3CZOA

Crystal structure of double mutant phenylalanine ammonia-lyase from anabaena variabilis
Total Genus 189
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
189
sequence length
537
structure length
536
Chain Sequence
NVIIGNQKLTINDVARVARNGTLVSLTNNTDILQGIQASCDYINNAVESGEPIYGVTSGFGGMANVAISREQASELQTNLVWFLKTGAGNKLPLADVRAAMLLRANSHMRGASGIRLELIKRMEIFLNAGVTPYVYEFGSIGDLVPLSYITGSLIGLDPSFKVDFNGKEMDAPTALRQLNLSPLTLLPKEGLAMMNGTSVMTGIAANCVYDTQILTAIAMGVHALDIQALNGTNQSFHPFIHNSKPHPGQLWAADQMISLLANSQLVRDELDGKHDYRDHELIQDRYSLRCLPQYLGPIVDGISQIAKQIEIEINSVTDNPLIDVDNQASYHGGNFLGQYVGMGMDHLRYYIGLLAKHLDVQIALLASPEFSNGLPPSLLGNRERKVNMGLKGLQICGNSIMPLLTFYGNSIADRFPTHAEQFNQNINSQGYTSATLARRSVDIFQNYVAIALMFGVQAVDLRTYKKTGHYDARASLSPATERLYSAVRHVVGQKPTSDRPYIWNDNEQGLDEHIARISADIAAGGVIVQAVQDIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Histidine ammonia-lyase
publication title Structural and biochemical characterization of the therapeutic Anabaena variabilis phenylalanine ammonia lyase.
pubmed doi rcsb
source organism Anabaena variabilis
molecule tags Lyase
total genus 189
structure length 536
sequence length 537
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.24: Phenylalanine ammonia-lyase.
pdb deposition date 2008-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3czoA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3czoA02
1U16A 1DOFA 2X75A 5D6BA 2NYFA 3NZ4A 2RJRA 2YIIA 3TV2A 1GKMA 4FLCA 4APAA 2HVGA 3GZHA 1HY0A 3BHGA 1VDKA 2O7DA 2O7FA 5EYVA 1K7WA 3UNVA 1RE5A 3OCFA 1KQ7A 2PTSA 4ADMA 1Q5NA 4EFCA 1YFEA 1TJWA 4C5UA 3CZOA 1HY1A 1YFMA 2NYNA 1K62A 2PTRA 2QGAB 2VD6A 3RRPA 1J3UA 1TJVA 4C6GA 2PFMA 1FUOA 4HGVA 2RJSA 2O78A 2QVEA 1Y2MA 1U15A 2J91A 2O7BA 4ADLA 5F92A 1FUQA 2FUSA 3OCEA 3RD8A 3NO9A 2O7EA 1FUPA 3KDZA 4CQ5A 4V2QA 1TJ7A 5EYTA 1I0AA 2OHYA 5F91A 4MX2A 3KDYA 1FURA 3R6QA 4NLEA 3QBPA 2E9FA 4APBA 4V2RA 5HW2A 2O6YA 1B8FA 1AUWA 1YISA 4BAAA 1T6JA 1GKJA 1TJUA 4C5RA 1EB4A 1C3CA 3E04A 1GK3A 1GK2A 1JSWA 4EEIA 4C5SA 1W27A 3R6YA 4NSLA 1DCNA 2PTQA 3GTDA 1T6PA 1XWOA 3C8TA 4FFXA 3R6VA 4BABA 1C3UA
chains in the Genus database with same CATH superfamily
1U16A 1DOFA 2FELA 2X75A 5D6BA 4A15A 2NYFA 3NZ4A 2RJRA 2YIIA 2VL7A 3TV2A 1GKMA 4FLCA 4APAA 2HVGA 3GZHA 1HY0A 3BHGA 1VDKA 1XL8A 2O7DA 2O7FA 5EYVA 1K7WA 3UNVA 3CRVA 1XMDA 1RE5A 3OCFA 1KQ7A 2PTSA 4ADMA 1Q5NA 4EFCA 1YFEA 5H8WA 1TJWA 2FENA 4C5UA 3CZOA 1XMCA 1HY1A 1YFMA 2NYNA 1K62A 5M0JA 2PTRA 2QGAB 2VD6A 3RRPA 1J3UA 1TJVA 1XLYA 4C6GA 2PFMA 1FUOA 4WNLA 4HGVA 2RJSA 2O78A 2QVEA 1Y2MA 1U15A 5M0IA 2J91A 2O7BA 4ADLA 5F92A 1FUQA 2FUSA 3OCEA 3RD8A 2VSFA 3NO9A 2O7EA 1FUPA 3KDZA 4CQ5A 4V2QA 1TJ7A 5EYTA 1I0AA 2OHYA 5F91A 4MX2A 3KDYA 1FURA 3R6QA 4NLEA 3QBPA 2E9FA 4APBA 4V2RA 5HW2A 2O6YA 1B8FA 3CRW1 1AUWA 1XL7A 1YISA 4BAAA 1T6JA 1GKJA 1TJUA 4C5RA 1EB4A 1C3CA 3E04A 1GK3A 1GK2A 1JSWA 4EEIA 4C5SA 1W27A 3R6YA 4NSLA 1DCNA 2PTQA 3GTDA 1T6PA 1XWOA 3C8TA 4FFXA 3R6VA 4BABA 1C3UA
chains in the Genus database with same CATH topology
1U16A 1DOFA 2X75A 5D6BA 2NYFA 3NZ4A 2RJRA 2YIIA 3TV2A 1GKMA 4FLCA 4APAA 2HVGA 3GZHA 1HY0A 3BHGA 1VDKA 2O7DA 2O7FA 5EYVA 1K7WA 3UNVA 1RE5A 3OCFA 1KQ7A 2PTSA 4ADMA 1Q5NA 4EFCA 1YFEA 1TJWA 4C5UA 3CZOA 1HY1A 1YFMA 2NYNA 1K62A 2PTRA 2QGAB 2VD6A 3RRPA 1J3UA 1TJVA 4C6GA 2PFMA 1FUOA 4HGVA 2RJSA 2O78A 2QVEA 1Y2MA 1U15A 2J91A 2O7BA 4ADLA 5F92A 1FUQA 2FUSA 3OCEA 3RD8A 3NO9A 2O7EA 1FUPA 3KDZA 4CQ5A 4V2QA 1TJ7A 5EYTA 1I0AA 2OHYA 5F91A 4MX2A 3KDYA 1FURA 3R6QA 4NLEA 3QBPA 2E9FA 4APBA 4V2RA 5HW2A 2O6YA 1B8FA 1AUWA 1YISA 4BAAA 1T6JA 1GKJA 1TJUA 4C5RA 1EB4A 1C3CA 3E04A 1GK3A 1GK2A 1JSWA 4EEIA 4C5SA 1W27A 3R6YA 4NSLA 1DCNA 2PTQA 3GTDA 1T6PA 1XWOA 3C8TA 4FFXA 3R6VA 4BABA 1C3UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U16 A;  1DOF A;  2X75 A;  5D6B A;  2NYF A;  3NZ4 A;  2RJR A;  2YII A;  3TV2 A;  1GKM A;  4FLC A;  4APA A;  2HVG A;  3GZH A;  1HY0 A;  3BHG A;  1VDK A;  2O7D A;  2O7F A;  5EYV A;  1K7W A;  3UNV A;  1RE5 A;  3OCF A;  1KQ7 A;  2PTS A;  4ADM A;  1Q5N A;  4EFC A;  1YFE A;  1TJW A;  4C5U A;  3CZO A;  1HY1 A;  1YFM A;  2NYN A;  1K62 A;  2PTR A;  2QGA B;  2VD6 A;  3RRP A;  1J3U A;  1TJV A;  4C6G A;  2PFM A;  1FUO A;  4HGV A;  2RJS A;  2O78 A;  2QVE A;  1Y2M A;  1U15 A;  2J91 A;  2O7B A;  4ADL A;  5F92 A;  1FUQ A;  2FUS A;  3OCE A;  3RD8 A;  3NO9 A;  2O7E A;  1FUP A;  3KDZ A;  4CQ5 A;  4V2Q A;  1TJ7 A;  5EYT A;  1I0A A;  2OHY A;  5F91 A;  4MX2 A;  3KDY A;  1FUR A;  3R6Q A;  4NLE A;  3QBP A;  2E9F A;  4APB A;  4V2R A;  5HW2 A;  2O6Y A;  1B8F A;  1AUW A;  1YIS A;  4BAA A;  1T6J A;  1GKJ A;  1TJU A;  4C5R A;  1EB4 A;  1C3C A;  3E04 A;  1GK3 A;  1GK2 A;  1JSW A;  4EEI A;  4C5S A;  1W27 A;  3R6Y A;  4NSL A;  1DCN A;  2PTQ A;  3GTD A;  1T6P A;  1XWO A;  3C8T A;  4FFX A;  3R6V A;  4BAB A;  1C3U A; 
#chains in the Genus database with same CATH topology
 1U16 A;  1DOF A;  2FEL A;  2X75 A;  5D6B A;  4A15 A;  2NYF A;  3NZ4 A;  2RJR A;  2YII A;  2VL7 A;  3TV2 A;  1GKM A;  4FLC A;  4APA A;  2HVG A;  3GZH A;  1HY0 A;  3BHG A;  1VDK A;  1XL8 A;  2O7D A;  2O7F A;  5EYV A;  1K7W A;  3UNV A;  3CRV A;  1XMD A;  1RE5 A;  3OCF A;  1KQ7 A;  2PTS A;  4ADM A;  1Q5N A;  4EFC A;  1YFE A;  5H8W A;  1TJW A;  2FEN A;  4C5U A;  3CZO A;  1XMC A;  1HY1 A;  1YFM A;  2NYN A;  1K62 A;  5M0J A;  2PTR A;  2QGA B;  2VD6 A;  3RRP A;  1J3U A;  1TJV A;  1XLY A;  4C6G A;  2PFM A;  1FUO A;  4WNL A;  4HGV A;  2RJS A;  2O78 A;  2QVE A;  1Y2M A;  1U15 A;  5M0I A;  2J91 A;  2O7B A;  4ADL A;  5F92 A;  1FUQ A;  2FUS A;  3OCE A;  3RD8 A;  2VSF A;  3NO9 A;  2O7E A;  1FUP A;  3KDZ A;  4CQ5 A;  4V2Q A;  1TJ7 A;  5EYT A;  1I0A A;  2OHY A;  5F91 A;  4MX2 A;  3KDY A;  1FUR A;  3R6Q A;  4NLE A;  3QBP A;  2E9F A;  4APB A;  4V2R A;  5HW2 A;  2O6Y A;  1B8F A;  3CRW 1;  1AUW A;  1XL7 A;  1YIS A;  4BAA A;  1T6J A;  1GKJ A;  1TJU A;  4C5R A;  1EB4 A;  1C3C A;  3E04 A;  1GK3 A;  1GK2 A;  1JSW A;  4EEI A;  4C5S A;  1W27 A;  3R6Y A;  4NSL A;  1DCN A;  2PTQ A;  3GTD A;  1T6P A;  1XWO A;  3C8T A;  4FFX A;  3R6V A;  4BAB A;  1C3U A; 
#chains in the Genus database with same CATH homology
 1U16 A;  1DOF A;  2X75 A;  5D6B A;  2NYF A;  3NZ4 A;  2RJR A;  2YII A;  3TV2 A;  1GKM A;  4FLC A;  4APA A;  2HVG A;  3GZH A;  1HY0 A;  3BHG A;  1VDK A;  2O7D A;  2O7F A;  5EYV A;  1K7W A;  3UNV A;  1RE5 A;  3OCF A;  1KQ7 A;  2PTS A;  4ADM A;  1Q5N A;  4EFC A;  1YFE A;  1TJW A;  4C5U A;  3CZO A;  1HY1 A;  1YFM A;  2NYN A;  1K62 A;  2PTR A;  2QGA B;  2VD6 A;  3RRP A;  1J3U A;  1TJV A;  4C6G A;  2PFM A;  1FUO A;  4HGV A;  2RJS A;  2O78 A;  2QVE A;  1Y2M A;  1U15 A;  2J91 A;  2O7B A;  4ADL A;  5F92 A;  1FUQ A;  2FUS A;  3OCE A;  3RD8 A;  3NO9 A;  2O7E A;  1FUP A;  3KDZ A;  4CQ5 A;  4V2Q A;  1TJ7 A;  5EYT A;  1I0A A;  2OHY A;  5F91 A;  4MX2 A;  3KDY A;  1FUR A;  3R6Q A;  4NLE A;  3QBP A;  2E9F A;  4APB A;  4V2R A;  5HW2 A;  2O6Y A;  1B8F A;  1AUW A;  1YIS A;  4BAA A;  1T6J A;  1GKJ A;  1TJU A;  4C5R A;  1EB4 A;  1C3C A;  3E04 A;  1GK3 A;  1GK2 A;  1JSW A;  4EEI A;  4C5S A;  1W27 A;  3R6Y A;  4NSL A;  1DCN A;  2PTQ A;  3GTD A;  1T6P A;  1XWO A;  3C8T A;  4FFX A;  3R6V A;  4BAB A;  1C3U A; 
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