3R6YA

Crystal structure of chymotrypsin-treated aspartase from bacillus sp. ym55-1
Total Genus 137
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
137
sequence length
390
structure length
390
Chain Sequence
VRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKAN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for the catalytic mechanism of aspartate ammonia lyase.
pubmed doi rcsb
source organism Bacillus sp.
molecule tags Lyase
molecule keywords Aspartase
total genus 137
structure length 390
sequence length 390
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 2011-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3r6yA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3r6yA02
1DOFA 2O78A 4HGVA 4EFCA 2NYFA 1JSWA 3R6VA 1TJWA 3CZOA 4NLEA 1FUQA 3RD8A 4APAA 3TV2A 2PTRA 1T6JA 4ADMA 1GKMA 1DCNA 1I0AA 1HY1A 1FUOA 2PTSA 5F92A 1TJ7A 4C5RA 2RJRA 1B8FA 1Y2MA 2O7FA 3OCEA 4V2RA 4MX2A 3KDZA 5EYVA 2X75A 3RRPA 4APBA 2O7DA 3GTDA 1C3UA 1FUPA 1VDKA 1K62A 4C5SA 3E04A 1YISA 1KQ7A 3BHGA 2J91A 1YFEA 3NZ4A 1U16A 1K7WA 5F91A 4FFXA 2PTQA 4FLCA 5D6BA 2PFMA 4ADLA 4BABA 1FURA 3R6YA 4V2QA 2NYNA 4C5UA 1T6PA 1J3UA 3OCFA 3C8TA 3QBPA 1HY0A 1U15A 1TJVA 1W27A 2O6YA 1XWOA 1GK2A 4C6GA 2RJSA 2VD6A 1YFMA 2OHYA 1RE5A 1AUWA 2E9FA 3UNVA 3R6QA 2O7BA 2YIIA 4BAAA 3GZHA 3KDYA 2QGAB 4CQ5A 4EEIA 2O7EA 3NO9A 1TJUA 2FUSA 5HW2A 1C3CA 5EYTA 2QVEA 2HVGA 1Q5NA 4NSLA 1GK3A 1GKJA 1EB4A
chains in the Genus database with same CATH superfamily
1DOFA 5H8WA 2O78A 4HGVA 4EFCA 2NYFA 1JSWA 3R6VA 1TJWA 3CZOA 4NLEA 5M0JA 1FUQA 3RD8A 4APAA 1XL7A 3TV2A 2PTRA 1T6JA 4ADMA 1GKMA 2VSFA 1DCNA 1I0AA 1HY1A 1FUOA 2PTSA 5F92A 1TJ7A 4C5RA 2RJRA 4A15A 1B8FA 1Y2MA 2O7FA 1XL8A 5M0IA 3OCEA 4V2RA 4MX2A 3KDZA 5EYVA 2X75A 3RRPA 4APBA 2O7DA 3GTDA 1C3UA 1FUPA 1VDKA 1K62A 4C5SA 3E04A 1YISA 1KQ7A 3BHGA 2J91A 1YFEA 3NZ4A 1U16A 1K7WA 3CRVA 5F91A 4FFXA 2PTQA 4FLCA 5D6BA 2FELA 2PFMA 3CRW1 4ADLA 4BABA 1FURA 3R6YA 4V2QA 2NYNA 4C5UA 1T6PA 1J3UA 3OCFA 3C8TA 3QBPA 1HY0A 1XMDA 1XLYA 1U15A 1TJVA 1W27A 2O6YA 1XWOA 4WNLA 1GK2A 4C6GA 1XMCA 2RJSA 2VD6A 1YFMA 2OHYA 1RE5A 1AUWA 2E9FA 3UNVA 3R6QA 2FENA 2O7BA 2YIIA 4BAAA 3GZHA 3KDYA 2QGAB 4CQ5A 4EEIA 2O7EA 3NO9A 1TJUA 2FUSA 5HW2A 1C3CA 2VL7A 5EYTA 2QVEA 2HVGA 1Q5NA 4NSLA 1GK3A 1GKJA 1EB4A
chains in the Genus database with same CATH topology
1DOFA 2O78A 4HGVA 4EFCA 2NYFA 1JSWA 3R6VA 1TJWA 3CZOA 4NLEA 1FUQA 3RD8A 4APAA 3TV2A 2PTRA 1T6JA 4ADMA 1GKMA 1DCNA 1I0AA 1HY1A 1FUOA 2PTSA 5F92A 1TJ7A 4C5RA 2RJRA 1B8FA 1Y2MA 2O7FA 3OCEA 4V2RA 4MX2A 3KDZA 5EYVA 2X75A 3RRPA 4APBA 2O7DA 3GTDA 1C3UA 1FUPA 1VDKA 1K62A 4C5SA 3E04A 1YISA 1KQ7A 3BHGA 2J91A 1YFEA 3NZ4A 1U16A 1K7WA 5F91A 4FFXA 2PTQA 4FLCA 5D6BA 2PFMA 4ADLA 4BABA 1FURA 3R6YA 4V2QA 2NYNA 4C5UA 1T6PA 1J3UA 3OCFA 3C8TA 3QBPA 1HY0A 1U15A 1TJVA 1W27A 2O6YA 1XWOA 1GK2A 4C6GA 2RJSA 2VD6A 1YFMA 2OHYA 1RE5A 1AUWA 2E9FA 3UNVA 3R6QA 2O7BA 2YIIA 4BAAA 3GZHA 3KDYA 2QGAB 4CQ5A 4EEIA 2O7EA 3NO9A 1TJUA 2FUSA 5HW2A 1C3CA 5EYTA 2QVEA 2HVGA 1Q5NA 4NSLA 1GK3A 1GKJA 1EB4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DOF A;  2O78 A;  4HGV A;  4EFC A;  2NYF A;  1JSW A;  3R6V A;  1TJW A;  3CZO A;  4NLE A;  1FUQ A;  3RD8 A;  4APA A;  3TV2 A;  2PTR A;  1T6J A;  4ADM A;  1GKM A;  1DCN A;  1I0A A;  1HY1 A;  1FUO A;  2PTS A;  5F92 A;  1TJ7 A;  4C5R A;  2RJR A;  1B8F A;  1Y2M A;  2O7F A;  3OCE A;  4V2R A;  4MX2 A;  3KDZ A;  5EYV A;  2X75 A;  3RRP A;  4APB A;  2O7D A;  3GTD A;  1C3U A;  1FUP A;  1VDK A;  1K62 A;  4C5S A;  3E04 A;  1YIS A;  1KQ7 A;  3BHG A;  2J91 A;  1YFE A;  3NZ4 A;  1U16 A;  1K7W A;  5F91 A;  4FFX A;  2PTQ A;  4FLC A;  5D6B A;  2PFM A;  4ADL A;  4BAB A;  1FUR A;  3R6Y A;  4V2Q A;  2NYN A;  4C5U A;  1T6P A;  1J3U A;  3OCF A;  3C8T A;  3QBP A;  1HY0 A;  1U15 A;  1TJV A;  1W27 A;  2O6Y A;  1XWO A;  1GK2 A;  4C6G A;  2RJS A;  2VD6 A;  1YFM A;  2OHY A;  1RE5 A;  1AUW A;  2E9F A;  3UNV A;  3R6Q A;  2O7B A;  2YII A;  4BAA A;  3GZH A;  3KDY A;  2QGA B;  4CQ5 A;  4EEI A;  2O7E A;  3NO9 A;  1TJU A;  2FUS A;  5HW2 A;  1C3C A;  5EYT A;  2QVE A;  2HVG A;  1Q5N A;  4NSL A;  1GK3 A;  1GKJ A;  1EB4 A; 
#chains in the Genus database with same CATH topology
 1DOF A;  5H8W A;  2O78 A;  4HGV A;  4EFC A;  2NYF A;  1JSW A;  3R6V A;  1TJW A;  3CZO A;  4NLE A;  5M0J A;  1FUQ A;  3RD8 A;  4APA A;  1XL7 A;  3TV2 A;  2PTR A;  1T6J A;  4ADM A;  1GKM A;  2VSF A;  1DCN A;  1I0A A;  1HY1 A;  1FUO A;  2PTS A;  5F92 A;  1TJ7 A;  4C5R A;  2RJR A;  4A15 A;  1B8F A;  1Y2M A;  2O7F A;  1XL8 A;  5M0I A;  3OCE A;  4V2R A;  4MX2 A;  3KDZ A;  5EYV A;  2X75 A;  3RRP A;  4APB A;  2O7D A;  3GTD A;  1C3U A;  1FUP A;  1VDK A;  1K62 A;  4C5S A;  3E04 A;  1YIS A;  1KQ7 A;  3BHG A;  2J91 A;  1YFE A;  3NZ4 A;  1U16 A;  1K7W A;  3CRV A;  5F91 A;  4FFX A;  2PTQ A;  4FLC A;  5D6B A;  2FEL A;  2PFM A;  3CRW 1;  4ADL A;  4BAB A;  1FUR A;  3R6Y A;  4V2Q A;  2NYN A;  4C5U A;  1T6P A;  1J3U A;  3OCF A;  3C8T A;  3QBP A;  1HY0 A;  1XMD A;  1XLY A;  1U15 A;  1TJV A;  1W27 A;  2O6Y A;  1XWO A;  4WNL A;  1GK2 A;  4C6G A;  1XMC A;  2RJS A;  2VD6 A;  1YFM A;  2OHY A;  1RE5 A;  1AUW A;  2E9F A;  3UNV A;  3R6Q A;  2FEN A;  2O7B A;  2YII A;  4BAA A;  3GZH A;  3KDY A;  2QGA B;  4CQ5 A;  4EEI A;  2O7E A;  3NO9 A;  1TJU A;  2FUS A;  5HW2 A;  1C3C A;  2VL7 A;  5EYT A;  2QVE A;  2HVG A;  1Q5N A;  4NSL A;  1GK3 A;  1GKJ A;  1EB4 A; 
#chains in the Genus database with same CATH homology
 1DOF A;  2O78 A;  4HGV A;  4EFC A;  2NYF A;  1JSW A;  3R6V A;  1TJW A;  3CZO A;  4NLE A;  1FUQ A;  3RD8 A;  4APA A;  3TV2 A;  2PTR A;  1T6J A;  4ADM A;  1GKM A;  1DCN A;  1I0A A;  1HY1 A;  1FUO A;  2PTS A;  5F92 A;  1TJ7 A;  4C5R A;  2RJR A;  1B8F A;  1Y2M A;  2O7F A;  3OCE A;  4V2R A;  4MX2 A;  3KDZ A;  5EYV A;  2X75 A;  3RRP A;  4APB A;  2O7D A;  3GTD A;  1C3U A;  1FUP A;  1VDK A;  1K62 A;  4C5S A;  3E04 A;  1YIS A;  1KQ7 A;  3BHG A;  2J91 A;  1YFE A;  3NZ4 A;  1U16 A;  1K7W A;  5F91 A;  4FFX A;  2PTQ A;  4FLC A;  5D6B A;  2PFM A;  4ADL A;  4BAB A;  1FUR A;  3R6Y A;  4V2Q A;  2NYN A;  4C5U A;  1T6P A;  1J3U A;  3OCF A;  3C8T A;  3QBP A;  1HY0 A;  1U15 A;  1TJV A;  1W27 A;  2O6Y A;  1XWO A;  1GK2 A;  4C6G A;  2RJS A;  2VD6 A;  1YFM A;  2OHY A;  1RE5 A;  1AUW A;  2E9F A;  3UNV A;  3R6Q A;  2O7B A;  2YII A;  4BAA A;  3GZH A;  3KDY A;  2QGA B;  4CQ5 A;  4EEI A;  2O7E A;  3NO9 A;  1TJU A;  2FUS A;  5HW2 A;  1C3C A;  5EYT A;  2QVE A;  2HVG A;  1Q5N A;  4NSL A;  1GK3 A;  1GKJ A;  1EB4 A; 
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similar chains in the Genus database (?% sequence similarity)
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