3R6YA

Crystal structure of chymotrypsin-treated aspartase from bacillus sp. ym55-1
Total Genus 137
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
137
sequence length
390
structure length
390
Chain Sequence
VRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKAN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Aspartase
publication title Structural basis for the catalytic mechanism of aspartate ammonia lyase.
pubmed doi rcsb
source organism Bacillus sp.
total genus 137
structure length 390
sequence length 390
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 2011-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3r6yA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3r6yA02
3GZHA 2RJRA 1K7WA 3NZ4A 4ADLA 1I0AA 4BABA 2OHYA 3E04A 1VDKA 2E9FA 1HY0A 1FUOA 1C3CA 3OCFA 1W27A 2QGAB 1GK3A 1B8FA 1GKMA 3BHGA 2O7DA 1C3UA 1TJ7A 1YFMA 4APBA 2FUSA 1YFEA 1HY1A 3GTDA 2PTQA 5F92A 1AUWA 1FUQA 1JSWA 1YISA 2PFMA 3R6YA 1RE5A 4CQ5A 4FLCA 3R6QA 2O6YA 2NYFA 1DCNA 5F91A 1GK2A 2O7FA 4HGVA 3OCEA 3UNVA 4C5RA 4FFXA 1Q5NA 3QBPA 4V2RA 4C6GA 2PTRA 1DOFA 2RJSA 5D6BA 4C5SA 1TJVA 1J3UA 1KQ7A 3RRPA 1FUPA 2X75A 1T6JA 3KDYA 4C5UA 5EYTA 2QVEA 2J91A 3RD8A 1GKJA 3C8TA 5EYVA 1U15A 1U16A 3R6VA 1FURA 3CZOA 2O78A 3KDZA 4ADMA 2PTSA 4NSLA 5HW2A 4EEIA 1T6PA 1EB4A 4APAA 1Y2MA 2HVGA 1TJWA 1K62A 2VD6A 3TV2A 1TJUA 4BAAA 2YIIA 4NLEA 1XWOA 4MX2A 2O7BA 4V2QA 2O7EA 2NYNA 3NO9A 4EFCA
chains in the Genus database with same CATH superfamily
5H8WA 3GZHA 2RJRA 1K7WA 3NZ4A 4ADLA 1I0AA 4BABA 2OHYA 3E04A 1VDKA 2E9FA 2FELA 1HY0A 1FUOA 1C3CA 3CRW1 3OCFA 1W27A 2QGAB 1GK3A 1B8FA 1GKMA 3BHGA 2O7DA 1C3UA 4WNLA 1TJ7A 1YFMA 4APBA 2FUSA 1YFEA 1HY1A 3GTDA 2PTQA 5F92A 1AUWA 1FUQA 1JSWA 1YISA 2PFMA 3R6YA 1RE5A 4CQ5A 4FLCA 3R6QA 2O6YA 2NYFA 1DCNA 1XMDA 5F91A 1GK2A 1XL8A 3CRVA 2O7FA 4HGVA 3OCEA 3UNVA 4C5RA 2VL7A 4FFXA 1Q5NA 3QBPA 4V2RA 4C6GA 2PTRA 1DOFA 2RJSA 5D6BA 4C5SA 1TJVA 2FENA 1XLYA 1J3UA 1KQ7A 3RRPA 5M0JA 1FUPA 2X75A 1T6JA 3KDYA 1XMCA 5EYTA 2QVEA 4C5UA 2VSFA 2J91A 3RD8A 4A15A 1GKJA 3C8TA 5EYVA 5M0IA 1U15A 1U16A 3R6VA 1FURA 3CZOA 2O78A 3KDZA 4ADMA 2PTSA 4NSLA 5HW2A 4EEIA 1T6PA 1EB4A 4APAA 1Y2MA 2HVGA 1TJWA 1K62A 2VD6A 3TV2A 1TJUA 4BAAA 2YIIA 4NLEA 1XWOA 4MX2A 2O7BA 4V2QA 2O7EA 1XL7A 2NYNA 3NO9A 4EFCA
chains in the Genus database with same CATH topology
3GZHA 2RJRA 1K7WA 3NZ4A 4ADLA 1I0AA 4BABA 2OHYA 3E04A 1VDKA 2E9FA 1HY0A 1FUOA 1C3CA 3OCFA 1W27A 2QGAB 1GK3A 1B8FA 1GKMA 3BHGA 2O7DA 1C3UA 1TJ7A 1YFMA 4APBA 2FUSA 1YFEA 1HY1A 3GTDA 2PTQA 5F92A 1AUWA 1FUQA 1JSWA 1YISA 2PFMA 3R6YA 1RE5A 4CQ5A 4FLCA 3R6QA 2O6YA 2NYFA 1DCNA 5F91A 1GK2A 2O7FA 4HGVA 3OCEA 3UNVA 4C5RA 4FFXA 1Q5NA 3QBPA 4V2RA 4C6GA 2PTRA 1DOFA 2RJSA 5D6BA 4C5SA 1TJVA 1J3UA 1KQ7A 3RRPA 1FUPA 2X75A 1T6JA 3KDYA 4C5UA 5EYTA 2QVEA 2J91A 3RD8A 1GKJA 3C8TA 5EYVA 1U15A 1U16A 3R6VA 1FURA 3CZOA 2O78A 3KDZA 4ADMA 2PTSA 4NSLA 5HW2A 4EEIA 1T6PA 1EB4A 4APAA 1Y2MA 2HVGA 1TJWA 1K62A 2VD6A 3TV2A 1TJUA 4BAAA 2YIIA 4NLEA 1XWOA 4MX2A 2O7BA 4V2QA 2O7EA 2NYNA 3NO9A 4EFCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GZH A;  2RJR A;  1K7W A;  3NZ4 A;  4ADL A;  1I0A A;  4BAB A;  2OHY A;  3E04 A;  1VDK A;  2E9F A;  1HY0 A;  1FUO A;  1C3C A;  3OCF A;  1W27 A;  2QGA B;  1GK3 A;  1B8F A;  1GKM A;  3BHG A;  2O7D A;  1C3U A;  1TJ7 A;  1YFM A;  4APB A;  2FUS A;  1YFE A;  1HY1 A;  3GTD A;  2PTQ A;  5F92 A;  1AUW A;  1FUQ A;  1JSW A;  1YIS A;  2PFM A;  3R6Y A;  1RE5 A;  4CQ5 A;  4FLC A;  3R6Q A;  2O6Y A;  2NYF A;  1DCN A;  5F91 A;  1GK2 A;  2O7F A;  4HGV A;  3OCE A;  3UNV A;  4C5R A;  4FFX A;  1Q5N A;  3QBP A;  4V2R A;  4C6G A;  2PTR A;  1DOF A;  2RJS A;  5D6B A;  4C5S A;  1TJV A;  1J3U A;  1KQ7 A;  3RRP A;  1FUP A;  2X75 A;  1T6J A;  3KDY A;  4C5U A;  5EYT A;  2QVE A;  2J91 A;  3RD8 A;  1GKJ A;  3C8T A;  5EYV A;  1U15 A;  1U16 A;  3R6V A;  1FUR A;  3CZO A;  2O78 A;  3KDZ A;  4ADM A;  2PTS A;  4NSL A;  5HW2 A;  4EEI A;  1T6P A;  1EB4 A;  4APA A;  1Y2M A;  2HVG A;  1TJW A;  1K62 A;  2VD6 A;  3TV2 A;  1TJU A;  4BAA A;  2YII A;  4NLE A;  1XWO A;  4MX2 A;  2O7B A;  4V2Q A;  2O7E A;  2NYN A;  3NO9 A;  4EFC A; 
#chains in the Genus database with same CATH topology
 5H8W A;  3GZH A;  2RJR A;  1K7W A;  3NZ4 A;  4ADL A;  1I0A A;  4BAB A;  2OHY A;  3E04 A;  1VDK A;  2E9F A;  2FEL A;  1HY0 A;  1FUO A;  1C3C A;  3CRW 1;  3OCF A;  1W27 A;  2QGA B;  1GK3 A;  1B8F A;  1GKM A;  3BHG A;  2O7D A;  1C3U A;  4WNL A;  1TJ7 A;  1YFM A;  4APB A;  2FUS A;  1YFE A;  1HY1 A;  3GTD A;  2PTQ A;  5F92 A;  1AUW A;  1FUQ A;  1JSW A;  1YIS A;  2PFM A;  3R6Y A;  1RE5 A;  4CQ5 A;  4FLC A;  3R6Q A;  2O6Y A;  2NYF A;  1DCN A;  1XMD A;  5F91 A;  1GK2 A;  1XL8 A;  3CRV A;  2O7F A;  4HGV A;  3OCE A;  3UNV A;  4C5R A;  2VL7 A;  4FFX A;  1Q5N A;  3QBP A;  4V2R A;  4C6G A;  2PTR A;  1DOF A;  2RJS A;  5D6B A;  4C5S A;  1TJV A;  2FEN A;  1XLY A;  1J3U A;  1KQ7 A;  3RRP A;  5M0J A;  1FUP A;  2X75 A;  1T6J A;  3KDY A;  1XMC A;  5EYT A;  2QVE A;  4C5U A;  2VSF A;  2J91 A;  3RD8 A;  4A15 A;  1GKJ A;  3C8T A;  5EYV A;  5M0I A;  1U15 A;  1U16 A;  3R6V A;  1FUR A;  3CZO A;  2O78 A;  3KDZ A;  4ADM A;  2PTS A;  4NSL A;  5HW2 A;  4EEI A;  1T6P A;  1EB4 A;  4APA A;  1Y2M A;  2HVG A;  1TJW A;  1K62 A;  2VD6 A;  3TV2 A;  1TJU A;  4BAA A;  2YII A;  4NLE A;  1XWO A;  4MX2 A;  2O7B A;  4V2Q A;  2O7E A;  1XL7 A;  2NYN A;  3NO9 A;  4EFC A; 
#chains in the Genus database with same CATH homology
 3GZH A;  2RJR A;  1K7W A;  3NZ4 A;  4ADL A;  1I0A A;  4BAB A;  2OHY A;  3E04 A;  1VDK A;  2E9F A;  1HY0 A;  1FUO A;  1C3C A;  3OCF A;  1W27 A;  2QGA B;  1GK3 A;  1B8F A;  1GKM A;  3BHG A;  2O7D A;  1C3U A;  1TJ7 A;  1YFM A;  4APB A;  2FUS A;  1YFE A;  1HY1 A;  3GTD A;  2PTQ A;  5F92 A;  1AUW A;  1FUQ A;  1JSW A;  1YIS A;  2PFM A;  3R6Y A;  1RE5 A;  4CQ5 A;  4FLC A;  3R6Q A;  2O6Y A;  2NYF A;  1DCN A;  5F91 A;  1GK2 A;  2O7F A;  4HGV A;  3OCE A;  3UNV A;  4C5R A;  4FFX A;  1Q5N A;  3QBP A;  4V2R A;  4C6G A;  2PTR A;  1DOF A;  2RJS A;  5D6B A;  4C5S A;  1TJV A;  1J3U A;  1KQ7 A;  3RRP A;  1FUP A;  2X75 A;  1T6J A;  3KDY A;  4C5U A;  5EYT A;  2QVE A;  2J91 A;  3RD8 A;  1GKJ A;  3C8T A;  5EYV A;  1U15 A;  1U16 A;  3R6V A;  1FUR A;  3CZO A;  2O78 A;  3KDZ A;  4ADM A;  2PTS A;  4NSL A;  5HW2 A;  4EEI A;  1T6P A;  1EB4 A;  4APA A;  1Y2M A;  2HVG A;  1TJW A;  1K62 A;  2VD6 A;  3TV2 A;  1TJU A;  4BAA A;  2YII A;  4NLE A;  1XWO A;  4MX2 A;  2O7B A;  4V2Q A;  2O7E A;  2NYN A;  3NO9 A;  4EFC A; 
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similar chains in the Genus database (?% sequence similarity)
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