2VD6A

Human adenylosuccinate lyase in complex with its substrate n6-(1,2- dicarboxyethyl)-amp, and its products amp and fumarate.
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
sequence length
470
structure length
461
Chain Sequence
GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPYES
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Homo sapiens
publication title Human Adenylosuccinate Lyase in Complex with its Substrate N6-(1,2-Dicarboxyethyl)-AMP, and its Products AMP and Fumarate.
rcsb
molecule keywords ADENYLOSUCCINATE LYASE
total genus 185
structure length 461
sequence length 470
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2007-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10397 ADSL_C Adenylosuccinate lyase C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2vd6A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2vd6A02
3CZOA 3R6VA 4BABA 5F91A 1TJVA 1GKJA 2FUSA 1C3CA 4NSLA 3R6YA 3QBPA 3C8TA 1FUPA 2O7FA 5EYTA 2O7DA 3KDZA 1W27A 2NYNA 3RD8A 2RJRA 2O7EA 3NZ4A 3BHGA 1GK3A 5F92A 1VDKA 3OCEA 1I0AA 2RJSA 3TV2A 4ADMA 2QVEA 1FUOA 4APBA 4C6GA 4FLCA 2PTRA 1Q5NA 2NYFA 3KDYA 1K62A 2E9FA 4APAA 3GZHA 3RRPA 1JSWA 3OCFA 5HW2A 1DOFA 1YFMA 1T6PA 1YFEA 1YISA 2X75A 2PFMA 1K7WA 5EYVA 4FFXA 2O78A 4CQ5A 4HGVA 4EEIA 4V2QA 4C5UA 4C5SA 1AUWA 2PTSA 1J3UA 3UNVA 1Y2MA 1TJWA 1FUQA 1T6JA 1HY0A 1XWOA 1GK2A 1RE5A 1KQ7A 2PTQA 4BAAA 3R6QA 2VD6A 1U16A 4MX2A 4NLEA 4EFCA 1C3UA 4ADLA 1TJ7A 3E04A 1FURA 4C5RA 3GTDA 2OHYA 1HY1A 1DCNA 1TJUA 3NO9A 2J91A 1U15A 2O6YA 2HVGA 2QGAB 4V2RA 1EB4A 2YIIA 1GKMA 5D6BA 2O7BA 1B8FA
chains in the Genus database with same CATH superfamily
3CZOA 3R6VA 4BABA 5F91A 1TJVA 2FELA 1GKJA 4A15A 2FUSA 1C3CA 4NSLA 3R6YA 3QBPA 3C8TA 1FUPA 2O7FA 5EYTA 2O7DA 3KDZA 1W27A 2NYNA 3RD8A 2RJRA 2O7EA 3NZ4A 3BHGA 1GK3A 5F92A 1VDKA 3OCEA 1I0AA 2RJSA 3TV2A 4ADMA 2QVEA 1FUOA 4APBA 4C6GA 4FLCA 2PTRA 1Q5NA 1XL8A 2NYFA 1XMCA 3KDYA 1K62A 2E9FA 4WNLA 4APAA 3GZHA 3RRPA 1JSWA 3OCFA 5HW2A 1DOFA 1YFMA 1T6PA 1YFEA 1YISA 2X75A 3CRVA 2VSFA 2PFMA 1K7WA 5EYVA 4FFXA 2O78A 5M0JA 4CQ5A 4HGVA 4EEIA 4V2QA 4C5UA 4C5SA 1AUWA 2PTSA 1XL7A 1J3UA 3UNVA 1Y2MA 1TJWA 2FENA 1FUQA 1T6JA 1HY0A 1XWOA 1GK2A 1RE5A 1KQ7A 2PTQA 4BAAA 3R6QA 2VD6A 1U16A 4MX2A 4NLEA 4EFCA 1C3UA 4ADLA 5M0IA 1XMDA 2VL7A 5H8WA 1TJ7A 3E04A 1FURA 4C5RA 3GTDA 2OHYA 1HY1A 1DCNA 1TJUA 3NO9A 2J91A 1U15A 2O6YA 2HVGA 2QGAB 4V2RA 1EB4A 2YIIA 3CRW1 1XLYA 1GKMA 5D6BA 2O7BA 1B8FA
chains in the Genus database with same CATH topology
3CZOA 3R6VA 4BABA 5F91A 1TJVA 1GKJA 2FUSA 1C3CA 4NSLA 3R6YA 3QBPA 3C8TA 1FUPA 2O7FA 5EYTA 2O7DA 3KDZA 1W27A 2NYNA 3RD8A 2RJRA 2O7EA 3NZ4A 3BHGA 1GK3A 5F92A 1VDKA 3OCEA 1I0AA 2RJSA 3TV2A 4ADMA 2QVEA 1FUOA 4APBA 4C6GA 4FLCA 2PTRA 1Q5NA 2NYFA 3KDYA 1K62A 2E9FA 4APAA 3GZHA 3RRPA 1JSWA 3OCFA 5HW2A 1DOFA 1YFMA 1T6PA 1YFEA 1YISA 2X75A 2PFMA 1K7WA 5EYVA 4FFXA 2O78A 4CQ5A 4HGVA 4EEIA 4V2QA 4C5UA 4C5SA 1AUWA 2PTSA 1J3UA 3UNVA 1Y2MA 1TJWA 1FUQA 1T6JA 1HY0A 1XWOA 1GK2A 1RE5A 1KQ7A 2PTQA 4BAAA 3R6QA 2VD6A 1U16A 4MX2A 4NLEA 4EFCA 1C3UA 4ADLA 1TJ7A 3E04A 1FURA 4C5RA 3GTDA 2OHYA 1HY1A 1DCNA 1TJUA 3NO9A 2J91A 1U15A 2O6YA 2HVGA 2QGAB 4V2RA 1EB4A 2YIIA 1GKMA 5D6BA 2O7BA 1B8FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CZO A;  3R6V A;  4BAB A;  5F91 A;  1TJV A;  1GKJ A;  2FUS A;  1C3C A;  4NSL A;  3R6Y A;  3QBP A;  3C8T A;  1FUP A;  2O7F A;  5EYT A;  2O7D A;  3KDZ A;  1W27 A;  2NYN A;  3RD8 A;  2RJR A;  2O7E A;  3NZ4 A;  3BHG A;  1GK3 A;  5F92 A;  1VDK A;  3OCE A;  1I0A A;  2RJS A;  3TV2 A;  4ADM A;  2QVE A;  1FUO A;  4APB A;  4C6G A;  4FLC A;  2PTR A;  1Q5N A;  2NYF A;  3KDY A;  1K62 A;  2E9F A;  4APA A;  3GZH A;  3RRP A;  1JSW A;  3OCF A;  5HW2 A;  1DOF A;  1YFM A;  1T6P A;  1YFE A;  1YIS A;  2X75 A;  2PFM A;  1K7W A;  5EYV A;  4FFX A;  2O78 A;  4CQ5 A;  4HGV A;  4EEI A;  4V2Q A;  4C5U A;  4C5S A;  1AUW A;  2PTS A;  1J3U A;  3UNV A;  1Y2M A;  1TJW A;  1FUQ A;  1T6J A;  1HY0 A;  1XWO A;  1GK2 A;  1RE5 A;  1KQ7 A;  2PTQ A;  4BAA A;  3R6Q A;  2VD6 A;  1U16 A;  4MX2 A;  4NLE A;  4EFC A;  1C3U A;  4ADL A;  1TJ7 A;  3E04 A;  1FUR A;  4C5R A;  3GTD A;  2OHY A;  1HY1 A;  1DCN A;  1TJU A;  3NO9 A;  2J91 A;  1U15 A;  2O6Y A;  2HVG A;  2QGA B;  4V2R A;  1EB4 A;  2YII A;  1GKM A;  5D6B A;  2O7B A;  1B8F A; 
#chains in the Genus database with same CATH topology
 3CZO A;  3R6V A;  4BAB A;  5F91 A;  1TJV A;  2FEL A;  1GKJ A;  4A15 A;  2FUS A;  1C3C A;  4NSL A;  3R6Y A;  3QBP A;  3C8T A;  1FUP A;  2O7F A;  5EYT A;  2O7D A;  3KDZ A;  1W27 A;  2NYN A;  3RD8 A;  2RJR A;  2O7E A;  3NZ4 A;  3BHG A;  1GK3 A;  5F92 A;  1VDK A;  3OCE A;  1I0A A;  2RJS A;  3TV2 A;  4ADM A;  2QVE A;  1FUO A;  4APB A;  4C6G A;  4FLC A;  2PTR A;  1Q5N A;  1XL8 A;  2NYF A;  1XMC A;  3KDY A;  1K62 A;  2E9F A;  4WNL A;  4APA A;  3GZH A;  3RRP A;  1JSW A;  3OCF A;  5HW2 A;  1DOF A;  1YFM A;  1T6P A;  1YFE A;  1YIS A;  2X75 A;  3CRV A;  2VSF A;  2PFM A;  1K7W A;  5EYV A;  4FFX A;  2O78 A;  5M0J A;  4CQ5 A;  4HGV A;  4EEI A;  4V2Q A;  4C5U A;  4C5S A;  1AUW A;  2PTS A;  1XL7 A;  1J3U A;  3UNV A;  1Y2M A;  1TJW A;  2FEN A;  1FUQ A;  1T6J A;  1HY0 A;  1XWO A;  1GK2 A;  1RE5 A;  1KQ7 A;  2PTQ A;  4BAA A;  3R6Q A;  2VD6 A;  1U16 A;  4MX2 A;  4NLE A;  4EFC A;  1C3U A;  4ADL A;  5M0I A;  1XMD A;  2VL7 A;  5H8W A;  1TJ7 A;  3E04 A;  1FUR A;  4C5R A;  3GTD A;  2OHY A;  1HY1 A;  1DCN A;  1TJU A;  3NO9 A;  2J91 A;  1U15 A;  2O6Y A;  2HVG A;  2QGA B;  4V2R A;  1EB4 A;  2YII A;  3CRW 1;  1XLY A;  1GKM A;  5D6B A;  2O7B A;  1B8F A; 
#chains in the Genus database with same CATH homology
 3CZO A;  3R6V A;  4BAB A;  5F91 A;  1TJV A;  1GKJ A;  2FUS A;  1C3C A;  4NSL A;  3R6Y A;  3QBP A;  3C8T A;  1FUP A;  2O7F A;  5EYT A;  2O7D A;  3KDZ A;  1W27 A;  2NYN A;  3RD8 A;  2RJR A;  2O7E A;  3NZ4 A;  3BHG A;  1GK3 A;  5F92 A;  1VDK A;  3OCE A;  1I0A A;  2RJS A;  3TV2 A;  4ADM A;  2QVE A;  1FUO A;  4APB A;  4C6G A;  4FLC A;  2PTR A;  1Q5N A;  2NYF A;  3KDY A;  1K62 A;  2E9F A;  4APA A;  3GZH A;  3RRP A;  1JSW A;  3OCF A;  5HW2 A;  1DOF A;  1YFM A;  1T6P A;  1YFE A;  1YIS A;  2X75 A;  2PFM A;  1K7W A;  5EYV A;  4FFX A;  2O78 A;  4CQ5 A;  4HGV A;  4EEI A;  4V2Q A;  4C5U A;  4C5S A;  1AUW A;  2PTS A;  1J3U A;  3UNV A;  1Y2M A;  1TJW A;  1FUQ A;  1T6J A;  1HY0 A;  1XWO A;  1GK2 A;  1RE5 A;  1KQ7 A;  2PTQ A;  4BAA A;  3R6Q A;  2VD6 A;  1U16 A;  4MX2 A;  4NLE A;  4EFC A;  1C3U A;  4ADL A;  1TJ7 A;  3E04 A;  1FUR A;  4C5R A;  3GTD A;  2OHY A;  1HY1 A;  1DCN A;  1TJU A;  3NO9 A;  2J91 A;  1U15 A;  2O6Y A;  2HVG A;  2QGA B;  4V2R A;  1EB4 A;  2YII A;  1GKM A;  5D6B A;  2O7B A;  1B8F A; 
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