3CZOA

Crystal structure of double mutant phenylalanine ammonia-lyase from anabaena variabilis
Total Genus 189
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
189
sequence length
537
structure length
536
Chain Sequence
NVIIGNQKLTINDVARVARNGTLVSLTNNTDILQGIQASCDYINNAVESGEPIYGVTSGFGGMANVAISREQASELQTNLVWFLKTGAGNKLPLADVRAAMLLRANSHMRGASGIRLELIKRMEIFLNAGVTPYVYEFGSIGDLVPLSYITGSLIGLDPSFKVDFNGKEMDAPTALRQLNLSPLTLLPKEGLAMMNGTSVMTGIAANCVYDTQILTAIAMGVHALDIQALNGTNQSFHPFIHNSKPHPGQLWAADQMISLLANSQLVRDELDGKHDYRDHELIQDRYSLRCLPQYLGPIVDGISQIAKQIEIEINSVTDNPLIDVDNQASYHGGNFLGQYVGMGMDHLRYYIGLLAKHLDVQIALLASPEFSNGLPPSLLGNRERKVNMGLKGLQICGNSIMPLLTFYGNSIADRFPTHAEQFNQNINSQGYTSATLARRSVDIFQNYVAIALMFGVQAVDLRTYKKTGHYDARASLSPATERLYSAVRHVVGQKPTSDRPYIWNDNEQGLDEHIARISADIAAGGVIVQAVQDIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
source organism Anabaena variabilis
publication title Structural and biochemical characterization of the therapeutic Anabaena variabilis phenylalanine ammonia lyase.
pubmed doi rcsb
molecule keywords Histidine ammonia-lyase
total genus 189
structure length 536
sequence length 537
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.24: Phenylalanine ammonia-lyase.
pdb deposition date 2008-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3czoA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3czoA02
3R6VA 4ADMA 3QBPA 5EYTA 4APAA 1GK2A 2YIIA 5HW2A 1TJVA 1I0AA 1W27A 2NYFA 4CQ5A 2O78A 4EEIA 2RJSA 1FUQA 1GK3A 1T6PA 4ADLA 1VDKA 4BABA 3GTDA 2J91A 3KDYA 2PFMA 1HY1A 1TJWA 3TV2A 3UNVA 3CZOA 4FLCA 2O7EA 1DCNA 2O6YA 3OCEA 2PTQA 4EFCA 4V2QA 1K7WA 3R6QA 3OCFA 2O7DA 1YISA 1HY0A 4NSLA 3NO9A 3E04A 1K62A 1J3UA 1JSWA 4BAAA 1B8FA 2X75A 1YFMA 2O7BA 1FUOA 1Q5NA 1U15A 1TJUA 2QVEA 2VD6A 4HGVA 5D6BA 4C5RA 1C3CA 4C6GA 3KDZA 3GZHA 1XWOA 1RE5A 2PTSA 2QGAB 2RJRA 1FURA 3BHGA 1GKMA 1FUPA 2NYNA 4NLEA 4MX2A 1T6JA 4FFXA 1KQ7A 1DOFA 1YFEA 1EB4A 2HVGA 1AUWA 4C5SA 1C3UA 5F92A 2FUSA 4C5UA 2O7FA 4APBA 1TJ7A 3R6YA 5F91A 3RRPA 1Y2MA 3NZ4A 4V2RA 1GKJA 3RD8A 2PTRA 3C8TA 1U16A 5EYVA 2OHYA 2E9FA
chains in the Genus database with same CATH superfamily
3R6VA 4ADMA 3QBPA 5EYTA 4APAA 1GK2A 2YIIA 5HW2A 1TJVA 1I0AA 1W27A 2NYFA 4CQ5A 2O78A 4EEIA 2RJSA 1FUQA 1GK3A 1T6PA 4ADLA 1VDKA 4BABA 3GTDA 3CRVA 2J91A 3KDYA 2PFMA 1HY1A 4WNLA 1TJWA 3TV2A 3UNVA 3CZOA 4FLCA 2O7EA 1DCNA 2FELA 2FENA 2O6YA 3OCEA 2PTQA 4EFCA 4V2QA 1K7WA 3R6QA 3OCFA 2O7DA 1YISA 1HY0A 2VSFA 4NSLA 3NO9A 3E04A 1K62A 1J3UA 1JSWA 4BAAA 1B8FA 2X75A 1YFMA 2O7BA 1FUOA 1Q5NA 1U15A 1XL8A 1TJUA 2QVEA 2VD6A 5M0JA 4HGVA 1XMDA 5D6BA 5M0IA 4C5RA 1C3CA 4C6GA 3KDZA 3GZHA 1XWOA 1RE5A 1XL7A 2PTSA 2QGAB 2RJRA 1FURA 1XMCA 4A15A 3BHGA 5H8WA 1GKMA 1FUPA 2NYNA 4NLEA 4MX2A 1T6JA 4FFXA 1KQ7A 2VL7A 1DOFA 1YFEA 1XLYA 1EB4A 2HVGA 1AUWA 4C5SA 1C3UA 5F92A 2FUSA 4C5UA 2O7FA 3CRW1 4APBA 1TJ7A 3R6YA 5F91A 3RRPA 1Y2MA 3NZ4A 4V2RA 1GKJA 3RD8A 2PTRA 3C8TA 1U16A 5EYVA 2OHYA 2E9FA
chains in the Genus database with same CATH topology
3R6VA 4ADMA 3QBPA 5EYTA 4APAA 1GK2A 2YIIA 5HW2A 1TJVA 1I0AA 1W27A 2NYFA 4CQ5A 2O78A 4EEIA 2RJSA 1FUQA 1GK3A 1T6PA 4ADLA 1VDKA 4BABA 3GTDA 2J91A 3KDYA 2PFMA 1HY1A 1TJWA 3TV2A 3UNVA 3CZOA 4FLCA 2O7EA 1DCNA 2O6YA 3OCEA 2PTQA 4EFCA 4V2QA 1K7WA 3R6QA 3OCFA 2O7DA 1YISA 1HY0A 4NSLA 3NO9A 3E04A 1K62A 1J3UA 1JSWA 4BAAA 1B8FA 2X75A 1YFMA 2O7BA 1FUOA 1Q5NA 1U15A 1TJUA 2QVEA 2VD6A 4HGVA 5D6BA 4C5RA 1C3CA 4C6GA 3KDZA 3GZHA 1XWOA 1RE5A 2PTSA 2QGAB 2RJRA 1FURA 3BHGA 1GKMA 1FUPA 2NYNA 4NLEA 4MX2A 1T6JA 4FFXA 1KQ7A 1DOFA 1YFEA 1EB4A 2HVGA 1AUWA 4C5SA 1C3UA 5F92A 2FUSA 4C5UA 2O7FA 4APBA 1TJ7A 3R6YA 5F91A 3RRPA 1Y2MA 3NZ4A 4V2RA 1GKJA 3RD8A 2PTRA 3C8TA 1U16A 5EYVA 2OHYA 2E9FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3R6V A;  4ADM A;  3QBP A;  5EYT A;  4APA A;  1GK2 A;  2YII A;  5HW2 A;  1TJV A;  1I0A A;  1W27 A;  2NYF A;  4CQ5 A;  2O78 A;  4EEI A;  2RJS A;  1FUQ A;  1GK3 A;  1T6P A;  4ADL A;  1VDK A;  4BAB A;  3GTD A;  2J91 A;  3KDY A;  2PFM A;  1HY1 A;  1TJW A;  3TV2 A;  3UNV A;  3CZO A;  4FLC A;  2O7E A;  1DCN A;  2O6Y A;  3OCE A;  2PTQ A;  4EFC A;  4V2Q A;  1K7W A;  3R6Q A;  3OCF A;  2O7D A;  1YIS A;  1HY0 A;  4NSL A;  3NO9 A;  3E04 A;  1K62 A;  1J3U A;  1JSW A;  4BAA A;  1B8F A;  2X75 A;  1YFM A;  2O7B A;  1FUO A;  1Q5N A;  1U15 A;  1TJU A;  2QVE A;  2VD6 A;  4HGV A;  5D6B A;  4C5R A;  1C3C A;  4C6G A;  3KDZ A;  3GZH A;  1XWO A;  1RE5 A;  2PTS A;  2QGA B;  2RJR A;  1FUR A;  3BHG A;  1GKM A;  1FUP A;  2NYN A;  4NLE A;  4MX2 A;  1T6J A;  4FFX A;  1KQ7 A;  1DOF A;  1YFE A;  1EB4 A;  2HVG A;  1AUW A;  4C5S A;  1C3U A;  5F92 A;  2FUS A;  4C5U A;  2O7F A;  4APB A;  1TJ7 A;  3R6Y A;  5F91 A;  3RRP A;  1Y2M A;  3NZ4 A;  4V2R A;  1GKJ A;  3RD8 A;  2PTR A;  3C8T A;  1U16 A;  5EYV A;  2OHY A;  2E9F A; 
#chains in the Genus database with same CATH topology
 3R6V A;  4ADM A;  3QBP A;  5EYT A;  4APA A;  1GK2 A;  2YII A;  5HW2 A;  1TJV A;  1I0A A;  1W27 A;  2NYF A;  4CQ5 A;  2O78 A;  4EEI A;  2RJS A;  1FUQ A;  1GK3 A;  1T6P A;  4ADL A;  1VDK A;  4BAB A;  3GTD A;  3CRV A;  2J91 A;  3KDY A;  2PFM A;  1HY1 A;  4WNL A;  1TJW A;  3TV2 A;  3UNV A;  3CZO A;  4FLC A;  2O7E A;  1DCN A;  2FEL A;  2FEN A;  2O6Y A;  3OCE A;  2PTQ A;  4EFC A;  4V2Q A;  1K7W A;  3R6Q A;  3OCF A;  2O7D A;  1YIS A;  1HY0 A;  2VSF A;  4NSL A;  3NO9 A;  3E04 A;  1K62 A;  1J3U A;  1JSW A;  4BAA A;  1B8F A;  2X75 A;  1YFM A;  2O7B A;  1FUO A;  1Q5N A;  1U15 A;  1XL8 A;  1TJU A;  2QVE A;  2VD6 A;  5M0J A;  4HGV A;  1XMD A;  5D6B A;  5M0I A;  4C5R A;  1C3C A;  4C6G A;  3KDZ A;  3GZH A;  1XWO A;  1RE5 A;  1XL7 A;  2PTS A;  2QGA B;  2RJR A;  1FUR A;  1XMC A;  4A15 A;  3BHG A;  5H8W A;  1GKM A;  1FUP A;  2NYN A;  4NLE A;  4MX2 A;  1T6J A;  4FFX A;  1KQ7 A;  2VL7 A;  1DOF A;  1YFE A;  1XLY A;  1EB4 A;  2HVG A;  1AUW A;  4C5S A;  1C3U A;  5F92 A;  2FUS A;  4C5U A;  2O7F A;  3CRW 1;  4APB A;  1TJ7 A;  3R6Y A;  5F91 A;  3RRP A;  1Y2M A;  3NZ4 A;  4V2R A;  1GKJ A;  3RD8 A;  2PTR A;  3C8T A;  1U16 A;  5EYV A;  2OHY A;  2E9F A; 
#chains in the Genus database with same CATH homology
 3R6V A;  4ADM A;  3QBP A;  5EYT A;  4APA A;  1GK2 A;  2YII A;  5HW2 A;  1TJV A;  1I0A A;  1W27 A;  2NYF A;  4CQ5 A;  2O78 A;  4EEI A;  2RJS A;  1FUQ A;  1GK3 A;  1T6P A;  4ADL A;  1VDK A;  4BAB A;  3GTD A;  2J91 A;  3KDY A;  2PFM A;  1HY1 A;  1TJW A;  3TV2 A;  3UNV A;  3CZO A;  4FLC A;  2O7E A;  1DCN A;  2O6Y A;  3OCE A;  2PTQ A;  4EFC A;  4V2Q A;  1K7W A;  3R6Q A;  3OCF A;  2O7D A;  1YIS A;  1HY0 A;  4NSL A;  3NO9 A;  3E04 A;  1K62 A;  1J3U A;  1JSW A;  4BAA A;  1B8F A;  2X75 A;  1YFM A;  2O7B A;  1FUO A;  1Q5N A;  1U15 A;  1TJU A;  2QVE A;  2VD6 A;  4HGV A;  5D6B A;  4C5R A;  1C3C A;  4C6G A;  3KDZ A;  3GZH A;  1XWO A;  1RE5 A;  2PTS A;  2QGA B;  2RJR A;  1FUR A;  3BHG A;  1GKM A;  1FUP A;  2NYN A;  4NLE A;  4MX2 A;  1T6J A;  4FFX A;  1KQ7 A;  1DOF A;  1YFE A;  1EB4 A;  2HVG A;  1AUW A;  4C5S A;  1C3U A;  5F92 A;  2FUS A;  4C5U A;  2O7F A;  4APB A;  1TJ7 A;  3R6Y A;  5F91 A;  3RRP A;  1Y2M A;  3NZ4 A;  4V2R A;  1GKJ A;  3RD8 A;  2PTR A;  3C8T A;  1U16 A;  5EYV A;  2OHY A;  2E9F A; 
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