5M0IA

Crystal structure of the nuclear complex with she2p and the ash1 mrna e3-localization element
Total Genus 96
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
96
sequence length
241
structure length
225
Chain Sequence
LGSDIKVTPGTSELVEQILALLSRYLSSYIHVLNKFISHLRRVATLRFERTTLIKFVKKLRFYNDSVLSYNASEFIADSFDKVILPIASMFVKSVETFDLLNYYLTQSLQKEILSKTLNEDLTLTAESILAIDDTYNHFVKFSQWMIESLRIGSNLLDLEVVQFAIKSADEDGDNIFLQEILPVNSEEEFQTLSAAWHSILDGKLSALDEEFDVVATKWHDKFGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
source organism Saccharomyces cerevisiae
publication title Molecular architecture and dynamics of ASH1 mRNA recognition by its mRNA-transport complex.
pubmed doi rcsb
molecule keywords SWI5-dependent HO expression protein 2
total genus 96
structure length 225
sequence length 241
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2016-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11435 She2p RNA binding protein She2p
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.200.20 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 She2 domain 5m0iA00
5M0IA 1XLYA 5M0JA 4WNLA
chains in the Genus database with same CATH superfamily
1FUOA 4FFXA 1U15A 1GKMA 2HVGA 3CZOA 1JSWA 4EFCA 1FURA 3NO9A 4V2RA 1B8FA 1EB4A 2O6YA 5M0JA 5D6BA 4EEIA 2PTQA 4C5UA 1YFEA 3GZHA 4FLCA 1RE5A 1J3UA 3RD8A 1I0AA 1GK3A 3GTDA 2PTSA 1YISA 2QVEA 4WNLA 5M0IA 1FUQA 1TJUA 2VD6A 4HGVA 3OCEA 3R6VA 3RRPA 2RJRA 4C5SA 2FENA 2X75A 2YIIA 2PTRA 1XWOA 2O7FA 2OHYA 1TJ7A 3QBPA 4MX2A 4ADLA 2PFMA 4C6GA 4BABA 3KDZA 1GK2A 4APBA 4APAA 1HY0A 1TJVA 4NSLA 1AUWA 1Q5NA 4ADMA 1XLYA 4NLEA 3C8TA 1K7WA 1DCNA 3R6QA 1HY1A 1T6JA 2O7DA 2O7EA 2RJSA 3BHGA 3OCFA 1T6PA 3KDYA 2O78A 2QGAB 3R6YA 1TJWA 1C3UA 2FELA 1FUPA 5F91A 2E9FA 1W27A 3E04A 1YFMA 4V2QA 5F92A 1C3CA 1DOFA 2NYNA 5EYVA 5EYTA 2FUSA 3UNVA 4BAAA 2NYFA 1KQ7A 1K62A 1Y2MA 1VDKA 5HW2A 1U16A 3TV2A 3NZ4A 1GKJA 2J91A 4C5RA 4CQ5A 2O7BA
chains in the Genus database with same CATH topology
5M0IA 1XLYA 5M0JA 4WNLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5M0I A;  1XLY A;  5M0J A;  4WNL A; 
#chains in the Genus database with same CATH topology
 1FUO A;  4FFX A;  1U15 A;  1GKM A;  2HVG A;  3CZO A;  1JSW A;  4EFC A;  1FUR A;  3NO9 A;  4V2R A;  1B8F A;  1EB4 A;  2O6Y A;  5M0J A;  5D6B A;  4EEI A;  2PTQ A;  4C5U A;  1YFE A;  3GZH A;  4FLC A;  1RE5 A;  1J3U A;  3RD8 A;  1I0A A;  1GK3 A;  3GTD A;  2PTS A;  1YIS A;  2QVE A;  4WNL A;  5M0I A;  1FUQ A;  1TJU A;  2VD6 A;  4HGV A;  3OCE A;  3R6V A;  3RRP A;  2RJR A;  4C5S A;  2FEN A;  2X75 A;  2YII A;  2PTR A;  1XWO A;  2O7F A;  2OHY A;  1TJ7 A;  3QBP A;  4MX2 A;  4ADL A;  2PFM A;  4C6G A;  4BAB A;  3KDZ A;  1GK2 A;  4APB A;  4APA A;  1HY0 A;  1TJV A;  4NSL A;  1AUW A;  1Q5N A;  4ADM A;  1XLY A;  4NLE A;  3C8T A;  1K7W A;  1DCN A;  3R6Q A;  1HY1 A;  1T6J A;  2O7D A;  2O7E A;  2RJS A;  3BHG A;  3OCF A;  1T6P A;  3KDY A;  2O78 A;  2QGA B;  3R6Y A;  1TJW A;  1C3U A;  2FEL A;  1FUP A;  5F91 A;  2E9F A;  1W27 A;  3E04 A;  1YFM A;  4V2Q A;  5F92 A;  1C3C A;  1DOF A;  2NYN A;  5EYV A;  5EYT A;  2FUS A;  3UNV A;  4BAA A;  2NYF A;  1KQ7 A;  1K62 A;  1Y2M A;  1VDK A;  5HW2 A;  1U16 A;  3TV2 A;  3NZ4 A;  1GKJ A;  2J91 A;  4C5R A;  4CQ5 A;  2O7B A; 
#chains in the Genus database with same CATH homology
 5M0I A;  1XLY A;  5M0J A;  4WNL A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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