5CEVA

Arginase from bacillus caldevelox, l-lysine complex
Total Genus 118

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
298
structure length
298
Chain Sequence
KPISIIGVPMDLGQTRRGVDMGPSAMRYAGVIERLERLHYDIEDLGDIPIGKAERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKHYERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKLM

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (43-48)O1 (9-11)S1 (4-8)TI1 (12-15)TIV1 (63-66)3H3 (138-140)TVIII3 (238-241)AH1 (23-30)TIV3 (277-280)AH2 (32-39)AH3 (68-88)TII1 (65-68)TII2 (156-159)S7 (220-226)AH4 (100-111)S8 (264-270)AH9 (203-216)TVIII1 (113-116)3H4 (166-168)S4 (116-121)AH10 (248-261)TI5 (133-136)AH5 (141-147)AH6 (152-156)TI'1 (157-160)S5 (169-174)S6 (191-194)AH8 (195-201)TI6 (231-234)O2 (236-238)TI7 (232-235)TVIII2 (233-236)AH11 (281-294)3H6 (274-276)3H2 (57-59)TI2 (62-65)3H5 (227-229)TI3 (129-132)3H1 (20-22)S3 (91-95)AH7 (179-188)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Bacillus caldovelox
publication title Crystal structures of Bacillus caldovelox arginase in complex with substrate and inhibitors reveal new insights into activation, inhibition and catalysis in the arginase superfamily.
pubmed doi rcsb
molecule keywords PROTEIN (ARGINASE)
total genus 118
structure length 298
sequence length 298
chains with identical sequence B, C, D, E, F
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 1999-03-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 5cevA00
1WOIA 1HQXA 1TBHA 2CEVA 3LP7A 3PZLA 4Q3TA 3SL1A 1TBLA 4GSZA 4RHJA 3RLAA 4Q3UA 1R1OA 2EIVA 3SKKA 3NIQA 1HQ5A 4HZEA 1GQ6A 4HWWA 4IU1A 4FCIA 3E8QA 1T4PA 5HJAA 1HQGA 4Q42A 3KV2A 1WOGA 4IE2A 4RHLA 2EF5A 4IE1A 1XFKA 4GWDA 1TA1A 1HQHA 4MYNA 4MYKA 4Q3RA 2EF4A 3MMRA 4IU0A 1P8OA 1T4TA 1D3VA 3DJ8A 4Q41A 3LHLA 4GWCA 1RLAA 2RLAA 4GSMA 1CEVA 1TBJA 3NIOA 3THHA 4MXRA 3NIPA 3TF3A 4G3HA 3THEA 4Q40A 3CEVA 3GMZA 1P8PA 4IXUA 4RHMA 4MYFA 4CEVA 3MFVA 1ZPEA 4Q3RC 5HJ9A 1P8MA 4DZ4A 1WOHA 4Q3SA 4FCKA 3SL0A 1GQ7A 4RLAA 1WVBA 1T5GA 3LP4A 4GSVA 4RHKA 3E9BA 4I06A 2PHOA 3TH7A 4IXVA 4HXQA 1P8QA 5RLAA 3MFWA 1PQ3A 2A0MA 4RHIA 3E8ZA 3E6VA 1T5FA 4IE3A 3THJA 4ITYA 1WVAA 2PLLA 3GN0A 1P8RA 2ZAVA 3M1RA 5CEVA 1T4SA 2PHAA 3MJLA 4IU5A 1P8SA 4MYLA 3F80A 4Q3QA 4Q3VA 1HQFA 4Q3PA 1P8NA 1T4RA 3SJTA 4IU4A 2AEBA 1ZPGA 3E6KA 4RHQA
chains in the Genus database with same CATH superfamily
1WOIA 4LXZA 3SFHA 5D1BA 5EFJD 1HQXA 5IX0A 1TBHA 3MENA 3MZ6A 4LY1A 4QA5A 5EEKA 4BZ6A 2CEVA 3LP7A 3PZLA 4Q3TA 3SL1A 5BWZA 5G0HA 1TBLA 4GSZA 4RHJA 3RLAA 4Q3UA 1R1OA 2EIVA 4QA0A 3Q9FA 3SKKA 3NIQA 4CQFA 4QA3A 5A2SA 2VQQA 1HQ5A 5G13A 4HZEA 1GQ6A 3Q9BA 4HWWA 4IU1A 1C3PA 4FCIA 3E8QA 1T4PA 4QA4A 2VQJA 5DC6A 5HJAA 3ZNRA 4A69A 3EWFA 3MAXA 1HQGA 4Q42A 3KV2A 3C0ZA 5EFKB 3EZPA 1WOGA 4IE2A 4RHLA 5FCWA 3ZNSA 2EF5A 4IE1A 5JI5A 1XFKA 5G10A 5EFGA 4GWDA 1TA1A 1HQHA 4MYNA 5D1CA 5G17A 4MYKA 4Q3RA 4ZUNA 2EF4A 3MMRA 1ZZ3A 3RQDA 4IU0A 1P8OA 1T4TA 1C3RA 4ZUMA 5DC7A 1D3VA 3DJ8A 4Q41A 5G0JA 2V5XA 5DC8A 3LHLA 4GWCA 5FUEA 1RLAA 3Q9CA 2RLAA 4GSMA 1CEVA 1ZZ0A 2V5WA 1TBJA 3NIOA 3THHA 4MXRA 5THTA 3NIPA 3TF3A 4G3HA 3MZ4A 4Q40A 2VQVA 3THEA 3CEVA 3GMZA 1P8PA 2VQMA 4IXUA 4RHMA 4MYFA 4BZ7A 4CEVA 3MFVA 1ZPEA 4Q3RC 4BZ5A 4RN0A 5HJ9A 2VCGA 1P8MA 4DZ4A 1WOHA 4Q3SA 4FCKA 3SL0A 1GQ7A 4QA7A 5IWGA 4BZ8A 4RLAA 1WVBA 4CBTA 5EENA 1T5GA 3LP4A 4GSVA 4QA1A 4ZUOA 4BZ9A 4RHKA 3F0RA 2GH6A 3E9BA 5EFNA 1VKGA 4I06A 2PHOA 5EF7A 5D1DA 3C10A 3TH7A 5G0YA 4IXVA 5EEFA 1T67A 5G12A 5G0XA 4HXQA 5G1AA 1P8QA 3F06A 5G11A 2VQOA 5RLAA 3MZ3A 3MFWA 1PQ3A 1C3SA 2A0MA 4RHIA 5G1CA 5G1BA 5EEMA 3E8ZA 3E6VA 4QA6A 1T64A 5G0IA 4RN1A 3C0YA 1T5FA 3EW8A 1W22A 4IE3A 5LI3A 3THJA 4ITYA 1WVAA 1T69A 2PLLA 3MZ7A 3GN0A 4ZUPA 4ZUQA 1P8RA 1ZZ1A 5EF8A 2ZAVA 5EFHA 3M1RA 4CBYA 5THUA 5ICNB 5CEVA 1T4SA 3F07A 4QA2A 2PHAA 3MJLA 4IU5A 1P8SA 4MYLA 3F80A 5THVA 4Q3QA 4Q3VA 4RN2A 1HQFA 5G0GA 4Q3PA 1P8NA 1T4RA 4BKXB 3Q9EA 5THSA 2VQWG 5EFBD 4IU4A 3SJTA 3SFFA 5EEIA 5G3WA 3EZTA 5DC5A 4ZURA 2AEBA 1ZPGA 3E6KA 4RHQA
chains in the Genus database with same CATH topology
1WOIA 1HQXA 1TBHA 2CEVA 3LP7A 3PZLA 4Q3TA 3SL1A 1TBLA 4GSZA 4RHJA 3RLAA 4Q3UA 1R1OA 2EIVA 3SKKA 3NIQA 1HQ5A 4HZEA 1GQ6A 4HWWA 4IU1A 4FCIA 3E8QA 1T4PA 5HJAA 1HQGA 4Q42A 3KV2A 1WOGA 4IE2A 4RHLA 2EF5A 4IE1A 1XFKA 4GWDA 1TA1A 1HQHA 4MYNA 4MYKA 4Q3RA 2EF4A 3MMRA 4IU0A 1P8OA 1T4TA 1D3VA 3DJ8A 4Q41A 3LHLA 4GWCA 1RLAA 2RLAA 4GSMA 1CEVA 1TBJA 3NIOA 3THHA 4MXRA 3NIPA 3TF3A 4G3HA 3THEA 4Q40A 3CEVA 3GMZA 1P8PA 4IXUA 4RHMA 4MYFA 4CEVA 3MFVA 1ZPEA 4Q3RC 5HJ9A 1P8MA 4DZ4A 1WOHA 4Q3SA 4FCKA 3SL0A 1GQ7A 4RLAA 1WVBA 1T5GA 3LP4A 4GSVA 4RHKA 3E9BA 4I06A 2PHOA 3TH7A 4IXVA 4HXQA 1P8QA 5RLAA 3MFWA 1PQ3A 2A0MA 4RHIA 3E8ZA 3E6VA 1T5FA 4IE3A 3THJA 4ITYA 1WVAA 2PLLA 3GN0A 1P8RA 2ZAVA 3M1RA 5CEVA 1T4SA 2PHAA 3MJLA 4IU5A 1P8SA 4MYLA 3F80A 4Q3QA 4Q3VA 1HQFA 4Q3PA 1P8NA 1T4RA 3SJTA 4IU4A 2AEBA 1ZPGA 3E6KA 4RHQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WOI A;  1HQX A;  1TBH A;  2CEV A;  3LP7 A;  3PZL A;  4Q3T A;  3SL1 A;  1TBL A;  4GSZ A;  4RHJ A;  3RLA A;  4Q3U A;  1R1O A;  2EIV A;  3SKK A;  3NIQ A;  1HQ5 A;  4HZE A;  1GQ6 A;  4HWW A;  4IU1 A;  4FCI A;  3E8Q A;  1T4P A;  5HJA A;  1HQG A;  4Q42 A;  3KV2 A;  1WOG A;  4IE2 A;  4RHL A;  2EF5 A;  4IE1 A;  1XFK A;  4GWD A;  1TA1 A;  1HQH A;  4MYN A;  4MYK A;  4Q3R A;  2EF4 A;  3MMR A;  4IU0 A;  1P8O A;  1T4T A;  1D3V A;  3DJ8 A;  4Q41 A;  3LHL A;  4GWC A;  1RLA A;  2RLA A;  4GSM A;  1CEV A;  1TBJ A;  3NIO A;  3THH A;  4MXR A;  3NIP A;  3TF3 A;  4G3H A;  3THE A;  4Q40 A;  3CEV A;  3GMZ A;  1P8P A;  4IXU A;  4RHM A;  4MYF A;  4CEV A;  3MFV A;  1ZPE A;  4Q3R C;  5HJ9 A;  1P8M A;  4DZ4 A;  1WOH A;  4Q3S A;  4FCK A;  3SL0 A;  1GQ7 A;  4RLA A;  1WVB A;  1T5G A;  3LP4 A;  4GSV A;  4RHK A;  3E9B A;  4I06 A;  2PHO A;  3TH7 A;  4IXV A;  4HXQ A;  1P8Q A;  5RLA A;  3MFW A;  1PQ3 A;  2A0M A;  4RHI A;  3E8Z A;  3E6V A;  1T5F A;  4IE3 A;  3THJ A;  4ITY A;  1WVA A;  2PLL A;  3GN0 A;  1P8R A;  2ZAV A;  3M1R A;  5CEV A;  1T4S A;  2PHA A;  3MJL A;  4IU5 A;  1P8S A;  4MYL A;  3F80 A;  4Q3Q A;  4Q3V A;  1HQF A;  4Q3P A;  1P8N A;  1T4R A;  3SJT A;  4IU4 A;  2AEB A;  1ZPG A;  3E6K A;  4RHQ A; 
#chains in the Genus database with same CATH topology
 1WOI A;  4LXZ A;  3SFH A;  5D1B A;  5EFJ D;  1HQX A;  5IX0 A;  1TBH A;  3MEN A;  3MZ6 A;  4LY1 A;  4QA5 A;  5EEK A;  4BZ6 A;  2CEV A;  3LP7 A;  3PZL A;  4Q3T A;  3SL1 A;  5BWZ A;  5G0H A;  1TBL A;  4GSZ A;  4RHJ A;  3RLA A;  4Q3U A;  1R1O A;  2EIV A;  4QA0 A;  3Q9F A;  3SKK A;  3NIQ A;  4CQF A;  4QA3 A;  5A2S A;  2VQQ A;  1HQ5 A;  5G13 A;  4HZE A;  1GQ6 A;  3Q9B A;  4HWW A;  4IU1 A;  1C3P A;  4FCI A;  3E8Q A;  1T4P A;  4QA4 A;  2VQJ A;  5DC6 A;  5HJA A;  3ZNR A;  4A69 A;  3EWF A;  3MAX A;  1HQG A;  4Q42 A;  3KV2 A;  3C0Z A;  5EFK B;  3EZP A;  1WOG A;  4IE2 A;  4RHL A;  5FCW A;  3ZNS A;  2EF5 A;  4IE1 A;  5JI5 A;  1XFK A;  5G10 A;  5EFG A;  4GWD A;  1TA1 A;  1HQH A;  4MYN A;  5D1C A;  5G17 A;  4MYK A;  4Q3R A;  4ZUN A;  2EF4 A;  3MMR A;  1ZZ3 A;  3RQD A;  4IU0 A;  1P8O A;  1T4T A;  1C3R A;  4ZUM A;  5DC7 A;  1D3V A;  3DJ8 A;  4Q41 A;  5G0J A;  2V5X A;  5DC8 A;  3LHL A;  4GWC A;  5FUE A;  1RLA A;  3Q9C A;  2RLA A;  4GSM A;  1CEV A;  1ZZ0 A;  2V5W A;  1TBJ A;  3NIO A;  3THH A;  4MXR A;  5THT A;  3NIP A;  3TF3 A;  4G3H A;  3MZ4 A;  4Q40 A;  2VQV A;  3THE A;  3CEV A;  3GMZ A;  1P8P A;  2VQM A;  4IXU A;  4RHM A;  4MYF A;  4BZ7 A;  4CEV A;  3MFV A;  1ZPE A;  4Q3R C;  4BZ5 A;  4RN0 A;  5HJ9 A;  2VCG A;  1P8M A;  4DZ4 A;  1WOH A;  4Q3S A;  4FCK A;  3SL0 A;  1GQ7 A;  4QA7 A;  5IWG A;  4BZ8 A;  4RLA A;  1WVB A;  4CBT A;  5EEN A;  1T5G A;  3LP4 A;  4GSV A;  4QA1 A;  4ZUO A;  4BZ9 A;  4RHK A;  3F0R A;  2GH6 A;  3E9B A;  5EFN A;  1VKG A;  4I06 A;  2PHO A;  5EF7 A;  5D1D A;  3C10 A;  3TH7 A;  5G0Y A;  4IXV A;  5EEF A;  1T67 A;  5G12 A;  5G0X A;  4HXQ A;  5G1A A;  1P8Q A;  3F06 A;  5G11 A;  2VQO A;  5RLA A;  3MZ3 A;  3MFW A;  1PQ3 A;  1C3S A;  2A0M A;  4RHI A;  5G1C A;  5G1B A;  5EEM A;  3E8Z A;  3E6V A;  4QA6 A;  1T64 A;  5G0I A;  4RN1 A;  3C0Y A;  1T5F A;  3EW8 A;  1W22 A;  4IE3 A;  5LI3 A;  3THJ A;  4ITY A;  1WVA A;  1T69 A;  2PLL A;  3MZ7 A;  3GN0 A;  4ZUP A;  4ZUQ A;  1P8R A;  1ZZ1 A;  5EF8 A;  2ZAV A;  5EFH A;  3M1R A;  4CBY A;  5THU A;  5ICN B;  5CEV A;  1T4S A;  3F07 A;  4QA2 A;  2PHA A;  3MJL A;  4IU5 A;  1P8S A;  4MYL A;  3F80 A;  5THV A;  4Q3Q A;  4Q3V A;  4RN2 A;  1HQF A;  5G0G A;  4Q3P A;  1P8N A;  1T4R A;  4BKX B;  3Q9E A;  5THS A;  2VQW G;  5EFB D;  4IU4 A;  3SJT A;  3SFF A;  5EEI A;  5G3W A;  3EZT A;  5DC5 A;  4ZUR A;  2AEB A;  1ZPG A;  3E6K A;  4RHQ A; 
#chains in the Genus database with same CATH homology
 1WOI A;  1HQX A;  1TBH A;  2CEV A;  3LP7 A;  3PZL A;  4Q3T A;  3SL1 A;  1TBL A;  4GSZ A;  4RHJ A;  3RLA A;  4Q3U A;  1R1O A;  2EIV A;  3SKK A;  3NIQ A;  1HQ5 A;  4HZE A;  1GQ6 A;  4HWW A;  4IU1 A;  4FCI A;  3E8Q A;  1T4P A;  5HJA A;  1HQG A;  4Q42 A;  3KV2 A;  1WOG A;  4IE2 A;  4RHL A;  2EF5 A;  4IE1 A;  1XFK A;  4GWD A;  1TA1 A;  1HQH A;  4MYN A;  4MYK A;  4Q3R A;  2EF4 A;  3MMR A;  4IU0 A;  1P8O A;  1T4T A;  1D3V A;  3DJ8 A;  4Q41 A;  3LHL A;  4GWC A;  1RLA A;  2RLA A;  4GSM A;  1CEV A;  1TBJ A;  3NIO A;  3THH A;  4MXR A;  3NIP A;  3TF3 A;  4G3H A;  3THE A;  4Q40 A;  3CEV A;  3GMZ A;  1P8P A;  4IXU A;  4RHM A;  4MYF A;  4CEV A;  3MFV A;  1ZPE A;  4Q3R C;  5HJ9 A;  1P8M A;  4DZ4 A;  1WOH A;  4Q3S A;  4FCK A;  3SL0 A;  1GQ7 A;  4RLA A;  1WVB A;  1T5G A;  3LP4 A;  4GSV A;  4RHK A;  3E9B A;  4I06 A;  2PHO A;  3TH7 A;  4IXV A;  4HXQ A;  1P8Q A;  5RLA A;  3MFW A;  1PQ3 A;  2A0M A;  4RHI A;  3E8Z A;  3E6V A;  1T5F A;  4IE3 A;  3THJ A;  4ITY A;  1WVA A;  2PLL A;  3GN0 A;  1P8R A;  2ZAV A;  3M1R A;  5CEV A;  1T4S A;  2PHA A;  3MJL A;  4IU5 A;  1P8S A;  4MYL A;  3F80 A;  4Q3Q A;  4Q3V A;  1HQF A;  4Q3P A;  1P8N A;  1T4R A;  3SJT A;  4IU4 A;  2AEB A;  1ZPG A;  3E6K A;  4RHQ A; 
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