3CZOA

Crystal structure of double mutant phenylalanine ammonia-lyase from anabaena variabilis
Total Genus 189
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
189
sequence length
537
structure length
536
Chain Sequence
NVIIGNQKLTINDVARVARNGTLVSLTNNTDILQGIQASCDYINNAVESGEPIYGVTSGFGGMANVAISREQASELQTNLVWFLKTGAGNKLPLADVRAAMLLRANSHMRGASGIRLELIKRMEIFLNAGVTPYVYEFGSIGDLVPLSYITGSLIGLDPSFKVDFNGKEMDAPTALRQLNLSPLTLLPKEGLAMMNGTSVMTGIAANCVYDTQILTAIAMGVHALDIQALNGTNQSFHPFIHNSKPHPGQLWAADQMISLLANSQLVRDELDGKHDYRDHELIQDRYSLRCLPQYLGPIVDGISQIAKQIEIEINSVTDNPLIDVDNQASYHGGNFLGQYVGMGMDHLRYYIGLLAKHLDVQIALLASPEFSNGLPPSLLGNRERKVNMGLKGLQICGNSIMPLLTFYGNSIADRFPTHAEQFNQNINSQGYTSATLARRSVDIFQNYVAIALMFGVQAVDLRTYKKTGHYDARASLSPATERLYSAVRHVVGQKPTSDRPYIWNDNEQGLDEHIARISADIAAGGVIVQAVQDIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords Histidine ammonia-lyase
publication title Structural and biochemical characterization of the therapeutic Anabaena variabilis phenylalanine ammonia lyase.
pubmed doi rcsb
source organism Anabaena variabilis
total genus 189
structure length 536
sequence length 537
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.24: Phenylalanine ammonia-lyase.
pdb deposition date 2008-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3czoA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3czoA02
2PTRA 1GKJA 3CZOA 2PTQA 2O7DA 4FLCA 1TJ7A 3TV2A 1VDKA 4C6GA 3E04A 3BHGA 4C5SA 1FURA 1HY0A 4ADLA 3QBPA 2OHYA 3NZ4A 2QGAB 2YIIA 4NLEA 3C8TA 4V2QA 3RRPA 1DOFA 4APAA 4EFCA 1FUQA 5EYTA 1W27A 1U16A 4FFXA 4HGVA 1XWOA 2E9FA 1KQ7A 3GZHA 1YFMA 2RJRA 1TJVA 2PFMA 2O78A 4C5UA 3UNVA 3GTDA 4V2RA 4APBA 2NYNA 1I0AA 1T6PA 1GK3A 4BAAA 1YISA 4BABA 2X75A 3OCEA 2NYFA 1GK2A 4C5RA 2VD6A 1U15A 1RE5A 5HW2A 1B8FA 2PTSA 4EEIA 3KDZA 5F92A 1GKMA 3OCFA 1K62A 1T6JA 1J3UA 4NSLA 2O6YA 5D6BA 4MX2A 1C3CA 3RD8A 1EB4A 1FUPA 2HVGA 1Y2MA 1Q5NA 1HY1A 4ADMA 1C3UA 2FUSA 3R6YA 3R6VA 2O7BA 3NO9A 1DCNA 1TJWA 1AUWA 1JSWA 1FUOA 3R6QA 3KDYA 2J91A 4CQ5A 2RJSA 2O7FA 1TJUA 1K7WA 2QVEA 1YFEA 2O7EA 5F91A 5EYVA
chains in the Genus database with same CATH superfamily
2PTRA 1GKJA 3CZOA 2PTQA 2O7DA 4FLCA 1TJ7A 4WNLA 3TV2A 1VDKA 4C6GA 3E04A 3BHGA 3CRW1 4C5SA 1FURA 1HY0A 4ADLA 3QBPA 2OHYA 3NZ4A 2QGAB 2YIIA 4NLEA 3C8TA 4V2QA 3RRPA 1DOFA 4APAA 4EFCA 1XL8A 1FUQA 4A15A 5EYTA 1W27A 1U16A 4FFXA 4HGVA 1XWOA 2E9FA 1KQ7A 1XMDA 3GZHA 1YFMA 2FENA 2RJRA 1TJVA 2PFMA 2O78A 4C5UA 3UNVA 3GTDA 4V2RA 4APBA 2NYNA 1I0AA 1T6PA 1GK3A 1XL7A 4BAAA 1YISA 4BABA 2X75A 3OCEA 2NYFA 1GK2A 4C5RA 2VD6A 5M0IA 1XMCA 1U15A 1RE5A 5HW2A 1B8FA 2FELA 2PTSA 4EEIA 3KDZA 5F92A 1GKMA 1XLYA 3OCFA 1K62A 1T6JA 1J3UA 4NSLA 2O6YA 5D6BA 2VSFA 1C3CA 4MX2A 3CRVA 3RD8A 1EB4A 1FUPA 5H8WA 2HVGA 1Y2MA 1Q5NA 1HY1A 4ADMA 1C3UA 2FUSA 3R6YA 3R6VA 2O7BA 3NO9A 1DCNA 1TJWA 1AUWA 1JSWA 1FUOA 3R6QA 3KDYA 2J91A 4CQ5A 5M0JA 2RJSA 2VL7A 2O7FA 1TJUA 1K7WA 2QVEA 1YFEA 2O7EA 5F91A 5EYVA
chains in the Genus database with same CATH topology
2PTRA 1GKJA 3CZOA 2PTQA 2O7DA 4FLCA 1TJ7A 3TV2A 1VDKA 4C6GA 3E04A 3BHGA 4C5SA 1FURA 1HY0A 4ADLA 3QBPA 2OHYA 3NZ4A 2QGAB 2YIIA 4NLEA 3C8TA 4V2QA 3RRPA 1DOFA 4APAA 4EFCA 1FUQA 5EYTA 1W27A 1U16A 4FFXA 4HGVA 1XWOA 2E9FA 1KQ7A 3GZHA 1YFMA 2RJRA 1TJVA 2PFMA 2O78A 4C5UA 3UNVA 3GTDA 4V2RA 4APBA 2NYNA 1I0AA 1T6PA 1GK3A 4BAAA 1YISA 4BABA 2X75A 3OCEA 2NYFA 1GK2A 4C5RA 2VD6A 1U15A 1RE5A 5HW2A 1B8FA 2PTSA 4EEIA 3KDZA 5F92A 1GKMA 3OCFA 1K62A 1T6JA 1J3UA 4NSLA 2O6YA 5D6BA 4MX2A 1C3CA 3RD8A 1EB4A 1FUPA 2HVGA 1Y2MA 1Q5NA 1HY1A 4ADMA 1C3UA 2FUSA 3R6YA 3R6VA 2O7BA 3NO9A 1DCNA 1TJWA 1AUWA 1JSWA 1FUOA 3R6QA 3KDYA 2J91A 4CQ5A 2RJSA 2O7FA 1TJUA 1K7WA 2QVEA 1YFEA 2O7EA 5F91A 5EYVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PTR A;  1GKJ A;  3CZO A;  2PTQ A;  2O7D A;  4FLC A;  1TJ7 A;  3TV2 A;  1VDK A;  4C6G A;  3E04 A;  3BHG A;  4C5S A;  1FUR A;  1HY0 A;  4ADL A;  3QBP A;  2OHY A;  3NZ4 A;  2QGA B;  2YII A;  4NLE A;  3C8T A;  4V2Q A;  3RRP A;  1DOF A;  4APA A;  4EFC A;  1FUQ A;  5EYT A;  1W27 A;  1U16 A;  4FFX A;  4HGV A;  1XWO A;  2E9F A;  1KQ7 A;  3GZH A;  1YFM A;  2RJR A;  1TJV A;  2PFM A;  2O78 A;  4C5U A;  3UNV A;  3GTD A;  4V2R A;  4APB A;  2NYN A;  1I0A A;  1T6P A;  1GK3 A;  4BAA A;  1YIS A;  4BAB A;  2X75 A;  3OCE A;  2NYF A;  1GK2 A;  4C5R A;  2VD6 A;  1U15 A;  1RE5 A;  5HW2 A;  1B8F A;  2PTS A;  4EEI A;  3KDZ A;  5F92 A;  1GKM A;  3OCF A;  1K62 A;  1T6J A;  1J3U A;  4NSL A;  2O6Y A;  5D6B A;  4MX2 A;  1C3C A;  3RD8 A;  1EB4 A;  1FUP A;  2HVG A;  1Y2M A;  1Q5N A;  1HY1 A;  4ADM A;  1C3U A;  2FUS A;  3R6Y A;  3R6V A;  2O7B A;  3NO9 A;  1DCN A;  1TJW A;  1AUW A;  1JSW A;  1FUO A;  3R6Q A;  3KDY A;  2J91 A;  4CQ5 A;  2RJS A;  2O7F A;  1TJU A;  1K7W A;  2QVE A;  1YFE A;  2O7E A;  5F91 A;  5EYV A; 
#chains in the Genus database with same CATH topology
 2PTR A;  1GKJ A;  3CZO A;  2PTQ A;  2O7D A;  4FLC A;  1TJ7 A;  4WNL A;  3TV2 A;  1VDK A;  4C6G A;  3E04 A;  3BHG A;  3CRW 1;  4C5S A;  1FUR A;  1HY0 A;  4ADL A;  3QBP A;  2OHY A;  3NZ4 A;  2QGA B;  2YII A;  4NLE A;  3C8T A;  4V2Q A;  3RRP A;  1DOF A;  4APA A;  4EFC A;  1XL8 A;  1FUQ A;  4A15 A;  5EYT A;  1W27 A;  1U16 A;  4FFX A;  4HGV A;  1XWO A;  2E9F A;  1KQ7 A;  1XMD A;  3GZH A;  1YFM A;  2FEN A;  2RJR A;  1TJV A;  2PFM A;  2O78 A;  4C5U A;  3UNV A;  3GTD A;  4V2R A;  4APB A;  2NYN A;  1I0A A;  1T6P A;  1GK3 A;  1XL7 A;  4BAA A;  1YIS A;  4BAB A;  2X75 A;  3OCE A;  2NYF A;  1GK2 A;  4C5R A;  2VD6 A;  5M0I A;  1XMC A;  1U15 A;  1RE5 A;  5HW2 A;  1B8F A;  2FEL A;  2PTS A;  4EEI A;  3KDZ A;  5F92 A;  1GKM A;  1XLY A;  3OCF A;  1K62 A;  1T6J A;  1J3U A;  4NSL A;  2O6Y A;  5D6B A;  2VSF A;  1C3C A;  4MX2 A;  3CRV A;  3RD8 A;  1EB4 A;  1FUP A;  5H8W A;  2HVG A;  1Y2M A;  1Q5N A;  1HY1 A;  4ADM A;  1C3U A;  2FUS A;  3R6Y A;  3R6V A;  2O7B A;  3NO9 A;  1DCN A;  1TJW A;  1AUW A;  1JSW A;  1FUO A;  3R6Q A;  3KDY A;  2J91 A;  4CQ5 A;  5M0J A;  2RJS A;  2VL7 A;  2O7F A;  1TJU A;  1K7W A;  2QVE A;  1YFE A;  2O7E A;  5F91 A;  5EYV A; 
#chains in the Genus database with same CATH homology
 2PTR A;  1GKJ A;  3CZO A;  2PTQ A;  2O7D A;  4FLC A;  1TJ7 A;  3TV2 A;  1VDK A;  4C6G A;  3E04 A;  3BHG A;  4C5S A;  1FUR A;  1HY0 A;  4ADL A;  3QBP A;  2OHY A;  3NZ4 A;  2QGA B;  2YII A;  4NLE A;  3C8T A;  4V2Q A;  3RRP A;  1DOF A;  4APA A;  4EFC A;  1FUQ A;  5EYT A;  1W27 A;  1U16 A;  4FFX A;  4HGV A;  1XWO A;  2E9F A;  1KQ7 A;  3GZH A;  1YFM A;  2RJR A;  1TJV A;  2PFM A;  2O78 A;  4C5U A;  3UNV A;  3GTD A;  4V2R A;  4APB A;  2NYN A;  1I0A A;  1T6P A;  1GK3 A;  4BAA A;  1YIS A;  4BAB A;  2X75 A;  3OCE A;  2NYF A;  1GK2 A;  4C5R A;  2VD6 A;  1U15 A;  1RE5 A;  5HW2 A;  1B8F A;  2PTS A;  4EEI A;  3KDZ A;  5F92 A;  1GKM A;  3OCF A;  1K62 A;  1T6J A;  1J3U A;  4NSL A;  2O6Y A;  5D6B A;  4MX2 A;  1C3C A;  3RD8 A;  1EB4 A;  1FUP A;  2HVG A;  1Y2M A;  1Q5N A;  1HY1 A;  4ADM A;  1C3U A;  2FUS A;  3R6Y A;  3R6V A;  2O7B A;  3NO9 A;  1DCN A;  1TJW A;  1AUW A;  1JSW A;  1FUO A;  3R6Q A;  3KDY A;  2J91 A;  4CQ5 A;  2RJS A;  2O7F A;  1TJU A;  1K7W A;  2QVE A;  1YFE A;  2O7E A;  5F91 A;  5EYV A; 
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