3R6YA

Crystal structure of chymotrypsin-treated aspartase from bacillus sp. ym55-1
Total Genus 137
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
137
sequence length
390
structure length
390
Chain Sequence
VRIEKDFLGEKEIPKDAYYGVQTIRATENFPITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKAN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural basis for the catalytic mechanism of aspartate ammonia lyase.
pubmed doi rcsb
source organism Bacillus sp.
molecule tags Lyase
molecule keywords Aspartase
total genus 137
structure length 390
sequence length 390
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 4.3.1.1: Aspartate ammonia-lyase.
pdb deposition date 2011-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3r6yA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3r6yA02
5D6BA 2OHYA 1TJ7A 1FURA 1HY1A 3UNVA 4MX2A 4C5SA 4EEIA 2X75A 2O7BA 1FUOA 1AUWA 3R6QA 1C3UA 4NLEA 2O7EA 2VD6A 3NZ4A 3OCEA 5F92A 1VDKA 2PFMA 2PTQA 4BABA 2E9FA 2O7FA 1J3UA 2QVEA 1XWOA 1DOFA 1K62A 1GK3A 3R6YA 2O6YA 3RD8A 3KDZA 5HW2A 2YIIA 4ADMA 1YFMA 3R6VA 4BAAA 2NYNA 3GZHA 4APBA 1GKMA 1FUQA 4NSLA 1W27A 3KDYA 4V2QA 4EFCA 1EB4A 3GTDA 1GKJA 1K7WA 4APAA 3NO9A 1KQ7A 5EYVA 1TJVA 2NYFA 1Y2MA 5EYTA 1FUPA 1JSWA 2PTRA 2RJRA 2O7DA 1RE5A 1TJWA 3RRPA 1B8FA 4HGVA 3E04A 2HVGA 1YISA 3CZOA 1C3CA 4C6GA 4FLCA 3TV2A 2RJSA 1HY0A 1U16A 2PTSA 4FFXA 3BHGA 1TJUA 2J91A 3OCFA 4CQ5A 1DCNA 1GK2A 1YFEA 4V2RA 1Q5NA 1T6JA 4C5UA 3C8TA 5F91A 1I0AA 4C5RA 2FUSA 1U15A 1T6PA 2O78A 3QBPA 4ADLA 2QGAB
chains in the Genus database with same CATH superfamily
5D6BA 3CRVA 2OHYA 1TJ7A 5H8WA 1FURA 1HY1A 3UNVA 4MX2A 4C5SA 4EEIA 2X75A 2O7BA 1FUOA 1AUWA 3R6QA 1C3UA 4NLEA 2O7EA 2VD6A 3NZ4A 3OCEA 5F92A 1VDKA 2PFMA 2PTQA 4BABA 2E9FA 2O7FA 1J3UA 2QVEA 1XWOA 1DOFA 2VSFA 1K62A 1GK3A 3R6YA 2O6YA 2VL7A 1XMCA 3RD8A 3KDZA 5HW2A 2FENA 2YIIA 4ADMA 1YFMA 3R6VA 4BAAA 2NYNA 3GZHA 4APBA 1GKMA 5M0JA 1FUQA 4NSLA 1W27A 3KDYA 4V2QA 4EFCA 1EB4A 3GTDA 1GKJA 1K7WA 1XL8A 4APAA 3NO9A 1KQ7A 5EYVA 1TJVA 2NYFA 1Y2MA 5EYTA 1FUPA 1JSWA 2PTRA 2RJRA 4A15A 2O7DA 1RE5A 1TJWA 1XLYA 3RRPA 1B8FA 4HGVA 3E04A 2HVGA 3CRW1 1YISA 3CZOA 1C3CA 4C6GA 4FLCA 3TV2A 2RJSA 1HY0A 1U16A 2PTSA 4FFXA 5M0IA 3BHGA 1TJUA 1XMDA 2J91A 1XL7A 3OCFA 4CQ5A 2FELA 1DCNA 1GK2A 1YFEA 4V2RA 1Q5NA 1T6JA 4C5UA 3C8TA 5F91A 1I0AA 4C5RA 2FUSA 1U15A 1T6PA 3QBPA 2O78A 4ADLA 4WNLA 2QGAB
chains in the Genus database with same CATH topology
5D6BA 2OHYA 1TJ7A 1FURA 1HY1A 3UNVA 4MX2A 4C5SA 4EEIA 2X75A 2O7BA 1FUOA 1AUWA 3R6QA 1C3UA 4NLEA 2O7EA 2VD6A 3NZ4A 3OCEA 5F92A 1VDKA 2PFMA 2PTQA 4BABA 2E9FA 2O7FA 1J3UA 2QVEA 1XWOA 1DOFA 1K62A 1GK3A 3R6YA 2O6YA 3RD8A 3KDZA 5HW2A 2YIIA 4ADMA 1YFMA 3R6VA 4BAAA 2NYNA 3GZHA 4APBA 1GKMA 1FUQA 4NSLA 1W27A 3KDYA 4V2QA 4EFCA 1EB4A 3GTDA 1GKJA 1K7WA 4APAA 3NO9A 1KQ7A 5EYVA 1TJVA 2NYFA 1Y2MA 5EYTA 1FUPA 1JSWA 2PTRA 2RJRA 2O7DA 1RE5A 1TJWA 3RRPA 1B8FA 4HGVA 3E04A 2HVGA 1YISA 3CZOA 1C3CA 4C6GA 4FLCA 3TV2A 2RJSA 1HY0A 1U16A 2PTSA 4FFXA 3BHGA 1TJUA 2J91A 3OCFA 4CQ5A 1DCNA 1GK2A 1YFEA 4V2RA 1Q5NA 1T6JA 4C5UA 3C8TA 5F91A 1I0AA 4C5RA 2FUSA 1U15A 1T6PA 2O78A 3QBPA 4ADLA 2QGAB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5D6B A;  2OHY A;  1TJ7 A;  1FUR A;  1HY1 A;  3UNV A;  4MX2 A;  4C5S A;  4EEI A;  2X75 A;  2O7B A;  1FUO A;  1AUW A;  3R6Q A;  1C3U A;  4NLE A;  2O7E A;  2VD6 A;  3NZ4 A;  3OCE A;  5F92 A;  1VDK A;  2PFM A;  2PTQ A;  4BAB A;  2E9F A;  2O7F A;  1J3U A;  2QVE A;  1XWO A;  1DOF A;  1K62 A;  1GK3 A;  3R6Y A;  2O6Y A;  3RD8 A;  3KDZ A;  5HW2 A;  2YII A;  4ADM A;  1YFM A;  3R6V A;  4BAA A;  2NYN A;  3GZH A;  4APB A;  1GKM A;  1FUQ A;  4NSL A;  1W27 A;  3KDY A;  4V2Q A;  4EFC A;  1EB4 A;  3GTD A;  1GKJ A;  1K7W A;  4APA A;  3NO9 A;  1KQ7 A;  5EYV A;  1TJV A;  2NYF A;  1Y2M A;  5EYT A;  1FUP A;  1JSW A;  2PTR A;  2RJR A;  2O7D A;  1RE5 A;  1TJW A;  3RRP A;  1B8F A;  4HGV A;  3E04 A;  2HVG A;  1YIS A;  3CZO A;  1C3C A;  4C6G A;  4FLC A;  3TV2 A;  2RJS A;  1HY0 A;  1U16 A;  2PTS A;  4FFX A;  3BHG A;  1TJU A;  2J91 A;  3OCF A;  4CQ5 A;  1DCN A;  1GK2 A;  1YFE A;  4V2R A;  1Q5N A;  1T6J A;  4C5U A;  3C8T A;  5F91 A;  1I0A A;  4C5R A;  2FUS A;  1U15 A;  1T6P A;  2O78 A;  3QBP A;  4ADL A;  2QGA B; 
#chains in the Genus database with same CATH topology
 5D6B A;  3CRV A;  2OHY A;  1TJ7 A;  5H8W A;  1FUR A;  1HY1 A;  3UNV A;  4MX2 A;  4C5S A;  4EEI A;  2X75 A;  2O7B A;  1FUO A;  1AUW A;  3R6Q A;  1C3U A;  4NLE A;  2O7E A;  2VD6 A;  3NZ4 A;  3OCE A;  5F92 A;  1VDK A;  2PFM A;  2PTQ A;  4BAB A;  2E9F A;  2O7F A;  1J3U A;  2QVE A;  1XWO A;  1DOF A;  2VSF A;  1K62 A;  1GK3 A;  3R6Y A;  2O6Y A;  2VL7 A;  1XMC A;  3RD8 A;  3KDZ A;  5HW2 A;  2FEN A;  2YII A;  4ADM A;  1YFM A;  3R6V A;  4BAA A;  2NYN A;  3GZH A;  4APB A;  1GKM A;  5M0J A;  1FUQ A;  4NSL A;  1W27 A;  3KDY A;  4V2Q A;  4EFC A;  1EB4 A;  3GTD A;  1GKJ A;  1K7W A;  1XL8 A;  4APA A;  3NO9 A;  1KQ7 A;  5EYV A;  1TJV A;  2NYF A;  1Y2M A;  5EYT A;  1FUP A;  1JSW A;  2PTR A;  2RJR A;  4A15 A;  2O7D A;  1RE5 A;  1TJW A;  1XLY A;  3RRP A;  1B8F A;  4HGV A;  3E04 A;  2HVG A;  3CRW 1;  1YIS A;  3CZO A;  1C3C A;  4C6G A;  4FLC A;  3TV2 A;  2RJS A;  1HY0 A;  1U16 A;  2PTS A;  4FFX A;  5M0I A;  3BHG A;  1TJU A;  1XMD A;  2J91 A;  1XL7 A;  3OCF A;  4CQ5 A;  2FEL A;  1DCN A;  1GK2 A;  1YFE A;  4V2R A;  1Q5N A;  1T6J A;  4C5U A;  3C8T A;  5F91 A;  1I0A A;  4C5R A;  2FUS A;  1U15 A;  1T6P A;  3QBP A;  2O78 A;  4ADL A;  4WNL A;  2QGA B; 
#chains in the Genus database with same CATH homology
 5D6B A;  2OHY A;  1TJ7 A;  1FUR A;  1HY1 A;  3UNV A;  4MX2 A;  4C5S A;  4EEI A;  2X75 A;  2O7B A;  1FUO A;  1AUW A;  3R6Q A;  1C3U A;  4NLE A;  2O7E A;  2VD6 A;  3NZ4 A;  3OCE A;  5F92 A;  1VDK A;  2PFM A;  2PTQ A;  4BAB A;  2E9F A;  2O7F A;  1J3U A;  2QVE A;  1XWO A;  1DOF A;  1K62 A;  1GK3 A;  3R6Y A;  2O6Y A;  3RD8 A;  3KDZ A;  5HW2 A;  2YII A;  4ADM A;  1YFM A;  3R6V A;  4BAA A;  2NYN A;  3GZH A;  4APB A;  1GKM A;  1FUQ A;  4NSL A;  1W27 A;  3KDY A;  4V2Q A;  4EFC A;  1EB4 A;  3GTD A;  1GKJ A;  1K7W A;  4APA A;  3NO9 A;  1KQ7 A;  5EYV A;  1TJV A;  2NYF A;  1Y2M A;  5EYT A;  1FUP A;  1JSW A;  2PTR A;  2RJR A;  2O7D A;  1RE5 A;  1TJW A;  3RRP A;  1B8F A;  4HGV A;  3E04 A;  2HVG A;  1YIS A;  3CZO A;  1C3C A;  4C6G A;  4FLC A;  3TV2 A;  2RJS A;  1HY0 A;  1U16 A;  2PTS A;  4FFX A;  3BHG A;  1TJU A;  2J91 A;  3OCF A;  4CQ5 A;  1DCN A;  1GK2 A;  1YFE A;  4V2R A;  1Q5N A;  1T6J A;  4C5U A;  3C8T A;  5F91 A;  1I0A A;  4C5R A;  2FUS A;  1U15 A;  1T6P A;  2O78 A;  3QBP A;  4ADL A;  2QGA B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...