3R6YA

Crystal structure of chymotrypsin-treated aspartase from bacillus sp. ym55-1
Total Genus 137
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
137
sequence length
390
structure length
390
Chain Sequence
VRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKAN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Aspartase
publication title Structural basis for the catalytic mechanism of aspartate ammonia lyase.
pubmed doi rcsb
source organism Bacillus sp.
molecule tags Lyase
total genus 137
structure length 390
sequence length 390
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 2011-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3r6yA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3r6yA02
3KDZA 2QGAB 4C6GA 2YIIA 4MX2A 4BABA 3OCEA 4APBA 2NYFA 4EEIA 2QVEA 3UNVA 1J3UA 3R6QA 4C5UA 1FURA 1C3UA 1JSWA 1FUQA 3NO9A 2VD6A 1Q5NA 3E04A 1TJWA 2HVGA 1Y2MA 3CZOA 2PTQA 4NLEA 5D6BA 1K7WA 5F92A 4V2RA 1U16A 3NZ4A 3R6YA 3TV2A 5EYTA 1T6JA 2RJRA 4C5SA 1FUPA 3KDYA 4C5RA 4HGVA 1U15A 2O7EA 4FFXA 1KQ7A 1EB4A 1GKMA 2PTRA 1GKJA 2X75A 3BHGA 2O7BA 2RJSA 3GTDA 2FUSA 4V2QA 1FUOA 3RD8A 1AUWA 1GK2A 1RE5A 1YFMA 2O7DA 1B8FA 1DCNA 4CQ5A 1T6PA 1XWOA 1YISA 4NSLA 1C3CA 4ADLA 2O78A 5HW2A 3GZHA 4EFCA 2PTSA 2E9FA 1K62A 3RRPA 3OCFA 1W27A 1DOFA 1TJ7A 1VDKA 3QBPA 2NYNA 2J91A 5F91A 1HY0A 1YFEA 1I0AA 2O7FA 4APAA 4FLCA 1TJUA 4BAAA 2OHYA 3C8TA 4ADMA 2PFMA 1TJVA 5EYVA 1HY1A 3R6VA 2O6YA 1GK3A
chains in the Genus database with same CATH superfamily
3KDZA 2QGAB 4C6GA 2YIIA 4MX2A 4BABA 3OCEA 4APBA 2NYFA 4EEIA 2QVEA 3UNVA 1J3UA 1XL7A 5M0IA 3R6QA 4C5UA 1FURA 1C3UA 1JSWA 1XL8A 1FUQA 3NO9A 2VD6A 1Q5NA 3E04A 1TJWA 2HVGA 1Y2MA 3CZOA 2PTQA 3CRVA 4NLEA 5D6BA 1K7WA 4A15A 5F92A 4V2RA 1U16A 3NZ4A 3R6YA 3TV2A 5EYTA 1T6JA 2RJRA 4C5SA 1FUPA 3KDYA 4C5RA 4HGVA 1U15A 2O7EA 4FFXA 1KQ7A 1EB4A 1GKMA 2PTRA 1GKJA 2X75A 3BHGA 1XLYA 2O7BA 2RJSA 3GTDA 2FUSA 5H8WA 4V2QA 2VSFA 1FUOA 3RD8A 1AUWA 1GK2A 1RE5A 1YFMA 2O7DA 1B8FA 1DCNA 4CQ5A 1T6PA 1XWOA 1YISA 4NSLA 2FELA 1C3CA 4ADLA 2O78A 5HW2A 3GZHA 4EFCA 2PTSA 2E9FA 1K62A 3RRPA 3OCFA 2VL7A 1W27A 1DOFA 1TJ7A 1VDKA 3QBPA 2NYNA 1XMCA 2J91A 5F91A 3CRW1 1HY0A 1XMDA 1YFEA 1I0AA 2O7FA 5M0JA 4APAA 4FLCA 1TJUA 4BAAA 2OHYA 3C8TA 4ADMA 4WNLA 2PFMA 1TJVA 5EYVA 2FENA 1HY1A 3R6VA 2O6YA 1GK3A
chains in the Genus database with same CATH topology
3KDZA 2QGAB 4C6GA 2YIIA 4MX2A 4BABA 3OCEA 4APBA 2NYFA 4EEIA 2QVEA 3UNVA 1J3UA 3R6QA 4C5UA 1FURA 1C3UA 1JSWA 1FUQA 3NO9A 2VD6A 1Q5NA 3E04A 1TJWA 2HVGA 1Y2MA 3CZOA 2PTQA 4NLEA 5D6BA 1K7WA 5F92A 4V2RA 1U16A 3NZ4A 3R6YA 3TV2A 5EYTA 1T6JA 2RJRA 4C5SA 1FUPA 3KDYA 4C5RA 4HGVA 1U15A 2O7EA 4FFXA 1KQ7A 1EB4A 1GKMA 2PTRA 1GKJA 2X75A 3BHGA 2O7BA 2RJSA 3GTDA 2FUSA 4V2QA 1FUOA 3RD8A 1AUWA 1GK2A 1RE5A 1YFMA 2O7DA 1B8FA 1DCNA 4CQ5A 1T6PA 1XWOA 1YISA 4NSLA 1C3CA 4ADLA 2O78A 5HW2A 3GZHA 4EFCA 2PTSA 2E9FA 1K62A 3RRPA 3OCFA 1W27A 1DOFA 1TJ7A 1VDKA 3QBPA 2NYNA 2J91A 5F91A 1HY0A 1YFEA 1I0AA 2O7FA 4APAA 4FLCA 1TJUA 4BAAA 2OHYA 3C8TA 4ADMA 2PFMA 1TJVA 5EYVA 1HY1A 3R6VA 2O6YA 1GK3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KDZ A;  2QGA B;  4C6G A;  2YII A;  4MX2 A;  4BAB A;  3OCE A;  4APB A;  2NYF A;  4EEI A;  2QVE A;  3UNV A;  1J3U A;  3R6Q A;  4C5U A;  1FUR A;  1C3U A;  1JSW A;  1FUQ A;  3NO9 A;  2VD6 A;  1Q5N A;  3E04 A;  1TJW A;  2HVG A;  1Y2M A;  3CZO A;  2PTQ A;  4NLE A;  5D6B A;  1K7W A;  5F92 A;  4V2R A;  1U16 A;  3NZ4 A;  3R6Y A;  3TV2 A;  5EYT A;  1T6J A;  2RJR A;  4C5S A;  1FUP A;  3KDY A;  4C5R A;  4HGV A;  1U15 A;  2O7E A;  4FFX A;  1KQ7 A;  1EB4 A;  1GKM A;  2PTR A;  1GKJ A;  2X75 A;  3BHG A;  2O7B A;  2RJS A;  3GTD A;  2FUS A;  4V2Q A;  1FUO A;  3RD8 A;  1AUW A;  1GK2 A;  1RE5 A;  1YFM A;  2O7D A;  1B8F A;  1DCN A;  4CQ5 A;  1T6P A;  1XWO A;  1YIS A;  4NSL A;  1C3C A;  4ADL A;  2O78 A;  5HW2 A;  3GZH A;  4EFC A;  2PTS A;  2E9F A;  1K62 A;  3RRP A;  3OCF A;  1W27 A;  1DOF A;  1TJ7 A;  1VDK A;  3QBP A;  2NYN A;  2J91 A;  5F91 A;  1HY0 A;  1YFE A;  1I0A A;  2O7F A;  4APA A;  4FLC A;  1TJU A;  4BAA A;  2OHY A;  3C8T A;  4ADM A;  2PFM A;  1TJV A;  5EYV A;  1HY1 A;  3R6V A;  2O6Y A;  1GK3 A; 
#chains in the Genus database with same CATH topology
 3KDZ A;  2QGA B;  4C6G A;  2YII A;  4MX2 A;  4BAB A;  3OCE A;  4APB A;  2NYF A;  4EEI A;  2QVE A;  3UNV A;  1J3U A;  1XL7 A;  5M0I A;  3R6Q A;  4C5U A;  1FUR A;  1C3U A;  1JSW A;  1XL8 A;  1FUQ A;  3NO9 A;  2VD6 A;  1Q5N A;  3E04 A;  1TJW A;  2HVG A;  1Y2M A;  3CZO A;  2PTQ A;  3CRV A;  4NLE A;  5D6B A;  1K7W A;  4A15 A;  5F92 A;  4V2R A;  1U16 A;  3NZ4 A;  3R6Y A;  3TV2 A;  5EYT A;  1T6J A;  2RJR A;  4C5S A;  1FUP A;  3KDY A;  4C5R A;  4HGV A;  1U15 A;  2O7E A;  4FFX A;  1KQ7 A;  1EB4 A;  1GKM A;  2PTR A;  1GKJ A;  2X75 A;  3BHG A;  1XLY A;  2O7B A;  2RJS A;  3GTD A;  2FUS A;  5H8W A;  4V2Q A;  2VSF A;  1FUO A;  3RD8 A;  1AUW A;  1GK2 A;  1RE5 A;  1YFM A;  2O7D A;  1B8F A;  1DCN A;  4CQ5 A;  1T6P A;  1XWO A;  1YIS A;  4NSL A;  2FEL A;  1C3C A;  4ADL A;  2O78 A;  5HW2 A;  3GZH A;  4EFC A;  2PTS A;  2E9F A;  1K62 A;  3RRP A;  3OCF A;  2VL7 A;  1W27 A;  1DOF A;  1TJ7 A;  1VDK A;  3QBP A;  2NYN A;  1XMC A;  2J91 A;  5F91 A;  3CRW 1;  1HY0 A;  1XMD A;  1YFE A;  1I0A A;  2O7F A;  5M0J A;  4APA A;  4FLC A;  1TJU A;  4BAA A;  2OHY A;  3C8T A;  4ADM A;  4WNL A;  2PFM A;  1TJV A;  5EYV A;  2FEN A;  1HY1 A;  3R6V A;  2O6Y A;  1GK3 A; 
#chains in the Genus database with same CATH homology
 3KDZ A;  2QGA B;  4C6G A;  2YII A;  4MX2 A;  4BAB A;  3OCE A;  4APB A;  2NYF A;  4EEI A;  2QVE A;  3UNV A;  1J3U A;  3R6Q A;  4C5U A;  1FUR A;  1C3U A;  1JSW A;  1FUQ A;  3NO9 A;  2VD6 A;  1Q5N A;  3E04 A;  1TJW A;  2HVG A;  1Y2M A;  3CZO A;  2PTQ A;  4NLE A;  5D6B A;  1K7W A;  5F92 A;  4V2R A;  1U16 A;  3NZ4 A;  3R6Y A;  3TV2 A;  5EYT A;  1T6J A;  2RJR A;  4C5S A;  1FUP A;  3KDY A;  4C5R A;  4HGV A;  1U15 A;  2O7E A;  4FFX A;  1KQ7 A;  1EB4 A;  1GKM A;  2PTR A;  1GKJ A;  2X75 A;  3BHG A;  2O7B A;  2RJS A;  3GTD A;  2FUS A;  4V2Q A;  1FUO A;  3RD8 A;  1AUW A;  1GK2 A;  1RE5 A;  1YFM A;  2O7D A;  1B8F A;  1DCN A;  4CQ5 A;  1T6P A;  1XWO A;  1YIS A;  4NSL A;  1C3C A;  4ADL A;  2O78 A;  5HW2 A;  3GZH A;  4EFC A;  2PTS A;  2E9F A;  1K62 A;  3RRP A;  3OCF A;  1W27 A;  1DOF A;  1TJ7 A;  1VDK A;  3QBP A;  2NYN A;  2J91 A;  5F91 A;  1HY0 A;  1YFE A;  1I0A A;  2O7F A;  4APA A;  4FLC A;  1TJU A;  4BAA A;  2OHY A;  3C8T A;  4ADM A;  2PFM A;  1TJV A;  5EYV A;  1HY1 A;  3R6V A;  2O6Y A;  1GK3 A; 
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