVELGPDYLLKQGLQQDMEKLGWDTRLERVFDGKVVEARKASDNGDRIGRVKRPRLTAECTEKIYKCVRRVAEQGRFPLTIGGDHSIALGTVAGVLSVHPDAGVIWVDAHADINTMSGTVSGNLHGCPLSILLGLDRENIPECFSWVPQVLKPNKIAYIGLRAVDDEEKKILHDLNIAAFSMHHVDRYGIDKVVSMAIEAVSPKGTEPVMVSYDVDTIDPLYVPATGTPVRGGLSFREALFLCERIAECGRLVALDVVECNPLLNDTISVGCAIARCMMGETLLYT
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (14-19)AH10 (265-278)AH4 (83-103)3H1 (31-33)TI1 (23-26)EMPTYAH1 (34-41)TI12 (290-293)S2 (53-58)S3 (76-77)AH3 (62-71)S6 (132-136)AH6 (156-162)TIV1 (76-79)TIV2 (80-83)AH5 (119-127)AH9 (219-230)S5 (106-110)3H2 (114-118)3H5 (171-173)TI3 (128-131)TI6 (173-176)S7 (185-190)TI7 (181-184)3H3 (153-155)TVIII1 (137-140)TI4 (144-147)TI5 (145-148)TIV3 (148-151)3H4 (166-168)TIV4 (163-166)S8 (208-210)AH8 (211-217)TIV11 (259-262)TIV10 (255-258)TI9 (231-234)TIV7 (233-236)3H6 (244-246)TI10 (248-251)S10 (281-287)S9 (238-243)TI11 (249-252)TIV9 (252-255)TIV8 (250-253)O1 (20-22)AH2 (43-50)TI2 (72-75)S4 (80-81)AH7 (195-204)AH11 (301-315)TIV6 (190-193)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Leishmania mexicana
publication title Crystal structures of Leishmania mexicana arginase complexed with alpha , alpha-disubstituted boronic amino-acid inhibitors.
pubmed doi rcsb
molecule keywords Arginase
total genus 117
structure length 303
sequence length 310
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2016-01-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 5hjaA00
3SL1A 4Q42A 4IU5A 1TA1A 3SKKA 1WOHA 3M1RA 4IXUA 3DJ8A 4Q3QA 3E8QA 1TBLA 1GQ6A 1P8SA 4FCKA 4IE1A 3E6KA 4G3HA 1WOGA 4Q3SA 1PQ3A 3GN0A 2AEBA 4Q3RA 4HWWA 1R1OA 3LP4A 4DZ4A 3THHA 4Q3PA 5RLAA 3LHLA 1T5GA 3MJLA 1TBHA 3NIOA 1P8QA 3PZLA 3CEVA 4GSZA 3SJTA 4GSMA 1T4RA 1T4TA 1RLAA 4RHKA 2PHOA 4GWCA 1P8RA 1TBJA 3TF3A 4IU0A 1P8PA 1T5FA 1GQ7A 4IE2A 4RHQA 3F80A 4Q3TA 4GWDA 1P8MA 4I06A 1D3VA 4RHIA 4HZEA 4HXQA 3TH7A 4MYNA 3MFWA 4MYKA 1P8NA 4RHJA 1ZPEA 3E8ZA 2EF5A 4RLAA 5HJAA 1HQXA 4Q40A 1ZPGA 3E6VA 4ITYA 4Q3VA 1T4SA 4Q3UA 3THEA 4Q3RC 4GSVA 4IXVA 1HQFA 4RHLA 4IU4A 1WOIA 1T4PA 1HQ5A 3MFVA 4MXRA 4MYFA 4IE3A 2ZAVA 4FCIA 1CEVA 2EIVA 4CEVA 1P8OA 1WVBA 5CEVA 3GMZA 3NIQA 4IU1A 4MYLA 3THJA 2EF4A 4Q41A 3NIPA 2PHAA 3E9BA 3SL0A 1HQGA 3MMRA 4RHMA 2A0MA 1HQHA 3RLAA 3KV2A 5HJ9A 3LP7A 2CEVA 1WVAA 1XFKA 2PLLA 2RLAA
chains in the Genus database with same CATH superfamily
4ZURA 2V5WA 5G17A 3SL1A 4Q42A 4QA1A 4IU5A 4QA3A 1TA1A 5G1AA 3SKKA 1WOHA 3M1RA 5THVA 4IXUA 3DJ8A 3F06A 4Q3QA 2VQWG 3RQDA 3E8QA 5G0XA 1TBLA 4RN2A 1GQ6A 1P8SA 4FCKA 4IE1A 3E6KA 4RN0A 4G3HA 1WOGA 4Q3SA 3ZNSA 4A69A 1PQ3A 3GN0A 2AEBA 4Q3RA 4CBYA 2GH6A 3MENA 4HWWA 5THUA 1R1OA 5G10A 2VQOA 5G12A 1T64A 3LP4A 3THHA 3MAXA 4DZ4A 2VQMA 4Q3PA 3LHLA 1T5GA 3MJLA 5RLAA 5EFGA 4BZ9A 5FUEA 1TBHA 3NIOA 3Q9BA 3C10A 1P8QA 5G0IA 3PZLA 3CEVA 4GSZA 5JI5A 5EFJD 3SJTA 4BZ5A 5EEIA 4GSMA 5EF8A 4ZUNA 1T4RA 3MZ6A 5ICNB 1T4TA 1RLAA 5EEFA 4RHKA 4ZUQA 2PHOA 1ZZ3A 1W22A 3Q9EA 5DC5A 2VQJA 4GWCA 5IX0A 5DC6A 5EFNA 4QA4A 3SFHA 5DC7A 3EZTA 1P8RA 1TBJA 3TF3A 5G1BA 4IU0A 4ZUOA 4CQFA 4ZUPA 5EF7A 4BKXB 1P8PA 1T5FA 3Q9FA 1VKGA 3SFFA 5G3WA 1ZZ1A 5G13A 2V5XA 3C0YA 5THSA 1GQ7A 4LXZA 4IE2A 4RHQA 3F80A 3Q9CA 5G11A 4Q3TA 4GWDA 1P8MA 4I06A 4BZ6A 5IWGA 1D3VA 4RHIA 4HZEA 5G0YA 4HXQA 3TH7A 4MYNA 5G0HA 5LI3A 3MZ3A 3MFWA 4MYKA 5G0JA 1P8NA 4RHJA 1ZPEA 2VCGA 5D1DA 5DC8A 2VQQA 5EFHA 3E8ZA 5G1CA 3EWFA 2EF5A 4RLAA 1C3RA 5HJAA 1HQXA 1C3SA 4Q40A 5EFKB 1ZZ0A 5D1CA 3F07A 3ZNRA 1T69A 1ZPGA 3E6VA 4ITYA 4QA5A 4Q3VA 1T4SA 5THTA 4Q3UA 5G0GA 3THEA 2VQVA 5BWZA 4Q3RC 3EZPA 4GSVA 4IXVA 1HQFA 4RHLA 4IU4A 1WOIA 1T4PA 1HQ5A 3MFVA 4MXRA 4MYFA 5EEMA 4QA6A 4IE3A 5EENA 2ZAVA 1C3PA 4FCIA 1CEVA 2EIVA 4LY1A 4CEVA 1P8OA 1WVBA 3EW8A 3F0RA 4QA7A 5CEVA 4BZ8A 3GMZA 5EEKA 3NIQA 4IU1A 4MYLA 5A2SA 4ZUMA 5FCWA 3MZ4A 3THJA 5EFBD 2EF4A 4Q41A 3NIPA 2PHAA 3E9BA 3SL0A 1HQGA 1T67A 3MMRA 4RHMA 2A0MA 1HQHA 4RN1A 3RLAA 4QA2A 3KV2A 5HJ9A 3LP7A 2CEVA 1WVAA 1XFKA 3MZ7A 5D1BA 3C0ZA 4CBTA 4QA0A 4BZ7A 2PLLA 2RLAA
chains in the Genus database with same CATH topology
3SL1A 4Q42A 4IU5A 1TA1A 3SKKA 1WOHA 3M1RA 4IXUA 3DJ8A 4Q3QA 3E8QA 1TBLA 1GQ6A 1P8SA 4FCKA 4IE1A 3E6KA 4G3HA 1WOGA 4Q3SA 1PQ3A 3GN0A 2AEBA 4Q3RA 4HWWA 1R1OA 3LP4A 4DZ4A 3THHA 4Q3PA 5RLAA 3LHLA 1T5GA 3MJLA 1TBHA 3NIOA 1P8QA 3PZLA 3CEVA 4GSZA 3SJTA 4GSMA 1T4RA 1T4TA 1RLAA 4RHKA 2PHOA 4GWCA 1P8RA 1TBJA 3TF3A 4IU0A 1P8PA 1T5FA 1GQ7A 4IE2A 4RHQA 3F80A 4Q3TA 4GWDA 1P8MA 4I06A 1D3VA 4RHIA 4HZEA 4HXQA 3TH7A 4MYNA 3MFWA 4MYKA 1P8NA 4RHJA 1ZPEA 3E8ZA 2EF5A 4RLAA 5HJAA 1HQXA 4Q40A 1ZPGA 3E6VA 4ITYA 4Q3VA 1T4SA 4Q3UA 3THEA 4Q3RC 4GSVA 4IXVA 1HQFA 4RHLA 4IU4A 1WOIA 1T4PA 1HQ5A 3MFVA 4MXRA 4MYFA 4IE3A 2ZAVA 4FCIA 1CEVA 2EIVA 4CEVA 1P8OA 1WVBA 5CEVA 3GMZA 3NIQA 4IU1A 4MYLA 3THJA 2EF4A 4Q41A 3NIPA 2PHAA 3E9BA 3SL0A 1HQGA 3MMRA 4RHMA 2A0MA 1HQHA 3RLAA 3KV2A 5HJ9A 3LP7A 2CEVA 1WVAA 1XFKA 2PLLA 2RLAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SL1 A;  4Q42 A;  4IU5 A;  1TA1 A;  3SKK A;  1WOH A;  3M1R A;  4IXU A;  3DJ8 A;  4Q3Q A;  3E8Q A;  1TBL A;  1GQ6 A;  1P8S A;  4FCK A;  4IE1 A;  3E6K A;  4G3H A;  1WOG A;  4Q3S A;  1PQ3 A;  3GN0 A;  2AEB A;  4Q3R A;  4HWW A;  1R1O A;  3LP4 A;  4DZ4 A;  3THH A;  4Q3P A;  5RLA A;  3LHL A;  1T5G A;  3MJL A;  1TBH A;  3NIO A;  1P8Q A;  3PZL A;  3CEV A;  4GSZ A;  3SJT A;  4GSM A;  1T4R A;  1T4T A;  1RLA A;  4RHK A;  2PHO A;  4GWC A;  1P8R A;  1TBJ A;  3TF3 A;  4IU0 A;  1P8P A;  1T5F A;  1GQ7 A;  4IE2 A;  4RHQ A;  3F80 A;  4Q3T A;  4GWD A;  1P8M A;  4I06 A;  1D3V A;  4RHI A;  4HZE A;  4HXQ A;  3TH7 A;  4MYN A;  3MFW A;  4MYK A;  1P8N A;  4RHJ A;  1ZPE A;  3E8Z A;  2EF5 A;  4RLA A;  5HJA A;  1HQX A;  4Q40 A;  1ZPG A;  3E6V A;  4ITY A;  4Q3V A;  1T4S A;  4Q3U A;  3THE A;  4Q3R C;  4GSV A;  4IXV A;  1HQF A;  4RHL A;  4IU4 A;  1WOI A;  1T4P A;  1HQ5 A;  3MFV A;  4MXR A;  4MYF A;  4IE3 A;  2ZAV A;  4FCI A;  1CEV A;  2EIV A;  4CEV A;  1P8O A;  1WVB A;  5CEV A;  3GMZ A;  3NIQ A;  4IU1 A;  4MYL A;  3THJ A;  2EF4 A;  4Q41 A;  3NIP A;  2PHA A;  3E9B A;  3SL0 A;  1HQG A;  3MMR A;  4RHM A;  2A0M A;  1HQH A;  3RLA A;  3KV2 A;  5HJ9 A;  3LP7 A;  2CEV A;  1WVA A;  1XFK A;  2PLL A;  2RLA A; 
#chains in the Genus database with same CATH topology
 4ZUR A;  2V5W A;  5G17 A;  3SL1 A;  4Q42 A;  4QA1 A;  4IU5 A;  4QA3 A;  1TA1 A;  5G1A A;  3SKK A;  1WOH A;  3M1R A;  5THV A;  4IXU A;  3DJ8 A;  3F06 A;  4Q3Q A;  2VQW G;  3RQD A;  3E8Q A;  5G0X A;  1TBL A;  4RN2 A;  1GQ6 A;  1P8S A;  4FCK A;  4IE1 A;  3E6K A;  4RN0 A;  4G3H A;  1WOG A;  4Q3S A;  3ZNS A;  4A69 A;  1PQ3 A;  3GN0 A;  2AEB A;  4Q3R A;  4CBY A;  2GH6 A;  3MEN A;  4HWW A;  5THU A;  1R1O A;  5G10 A;  2VQO A;  5G12 A;  1T64 A;  3LP4 A;  3THH A;  3MAX A;  4DZ4 A;  2VQM A;  4Q3P A;  3LHL A;  1T5G A;  3MJL A;  5RLA A;  5EFG A;  4BZ9 A;  5FUE A;  1TBH A;  3NIO A;  3Q9B A;  3C10 A;  1P8Q A;  5G0I A;  3PZL A;  3CEV A;  4GSZ A;  5JI5 A;  5EFJ D;  3SJT A;  4BZ5 A;  5EEI A;  4GSM A;  5EF8 A;  4ZUN A;  1T4R A;  3MZ6 A;  5ICN B;  1T4T A;  1RLA A;  5EEF A;  4RHK A;  4ZUQ A;  2PHO A;  1ZZ3 A;  1W22 A;  3Q9E A;  5DC5 A;  2VQJ A;  4GWC A;  5IX0 A;  5DC6 A;  5EFN A;  4QA4 A;  3SFH A;  5DC7 A;  3EZT A;  1P8R A;  1TBJ A;  3TF3 A;  5G1B A;  4IU0 A;  4ZUO A;  4CQF A;  4ZUP A;  5EF7 A;  4BKX B;  1P8P A;  1T5F A;  3Q9F A;  1VKG A;  3SFF A;  5G3W A;  1ZZ1 A;  5G13 A;  2V5X A;  3C0Y A;  5THS A;  1GQ7 A;  4LXZ A;  4IE2 A;  4RHQ A;  3F80 A;  3Q9C A;  5G11 A;  4Q3T A;  4GWD A;  1P8M A;  4I06 A;  4BZ6 A;  5IWG A;  1D3V A;  4RHI A;  4HZE A;  5G0Y A;  4HXQ A;  3TH7 A;  4MYN A;  5G0H A;  5LI3 A;  3MZ3 A;  3MFW A;  4MYK A;  5G0J A;  1P8N A;  4RHJ A;  1ZPE A;  2VCG A;  5D1D A;  5DC8 A;  2VQQ A;  5EFH A;  3E8Z A;  5G1C A;  3EWF A;  2EF5 A;  4RLA A;  1C3R A;  5HJA A;  1HQX A;  1C3S A;  4Q40 A;  5EFK B;  1ZZ0 A;  5D1C A;  3F07 A;  3ZNR A;  1T69 A;  1ZPG A;  3E6V A;  4ITY A;  4QA5 A;  4Q3V A;  1T4S A;  5THT A;  4Q3U A;  5G0G A;  3THE A;  2VQV A;  5BWZ A;  4Q3R C;  3EZP A;  4GSV A;  4IXV A;  1HQF A;  4RHL A;  4IU4 A;  1WOI A;  1T4P A;  1HQ5 A;  3MFV A;  4MXR A;  4MYF A;  5EEM A;  4QA6 A;  4IE3 A;  5EEN A;  2ZAV A;  1C3P A;  4FCI A;  1CEV A;  2EIV A;  4LY1 A;  4CEV A;  1P8O A;  1WVB A;  3EW8 A;  3F0R A;  4QA7 A;  5CEV A;  4BZ8 A;  3GMZ A;  5EEK A;  3NIQ A;  4IU1 A;  4MYL A;  5A2S A;  4ZUM A;  5FCW A;  3MZ4 A;  3THJ A;  5EFB D;  2EF4 A;  4Q41 A;  3NIP A;  2PHA A;  3E9B A;  3SL0 A;  1HQG A;  1T67 A;  3MMR A;  4RHM A;  2A0M A;  1HQH A;  4RN1 A;  3RLA A;  4QA2 A;  3KV2 A;  5HJ9 A;  3LP7 A;  2CEV A;  1WVA A;  1XFK A;  3MZ7 A;  5D1B A;  3C0Z A;  4CBT A;  4QA0 A;  4BZ7 A;  2PLL A;  2RLA A; 
#chains in the Genus database with same CATH homology
 3SL1 A;  4Q42 A;  4IU5 A;  1TA1 A;  3SKK A;  1WOH A;  3M1R A;  4IXU A;  3DJ8 A;  4Q3Q A;  3E8Q A;  1TBL A;  1GQ6 A;  1P8S A;  4FCK A;  4IE1 A;  3E6K A;  4G3H A;  1WOG A;  4Q3S A;  1PQ3 A;  3GN0 A;  2AEB A;  4Q3R A;  4HWW A;  1R1O A;  3LP4 A;  4DZ4 A;  3THH A;  4Q3P A;  5RLA A;  3LHL A;  1T5G A;  3MJL A;  1TBH A;  3NIO A;  1P8Q A;  3PZL A;  3CEV A;  4GSZ A;  3SJT A;  4GSM A;  1T4R A;  1T4T A;  1RLA A;  4RHK A;  2PHO A;  4GWC A;  1P8R A;  1TBJ A;  3TF3 A;  4IU0 A;  1P8P A;  1T5F A;  1GQ7 A;  4IE2 A;  4RHQ A;  3F80 A;  4Q3T A;  4GWD A;  1P8M A;  4I06 A;  1D3V A;  4RHI A;  4HZE A;  4HXQ A;  3TH7 A;  4MYN A;  3MFW A;  4MYK A;  1P8N A;  4RHJ A;  1ZPE A;  3E8Z A;  2EF5 A;  4RLA A;  5HJA A;  1HQX A;  4Q40 A;  1ZPG A;  3E6V A;  4ITY A;  4Q3V A;  1T4S A;  4Q3U A;  3THE A;  4Q3R C;  4GSV A;  4IXV A;  1HQF A;  4RHL A;  4IU4 A;  1WOI A;  1T4P A;  1HQ5 A;  3MFV A;  4MXR A;  4MYF A;  4IE3 A;  2ZAV A;  4FCI A;  1CEV A;  2EIV A;  4CEV A;  1P8O A;  1WVB A;  5CEV A;  3GMZ A;  3NIQ A;  4IU1 A;  4MYL A;  3THJ A;  2EF4 A;  4Q41 A;  3NIP A;  2PHA A;  3E9B A;  3SL0 A;  1HQG A;  3MMR A;  4RHM A;  2A0M A;  1HQH A;  3RLA A;  3KV2 A;  5HJ9 A;  3LP7 A;  2CEV A;  1WVA A;  1XFK A;  2PLL A;  2RLA A; 
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