1XLYA

X-ray structure of the rna-binding protein she2p
Total Genus 92

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
232
structure length
224
Chain Sequence
DIKVTPGTSELVEQILALLSRYLSSYIHVLNKFISHLRRVATLRFERTTLIKFVKKLRFYNDSVLSYNASEFINEGKNELDPEADSFDKVILPIASMFVKSVETFDLLNYYLTQSLQKEILSKTLNEDLTLTAESILAIDDTYNHFVKFSQWMIESLRIGSNLLDLEVVQFAIKSADEDNIFLQEILPVNSEEEFQTLSAAWHSILDGKLSALDEEFDVVATKW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV2 (82-85)AH3 (92-129)TI1 (45-48)AH2 (48-71)3H1 (74-77)TIV1 (81-84)TIV3 (85-88)3H3 (167-169)3H2 (132-134)AH4 (138-162)AH6 (205-236)AH1 (12-43)AH5 (172-180)TI3 (193-196)TIV4 (195-198)Updating...
connected with : NaN
publication title She2p is a novel RNA binding protein with a basic helical hairpin motif
pubmed doi rcsb
molecule keywords SHE2p
molecule tags Rna binding protein
source organism Saccharomyces cerevisiae
total genus 92
structure length 224
sequence length 232
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11435 She2p RNA binding protein She2p
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.200.20 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 She2 domain 1xlyA00
1XLYA 4WNLA 5M0JA 5M0IA
chains in the Genus database with same CATH superfamily
1FUPA 1FUOA 2QVEA 1EB4A 1TJVA 3NO9A 1JSWA 4APAA 2RJSA 1T6JA 2O7FA 4C5SA 1VDKA 2PTSA 5HW2A 2VD6A 2FENA 1U15A 3TV2A 1HY1A 1T6PA 2NYFA 1J3UA 1DCNA 1XLYA 4HGVA 4BAAA 4NLEA 2FELA 1GKMA 3UNVA 2O7EA 2QGAB 3R6QA 1GKJA 4FLCA 1HY0A 3KDYA 2E9FA 1GK3A 3GZHA 1YFEA 5D6BA 4MX2A 1FURA 1I0AA 2PFMA 4NSLA 4BABA 1TJWA 1W27A 2X75A 1Y2MA 2RJRA 5EYTA 1YFMA 1RE5A 4V2RA 2O6YA 2PTQA 2OHYA 3RD8A 2J91A 1C3CA 4ADLA 1GK2A 2YIIA 1XWOA 1AUWA 3E04A 1TJUA 3CZOA 1K62A 3KDZA 3GTDA 3BHGA 2O78A 4ADMA 5M0JA 1Q5NA 2PTRA 2O7DA 3QBPA 4CQ5A 1C3UA 2HVGA 4C5RA 4APBA 4WNLA 3RRPA 3R6YA 3OCEA 1B8FA 1DOFA 3C8TA 4C5UA 4EEIA 4V2QA 5M0IA 3R6VA 2FUSA 1YISA 1U16A 4EFCA 4C6GA 1TJ7A 1KQ7A 1FUQA 1K7WA 5EYVA 5F91A 3NZ4A 2O7BA 2NYNA 4FFXA 3OCFA 5F92A
chains in the Genus database with same CATH topology
1XLYA 4WNLA 5M0JA 5M0IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XLY A;  4WNL A;  5M0J A;  5M0I A; 
#chains in the Genus database with same CATH topology
 1FUP A;  1FUO A;  2QVE A;  1EB4 A;  1TJV A;  3NO9 A;  1JSW A;  4APA A;  2RJS A;  1T6J A;  2O7F A;  4C5S A;  1VDK A;  2PTS A;  5HW2 A;  2VD6 A;  2FEN A;  1U15 A;  3TV2 A;  1HY1 A;  1T6P A;  2NYF A;  1J3U A;  1DCN A;  1XLY A;  4HGV A;  4BAA A;  4NLE A;  2FEL A;  1GKM A;  3UNV A;  2O7E A;  2QGA B;  3R6Q A;  1GKJ A;  4FLC A;  1HY0 A;  3KDY A;  2E9F A;  1GK3 A;  3GZH A;  1YFE A;  5D6B A;  4MX2 A;  1FUR A;  1I0A A;  2PFM A;  4NSL A;  4BAB A;  1TJW A;  1W27 A;  2X75 A;  1Y2M A;  2RJR A;  5EYT A;  1YFM A;  1RE5 A;  4V2R A;  2O6Y A;  2PTQ A;  2OHY A;  3RD8 A;  2J91 A;  1C3C A;  4ADL A;  1GK2 A;  2YII A;  1XWO A;  1AUW A;  3E04 A;  1TJU A;  3CZO A;  1K62 A;  3KDZ A;  3GTD A;  3BHG A;  2O78 A;  4ADM A;  5M0J A;  1Q5N A;  2PTR A;  2O7D A;  3QBP A;  4CQ5 A;  1C3U A;  2HVG A;  4C5R A;  4APB A;  4WNL A;  3RRP A;  3R6Y A;  3OCE A;  1B8F A;  1DOF A;  3C8T A;  4C5U A;  4EEI A;  4V2Q A;  5M0I A;  3R6V A;  2FUS A;  1YIS A;  1U16 A;  4EFC A;  4C6G A;  1TJ7 A;  1KQ7 A;  1FUQ A;  1K7W A;  5EYV A;  5F91 A;  3NZ4 A;  2O7B A;  2NYN A;  4FFX A;  3OCF A;  5F92 A; 
#chains in the Genus database with same CATH homology
 1XLY A;  4WNL A;  5M0J A;  5M0I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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