5M0IA

Crystal structure of the nuclear complex with she2p and the ash1 mrna e3-localization element
Total Genus 96
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
96
sequence length
241
structure length
225
Chain Sequence
LGSDIKVTPGTSELVEQILALLSRYLSSYIHVLNKFISHLRRVATLRFERTTLIKFVKKLRFYNDSVLSYNASEFIADSFDKVILPIASMFVKSVETFDLLNYYLTQSLQKEILSKTLNEDLTLTAESILAIDDTYNHFVKFSQWMIESLRIGSNLLDLEVVQFAIKSADEDGDNIFLQEILPVNSEEEFQTLSAAWHSILDGKLSALDEEFDVVATKWHDKFGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords SWI5-dependent HO expression protein 2
publication title Molecular architecture and dynamics of ASH1 mRNA recognition by its mRNA-transport complex.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Transport protein
total genus 96
structure length 225
sequence length 241
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2016-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11435 She2p RNA binding protein She2p
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.200.20 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 She2 domain 5m0iA00
5M0JA 5M0IA 1XLYA 4WNLA
chains in the Genus database with same CATH superfamily
2PTQA 2NYFA 1FUOA 1HY1A 4C5SA 1B8FA 4APBA 2O7BA 1DCNA 3RRPA 1EB4A 4FLCA 2E9FA 4FFXA 1GKJA 3BHGA 2QVEA 1U16A 2PTRA 1TJ7A 1GKMA 4C5RA 2RJRA 5M0JA 1TJWA 1U15A 3CZOA 2HVGA 2O7DA 5EYTA 2PFMA 4ADMA 1TJVA 4HGVA 2QGAB 5D6BA 1GK3A 3TV2A 4CQ5A 1C3UA 2FUSA 3KDYA 1KQ7A 3C8TA 4V2RA 1Y2MA 2J91A 1RE5A 3NZ4A 5HW2A 2OHYA 2X75A 4NSLA 1XLYA 1J3UA 1FUPA 1XWOA 1TJUA 1C3CA 2NYNA 4C6GA 4EEIA 2VD6A 1YFMA 4APAA 4WNLA 1FUQA 1AUWA 3E04A 4NLEA 2YIIA 1K7WA 4C5UA 5M0IA 1T6JA 3GZHA 1T6PA 1VDKA 5F92A 3R6QA 3QBPA 3NO9A 1YFEA 1GK2A 4BABA 3R6YA 3RD8A 2O6YA 4V2QA 3OCEA 1W27A 3KDZA 3R6VA 3UNVA 2FENA 2PTSA 4BAAA 3GTDA 3OCFA 5F91A 2O7EA 1Q5NA 2FELA 4ADLA 2RJSA 2O7FA 1YISA 2O78A 4MX2A 1I0AA 1K62A 1HY0A 1FURA 1DOFA 4EFCA 5EYVA 1JSWA
chains in the Genus database with same CATH topology
5M0JA 5M0IA 1XLYA 4WNLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5M0J A;  5M0I A;  1XLY A;  4WNL A; 
#chains in the Genus database with same CATH topology
 2PTQ A;  2NYF A;  1FUO A;  1HY1 A;  4C5S A;  1B8F A;  4APB A;  2O7B A;  1DCN A;  3RRP A;  1EB4 A;  4FLC A;  2E9F A;  4FFX A;  1GKJ A;  3BHG A;  2QVE A;  1U16 A;  2PTR A;  1TJ7 A;  1GKM A;  4C5R A;  2RJR A;  5M0J A;  1TJW A;  1U15 A;  3CZO A;  2HVG A;  2O7D A;  5EYT A;  2PFM A;  4ADM A;  1TJV A;  4HGV A;  2QGA B;  5D6B A;  1GK3 A;  3TV2 A;  4CQ5 A;  1C3U A;  2FUS A;  3KDY A;  1KQ7 A;  3C8T A;  4V2R A;  1Y2M A;  2J91 A;  1RE5 A;  3NZ4 A;  5HW2 A;  2OHY A;  2X75 A;  4NSL A;  1XLY A;  1J3U A;  1FUP A;  1XWO A;  1TJU A;  1C3C A;  2NYN A;  4C6G A;  4EEI A;  2VD6 A;  1YFM A;  4APA A;  4WNL A;  1FUQ A;  1AUW A;  3E04 A;  4NLE A;  2YII A;  1K7W A;  4C5U A;  5M0I A;  1T6J A;  3GZH A;  1T6P A;  1VDK A;  5F92 A;  3R6Q A;  3QBP A;  3NO9 A;  1YFE A;  1GK2 A;  4BAB A;  3R6Y A;  3RD8 A;  2O6Y A;  4V2Q A;  3OCE A;  1W27 A;  3KDZ A;  3R6V A;  3UNV A;  2FEN A;  2PTS A;  4BAA A;  3GTD A;  3OCF A;  5F91 A;  2O7E A;  1Q5N A;  2FEL A;  4ADL A;  2RJS A;  2O7F A;  1YIS A;  2O78 A;  4MX2 A;  1I0A A;  1K62 A;  1HY0 A;  1FUR A;  1DOF A;  4EFC A;  5EYV A;  1JSW A; 
#chains in the Genus database with same CATH homology
 5M0J A;  5M0I A;  1XLY A;  4WNL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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