1XLYA

X-ray structure of the rna-binding protein she2p
Total Genus 92

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
232
structure length
224
Chain Sequence
DIKVTPGTSELVEQILALLSRYLSSYIHVLNKFISHLRRVATLRFERTTLIKFVKKLRFYNDSVLSYNASEFINEGKNELDPEADSFDKVILPIASMFVKSVETFDLLNYYLTQSLQKEILSKTLNEDLTLTAESILAIDDTYNHFVKFSQWMIESLRIGSNLLDLEVVQFAIKSADEDNIFLQEILPVNSEEEFQTLSAAWHSILDGKLSALDEEFDVVATKW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV2 (82-85)AH3 (92-129)TI1 (45-48)AH2 (48-71)3H1 (74-77)TIV1 (81-84)TIV3 (85-88)3H3 (167-169)3H2 (132-134)AH4 (138-162)AH6 (205-236)AH1 (12-43)AH5 (172-180)TI3 (193-196)TIV4 (195-198)Updating...
connected with : NaN
publication title She2p is a novel RNA binding protein with a basic helical hairpin motif
pubmed doi rcsb
molecule keywords SHE2p
molecule tags Rna binding protein
source organism Saccharomyces cerevisiae
total genus 92
structure length 224
sequence length 232
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11435 She2p RNA binding protein She2p
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.200.20 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 She2 domain 1xlyA00
4WNLA 5M0IA 1XLYA 5M0JA
chains in the Genus database with same CATH superfamily
3RD8A 3NO9A 4HGVA 1C3CA 4FLCA 4MX2A 3OCFA 3E04A 2NYFA 1XWOA 2O7EA 2QGAB 1RE5A 4WNLA 2X75A 2HVGA 1U16A 1GK3A 3R6YA 4BABA 4CQ5A 1TJVA 2YIIA 1HY0A 3QBPA 1T6JA 2VD6A 4BAAA 1J3UA 1HY1A 1XLYA 2PTSA 3OCEA 1K62A 1W27A 5F92A 2O7FA 2FENA 2FELA 1T6PA 1FUQA 3BHGA 3KDZA 5EYTA 1Y2MA 3R6VA 4FFXA 4ADLA 5M0JA 2O78A 1DCNA 4EEIA 3RRPA 1TJ7A 4EFCA 1GK2A 1TJWA 4V2QA 1FUPA 1U15A 2NYNA 1GKMA 1KQ7A 5D6BA 4APBA 3C8TA 5F91A 3GTDA 5HW2A 1C3UA 4NSLA 2O7DA 1K7WA 4ADMA 2RJSA 2PFMA 3TV2A 1EB4A 2E9FA 1I0AA 1YFMA 2PTQA 2PTRA 4APAA 2OHYA 1B8FA 1YISA 3R6QA 4C5RA 1TJUA 2O6YA 2J91A 1DOFA 3KDYA 2FUSA 5M0IA 2QVEA 4NLEA 4C6GA 2RJRA 3UNVA 1YFEA 4C5SA 1Q5NA 3CZOA 2O7BA 1FURA 1AUWA 1FUOA 1GKJA 4C5UA 1VDKA 5EYVA 1JSWA 3GZHA 3NZ4A 4V2RA
chains in the Genus database with same CATH topology
4WNLA 5M0IA 1XLYA 5M0JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WNL A;  5M0I A;  1XLY A;  5M0J A; 
#chains in the Genus database with same CATH topology
 3RD8 A;  3NO9 A;  4HGV A;  1C3C A;  4FLC A;  4MX2 A;  3OCF A;  3E04 A;  2NYF A;  1XWO A;  2O7E A;  2QGA B;  1RE5 A;  4WNL A;  2X75 A;  2HVG A;  1U16 A;  1GK3 A;  3R6Y A;  4BAB A;  4CQ5 A;  1TJV A;  2YII A;  1HY0 A;  3QBP A;  1T6J A;  2VD6 A;  4BAA A;  1J3U A;  1HY1 A;  1XLY A;  2PTS A;  3OCE A;  1K62 A;  1W27 A;  5F92 A;  2O7F A;  2FEN A;  2FEL A;  1T6P A;  1FUQ A;  3BHG A;  3KDZ A;  5EYT A;  1Y2M A;  3R6V A;  4FFX A;  4ADL A;  5M0J A;  2O78 A;  1DCN A;  4EEI A;  3RRP A;  1TJ7 A;  4EFC A;  1GK2 A;  1TJW A;  4V2Q A;  1FUP A;  1U15 A;  2NYN A;  1GKM A;  1KQ7 A;  5D6B A;  4APB A;  3C8T A;  5F91 A;  3GTD A;  5HW2 A;  1C3U A;  4NSL A;  2O7D A;  1K7W A;  4ADM A;  2RJS A;  2PFM A;  3TV2 A;  1EB4 A;  2E9F A;  1I0A A;  1YFM A;  2PTQ A;  2PTR A;  4APA A;  2OHY A;  1B8F A;  1YIS A;  3R6Q A;  4C5R A;  1TJU A;  2O6Y A;  2J91 A;  1DOF A;  3KDY A;  2FUS A;  5M0I A;  2QVE A;  4NLE A;  4C6G A;  2RJR A;  3UNV A;  1YFE A;  4C5S A;  1Q5N A;  3CZO A;  2O7B A;  1FUR A;  1AUW A;  1FUO A;  1GKJ A;  4C5U A;  1VDK A;  5EYV A;  1JSW A;  3GZH A;  3NZ4 A;  4V2R A; 
#chains in the Genus database with same CATH homology
 4WNL A;  5M0I A;  1XLY A;  5M0J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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