2VD6A

Human adenylosuccinate lyase in complex with its substrate n6-(1,2- dicarboxyethyl)-amp, and its products amp and fumarate.
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
sequence length
470
structure length
461
Chain Sequence
GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIQEMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFEPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPYES
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ADENYLOSUCCINATE LYASE
publication title Human Adenylosuccinate Lyase in Complex with its Substrate N6-(1,2-Dicarboxyethyl)-AMP, and its Products AMP and Fumarate.
rcsb
source organism Homo sapiens
molecule tags Lyase
total genus 185
structure length 461
sequence length 470
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2007-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10397 ADSL_C Adenylosuccinate lyase C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2vd6A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2vd6A02
1GK2A 5D6BA 4BAAA 1U16A 3CZOA 5HW2A 1C3UA 2O7BA 2PFMA 1EB4A 4C5SA 1AUWA 2NYFA 1RE5A 1FUPA 1VDKA 1T6JA 3C8TA 2X75A 1YISA 2E9FA 3NO9A 2NYNA 4CQ5A 3GTDA 1C3CA 3KDYA 1TJWA 1XWOA 4FLCA 3NZ4A 3KDZA 3E04A 2O7DA 3OCFA 2QGAB 1GK3A 4NLEA 3OCEA 3RD8A 4C5RA 1K62A 2YIIA 1DOFA 4C6GA 1K7WA 4BABA 4APBA 4FFXA 2O7FA 4HGVA 4MX2A 2QVEA 1B8FA 2RJRA 1YFMA 5F91A 2PTSA 1Q5NA 3TV2A 1JSWA 5EYTA 2PTRA 4EEIA 1TJVA 2O7EA 3BHGA 4ADLA 2RJSA 1T6PA 1U15A 1W27A 2O78A 2FUSA 1DCNA 1FURA 1I0AA 2VD6A 1GKMA 5F92A 1HY1A 3QBPA 2OHYA 1KQ7A 4NSLA 1FUQA 3RRPA 2J91A 4V2QA 1TJ7A 2HVGA 3R6VA 1GKJA 3R6QA 1TJUA 1J3UA 3R6YA 5EYVA 1Y2MA 4C5UA 4EFCA 2O6YA 1YFEA 1HY0A 4ADMA 4APAA 1FUOA 3UNVA 4V2RA 2PTQA 3GZHA
chains in the Genus database with same CATH superfamily
1GK2A 5D6BA 4BAAA 1U16A 2FELA 3CZOA 1XL8A 5HW2A 1C3UA 2O7BA 2PFMA 1EB4A 5M0JA 4C5SA 1AUWA 2NYFA 1XMCA 1RE5A 1FUPA 1VDKA 1T6JA 3C8TA 2X75A 1YISA 2E9FA 3NO9A 2NYNA 4CQ5A 3GTDA 1C3CA 3KDYA 1TJWA 1XWOA 4FLCA 3NZ4A 3KDZA 3E04A 2O7DA 3OCFA 2QGAB 1GK3A 5M0IA 4NLEA 3CRW1 3OCEA 3RD8A 4C5RA 1K62A 2YIIA 1DOFA 4C6GA 1K7WA 2VSFA 3CRVA 4FFXA 4APBA 4BABA 2O7FA 4HGVA 4MX2A 2QVEA 1B8FA 2RJRA 1YFMA 5F91A 2PTSA 1Q5NA 3TV2A 1JSWA 5EYTA 2PTRA 4EEIA 1TJVA 2O7EA 3BHGA 4ADLA 2RJSA 1XL7A 1T6PA 1U15A 1W27A 2VL7A 2O78A 1XMDA 2FUSA 1DCNA 1FURA 1I0AA 2VD6A 1GKMA 5F92A 4WNLA 1HY1A 3QBPA 2OHYA 1KQ7A 4NSLA 4A15A 1FUQA 3RRPA 2J91A 4V2QA 1TJ7A 2HVGA 3R6VA 1GKJA 3R6QA 1XLYA 1TJUA 1J3UA 3R6YA 5EYVA 1Y2MA 4C5UA 4EFCA 2O6YA 1YFEA 1HY0A 2FENA 4ADMA 4APAA 1FUOA 3UNVA 5H8WA 4V2RA 2PTQA 3GZHA
chains in the Genus database with same CATH topology
1GK2A 5D6BA 4BAAA 1U16A 3CZOA 5HW2A 1C3UA 2O7BA 2PFMA 1EB4A 4C5SA 1AUWA 2NYFA 1RE5A 1FUPA 1VDKA 1T6JA 3C8TA 2X75A 1YISA 2E9FA 3NO9A 2NYNA 4CQ5A 3GTDA 1C3CA 3KDYA 1TJWA 1XWOA 4FLCA 3NZ4A 3KDZA 3E04A 2O7DA 3OCFA 2QGAB 1GK3A 4NLEA 3OCEA 3RD8A 4C5RA 1K62A 2YIIA 1DOFA 4C6GA 1K7WA 4BABA 4APBA 4FFXA 2O7FA 4HGVA 4MX2A 2QVEA 1B8FA 2RJRA 1YFMA 5F91A 2PTSA 1Q5NA 3TV2A 1JSWA 5EYTA 2PTRA 4EEIA 1TJVA 2O7EA 3BHGA 4ADLA 2RJSA 1T6PA 1U15A 1W27A 2O78A 2FUSA 1DCNA 1FURA 1I0AA 2VD6A 1GKMA 5F92A 1HY1A 3QBPA 2OHYA 1KQ7A 4NSLA 1FUQA 3RRPA 2J91A 4V2QA 1TJ7A 2HVGA 3R6VA 1GKJA 3R6QA 1TJUA 1J3UA 3R6YA 5EYVA 1Y2MA 4C5UA 4EFCA 2O6YA 1YFEA 1HY0A 4ADMA 4APAA 1FUOA 3UNVA 4V2RA 2PTQA 3GZHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GK2 A;  5D6B A;  4BAA A;  1U16 A;  3CZO A;  5HW2 A;  1C3U A;  2O7B A;  2PFM A;  1EB4 A;  4C5S A;  1AUW A;  2NYF A;  1RE5 A;  1FUP A;  1VDK A;  1T6J A;  3C8T A;  2X75 A;  1YIS A;  2E9F A;  3NO9 A;  2NYN A;  4CQ5 A;  3GTD A;  1C3C A;  3KDY A;  1TJW A;  1XWO A;  4FLC A;  3NZ4 A;  3KDZ A;  3E04 A;  2O7D A;  3OCF A;  2QGA B;  1GK3 A;  4NLE A;  3OCE A;  3RD8 A;  4C5R A;  1K62 A;  2YII A;  1DOF A;  4C6G A;  1K7W A;  4BAB A;  4APB A;  4FFX A;  2O7F A;  4HGV A;  4MX2 A;  2QVE A;  1B8F A;  2RJR A;  1YFM A;  5F91 A;  2PTS A;  1Q5N A;  3TV2 A;  1JSW A;  5EYT A;  2PTR A;  4EEI A;  1TJV A;  2O7E A;  3BHG A;  4ADL A;  2RJS A;  1T6P A;  1U15 A;  1W27 A;  2O78 A;  2FUS A;  1DCN A;  1FUR A;  1I0A A;  2VD6 A;  1GKM A;  5F92 A;  1HY1 A;  3QBP A;  2OHY A;  1KQ7 A;  4NSL A;  1FUQ A;  3RRP A;  2J91 A;  4V2Q A;  1TJ7 A;  2HVG A;  3R6V A;  1GKJ A;  3R6Q A;  1TJU A;  1J3U A;  3R6Y A;  5EYV A;  1Y2M A;  4C5U A;  4EFC A;  2O6Y A;  1YFE A;  1HY0 A;  4ADM A;  4APA A;  1FUO A;  3UNV A;  4V2R A;  2PTQ A;  3GZH A; 
#chains in the Genus database with same CATH topology
 1GK2 A;  5D6B A;  4BAA A;  1U16 A;  2FEL A;  3CZO A;  1XL8 A;  5HW2 A;  1C3U A;  2O7B A;  2PFM A;  1EB4 A;  5M0J A;  4C5S A;  1AUW A;  2NYF A;  1XMC A;  1RE5 A;  1FUP A;  1VDK A;  1T6J A;  3C8T A;  2X75 A;  1YIS A;  2E9F A;  3NO9 A;  2NYN A;  4CQ5 A;  3GTD A;  1C3C A;  3KDY A;  1TJW A;  1XWO A;  4FLC A;  3NZ4 A;  3KDZ A;  3E04 A;  2O7D A;  3OCF A;  2QGA B;  1GK3 A;  5M0I A;  4NLE A;  3CRW 1;  3OCE A;  3RD8 A;  4C5R A;  1K62 A;  2YII A;  1DOF A;  4C6G A;  1K7W A;  2VSF A;  3CRV A;  4FFX A;  4APB A;  4BAB A;  2O7F A;  4HGV A;  4MX2 A;  2QVE A;  1B8F A;  2RJR A;  1YFM A;  5F91 A;  2PTS A;  1Q5N A;  3TV2 A;  1JSW A;  5EYT A;  2PTR A;  4EEI A;  1TJV A;  2O7E A;  3BHG A;  4ADL A;  2RJS A;  1XL7 A;  1T6P A;  1U15 A;  1W27 A;  2VL7 A;  2O78 A;  1XMD A;  2FUS A;  1DCN A;  1FUR A;  1I0A A;  2VD6 A;  1GKM A;  5F92 A;  4WNL A;  1HY1 A;  3QBP A;  2OHY A;  1KQ7 A;  4NSL A;  4A15 A;  1FUQ A;  3RRP A;  2J91 A;  4V2Q A;  1TJ7 A;  2HVG A;  3R6V A;  1GKJ A;  3R6Q A;  1XLY A;  1TJU A;  1J3U A;  3R6Y A;  5EYV A;  1Y2M A;  4C5U A;  4EFC A;  2O6Y A;  1YFE A;  1HY0 A;  2FEN A;  4ADM A;  4APA A;  1FUO A;  3UNV A;  5H8W A;  4V2R A;  2PTQ A;  3GZH A; 
#chains in the Genus database with same CATH homology
 1GK2 A;  5D6B A;  4BAA A;  1U16 A;  3CZO A;  5HW2 A;  1C3U A;  2O7B A;  2PFM A;  1EB4 A;  4C5S A;  1AUW A;  2NYF A;  1RE5 A;  1FUP A;  1VDK A;  1T6J A;  3C8T A;  2X75 A;  1YIS A;  2E9F A;  3NO9 A;  2NYN A;  4CQ5 A;  3GTD A;  1C3C A;  3KDY A;  1TJW A;  1XWO A;  4FLC A;  3NZ4 A;  3KDZ A;  3E04 A;  2O7D A;  3OCF A;  2QGA B;  1GK3 A;  4NLE A;  3OCE A;  3RD8 A;  4C5R A;  1K62 A;  2YII A;  1DOF A;  4C6G A;  1K7W A;  4BAB A;  4APB A;  4FFX A;  2O7F A;  4HGV A;  4MX2 A;  2QVE A;  1B8F A;  2RJR A;  1YFM A;  5F91 A;  2PTS A;  1Q5N A;  3TV2 A;  1JSW A;  5EYT A;  2PTR A;  4EEI A;  1TJV A;  2O7E A;  3BHG A;  4ADL A;  2RJS A;  1T6P A;  1U15 A;  1W27 A;  2O78 A;  2FUS A;  1DCN A;  1FUR A;  1I0A A;  2VD6 A;  1GKM A;  5F92 A;  1HY1 A;  3QBP A;  2OHY A;  1KQ7 A;  4NSL A;  1FUQ A;  3RRP A;  2J91 A;  4V2Q A;  1TJ7 A;  2HVG A;  3R6V A;  1GKJ A;  3R6Q A;  1TJU A;  1J3U A;  3R6Y A;  5EYV A;  1Y2M A;  4C5U A;  4EFC A;  2O6Y A;  1YFE A;  1HY0 A;  4ADM A;  4APA A;  1FUO A;  3UNV A;  4V2R A;  2PTQ A;  3GZH A; 
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