2O6YA

Tyrosine ammonia-lyase from rhodobacter sphaeroides
Total Genus 194
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
194
sequence length
515
structure length
514
Chain Sequence
PKPAVELDRHIDLDQAHAVASGGARIVLAPPARDRCRASEARLGAVIREARHVYGLTTGFGPLANRLISGENVRTLQANLVHHLASGVGPVLDWTTARAMVLARLVSIAQGASGASEGTIARLIDLLNSELAPAVPSRGTVGDLTPLAHMVLCLQGRGDFLDRDGTRLDGAEGLRRGRLQPLDLSHRDALALVNGTSAMTGIALVNAHACRHLGNWAVALTALLAECLRGRTEAWAAALSDLRPHPGQKDAAARLRARVDGSARVVRHVIAERRLDAGDIGTEPEAGQDAYSLRCAPQVLGAGFDTLAWHDRVLTIELNAVTDNPVFPPDGSVPALHGGNFMGQHVALTSDALATAVTVLAGLAERQIARLTDERLNRGLPPFLHRGPAGLNSGFMGAQVTATALLAEMRATGPASIHSISTNAANQDVVSLGTIAARLCREKIDRWAEILAILALCLAQAAELRCGSGLDGVSPAGKKLVQALREQFPPLETDRPLGQEIAALATHLLQQSPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Putative histidine ammonia-lyase
publication title Structural determinants and modulation of substrate specificity in phenylalanine-tyrosine ammonia-lyases.
pubmed doi rcsb
source organism Rhodobacter sphaeroides
total genus 194
structure length 514
sequence length 515
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 4.3.1.23: Tyrosine ammonia-lyase.
pdb deposition date 2006-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2o6yA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2o6yA02
5D6BA 1J3UA 4C5RA 4C6GA 1YFMA 2YIIA 1DOFA 3OCEA 3NZ4A 2O78A 3R6YA 3KDZA 1TJVA 4BAAA 3E04A 3RRPA 4BABA 3NO9A 2O7BA 1HY1A 1TJUA 1TJ7A 4FFXA 4V2QA 2HVGA 1GK3A 5HW2A 1FUPA 4V2RA 2PTSA 1FUQA 2PTRA 1W27A 1JSWA 1YFEA 2PFMA 2RJSA 4NLEA 1YISA 1I0AA 2NYFA 2VD6A 1Y2MA 2NYNA 2E9FA 1T6JA 4FLCA 3C8TA 3RD8A 5EYTA 1C3CA 3UNVA 2O7FA 2PTQA 4HGVA 1C3UA 3TV2A 1K7WA 1U15A 4EEIA 1DCNA 2OHYA 5F91A 1U16A 2FUSA 1FURA 3GTDA 3KDYA 2O7EA 1GKMA 1RE5A 3OCFA 4APBA 1T6PA 2RJRA 2J91A 3GZHA 4APAA 1HY0A 4ADLA 1GK2A 4NSLA 4C5UA 2O7DA 4MX2A 3R6QA 3QBPA 1GKJA 4CQ5A 1TJWA 1AUWA 2O6YA 5EYVA 1B8FA 1EB4A 1FUOA 1VDKA 3R6VA 1Q5NA 2QVEA 4ADMA 3BHGA 5F92A 2X75A 1KQ7A 3CZOA 4EFCA 2QGAB 4C5SA 1K62A 1XWOA
chains in the Genus database with same CATH superfamily
5D6BA 1J3UA 4C5RA 4C6GA 1YFMA 2YIIA 1DOFA 3OCEA 3NZ4A 2O78A 3R6YA 3KDZA 1TJVA 4BAAA 3E04A 3RRPA 1XL7A 4BABA 3NO9A 2O7BA 1HY1A 1TJUA 1TJ7A 4FFXA 4V2QA 2HVGA 1GK3A 5HW2A 1FUPA 4V2RA 2PTSA 1FUQA 2PTRA 1W27A 1JSWA 1YFEA 2PFMA 2RJSA 4NLEA 5H8WA 1YISA 1I0AA 2NYFA 2VD6A 1Y2MA 2NYNA 2FENA 5M0JA 2E9FA 1T6JA 4A15A 4FLCA 3C8TA 3RD8A 5EYTA 4WNLA 1C3CA 3UNVA 2O7FA 2PTQA 2VSFA 1XMCA 4HGVA 1C3UA 3TV2A 1K7WA 1U15A 4EEIA 1DCNA 2OHYA 5F91A 1U16A 2FUSA 1FURA 3GTDA 3KDYA 2O7EA 1GKMA 1RE5A 3OCFA 4APBA 1T6PA 2RJRA 2J91A 3GZHA 4APAA 1HY0A 4ADLA 1GK2A 4NSLA 4C5UA 2O7DA 3CRVA 1XMDA 4MX2A 3R6QA 3QBPA 1GKJA 2FELA 4CQ5A 1TJWA 1AUWA 2O6YA 5EYVA 1B8FA 5M0IA 1EB4A 3CRW1 1FUOA 1VDKA 3R6VA 1Q5NA 2QVEA 4ADMA 3BHGA 5F92A 2X75A 1KQ7A 3CZOA 1XL8A 4EFCA 2QGAB 4C5SA 1K62A 2VL7A 1XLYA 1XWOA
chains in the Genus database with same CATH topology
5D6BA 1J3UA 4C5RA 4C6GA 1YFMA 2YIIA 1DOFA 3OCEA 3NZ4A 2O78A 3R6YA 3KDZA 1TJVA 4BAAA 3E04A 3RRPA 4BABA 3NO9A 2O7BA 1HY1A 1TJUA 1TJ7A 4FFXA 4V2QA 2HVGA 1GK3A 5HW2A 1FUPA 4V2RA 2PTSA 1FUQA 2PTRA 1W27A 1JSWA 1YFEA 2PFMA 2RJSA 4NLEA 1YISA 1I0AA 2NYFA 2VD6A 1Y2MA 2NYNA 2E9FA 1T6JA 4FLCA 3C8TA 3RD8A 5EYTA 1C3CA 3UNVA 2O7FA 2PTQA 4HGVA 1C3UA 3TV2A 1K7WA 1U15A 4EEIA 1DCNA 2OHYA 5F91A 1U16A 2FUSA 1FURA 3GTDA 3KDYA 2O7EA 1GKMA 1RE5A 3OCFA 4APBA 1T6PA 2RJRA 2J91A 3GZHA 4APAA 1HY0A 4ADLA 1GK2A 4NSLA 4C5UA 2O7DA 4MX2A 3R6QA 3QBPA 1GKJA 4CQ5A 1TJWA 1AUWA 2O6YA 5EYVA 1B8FA 1EB4A 1FUOA 1VDKA 3R6VA 1Q5NA 2QVEA 4ADMA 3BHGA 5F92A 2X75A 1KQ7A 3CZOA 4EFCA 2QGAB 4C5SA 1K62A 1XWOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5D6B A;  1J3U A;  4C5R A;  4C6G A;  1YFM A;  2YII A;  1DOF A;  3OCE A;  3NZ4 A;  2O78 A;  3R6Y A;  3KDZ A;  1TJV A;  4BAA A;  3E04 A;  3RRP A;  4BAB A;  3NO9 A;  2O7B A;  1HY1 A;  1TJU A;  1TJ7 A;  4FFX A;  4V2Q A;  2HVG A;  1GK3 A;  5HW2 A;  1FUP A;  4V2R A;  2PTS A;  1FUQ A;  2PTR A;  1W27 A;  1JSW A;  1YFE A;  2PFM A;  2RJS A;  4NLE A;  1YIS A;  1I0A A;  2NYF A;  2VD6 A;  1Y2M A;  2NYN A;  2E9F A;  1T6J A;  4FLC A;  3C8T A;  3RD8 A;  5EYT A;  1C3C A;  3UNV A;  2O7F A;  2PTQ A;  4HGV A;  1C3U A;  3TV2 A;  1K7W A;  1U15 A;  4EEI A;  1DCN A;  2OHY A;  5F91 A;  1U16 A;  2FUS A;  1FUR A;  3GTD A;  3KDY A;  2O7E A;  1GKM A;  1RE5 A;  3OCF A;  4APB A;  1T6P A;  2RJR A;  2J91 A;  3GZH A;  4APA A;  1HY0 A;  4ADL A;  1GK2 A;  4NSL A;  4C5U A;  2O7D A;  4MX2 A;  3R6Q A;  3QBP A;  1GKJ A;  4CQ5 A;  1TJW A;  1AUW A;  2O6Y A;  5EYV A;  1B8F A;  1EB4 A;  1FUO A;  1VDK A;  3R6V A;  1Q5N A;  2QVE A;  4ADM A;  3BHG A;  5F92 A;  2X75 A;  1KQ7 A;  3CZO A;  4EFC A;  2QGA B;  4C5S A;  1K62 A;  1XWO A; 
#chains in the Genus database with same CATH topology
 5D6B A;  1J3U A;  4C5R A;  4C6G A;  1YFM A;  2YII A;  1DOF A;  3OCE A;  3NZ4 A;  2O78 A;  3R6Y A;  3KDZ A;  1TJV A;  4BAA A;  3E04 A;  3RRP A;  1XL7 A;  4BAB A;  3NO9 A;  2O7B A;  1HY1 A;  1TJU A;  1TJ7 A;  4FFX A;  4V2Q A;  2HVG A;  1GK3 A;  5HW2 A;  1FUP A;  4V2R A;  2PTS A;  1FUQ A;  2PTR A;  1W27 A;  1JSW A;  1YFE A;  2PFM A;  2RJS A;  4NLE A;  5H8W A;  1YIS A;  1I0A A;  2NYF A;  2VD6 A;  1Y2M A;  2NYN A;  2FEN A;  5M0J A;  2E9F A;  1T6J A;  4A15 A;  4FLC A;  3C8T A;  3RD8 A;  5EYT A;  4WNL A;  1C3C A;  3UNV A;  2O7F A;  2PTQ A;  2VSF A;  1XMC A;  4HGV A;  1C3U A;  3TV2 A;  1K7W A;  1U15 A;  4EEI A;  1DCN A;  2OHY A;  5F91 A;  1U16 A;  2FUS A;  1FUR A;  3GTD A;  3KDY A;  2O7E A;  1GKM A;  1RE5 A;  3OCF A;  4APB A;  1T6P A;  2RJR A;  2J91 A;  3GZH A;  4APA A;  1HY0 A;  4ADL A;  1GK2 A;  4NSL A;  4C5U A;  2O7D A;  3CRV A;  1XMD A;  4MX2 A;  3R6Q A;  3QBP A;  1GKJ A;  2FEL A;  4CQ5 A;  1TJW A;  1AUW A;  2O6Y A;  5EYV A;  1B8F A;  5M0I A;  1EB4 A;  3CRW 1;  1FUO A;  1VDK A;  3R6V A;  1Q5N A;  2QVE A;  4ADM A;  3BHG A;  5F92 A;  2X75 A;  1KQ7 A;  3CZO A;  1XL8 A;  4EFC A;  2QGA B;  4C5S A;  1K62 A;  2VL7 A;  1XLY A;  1XWO A; 
#chains in the Genus database with same CATH homology
 5D6B A;  1J3U A;  4C5R A;  4C6G A;  1YFM A;  2YII A;  1DOF A;  3OCE A;  3NZ4 A;  2O78 A;  3R6Y A;  3KDZ A;  1TJV A;  4BAA A;  3E04 A;  3RRP A;  4BAB A;  3NO9 A;  2O7B A;  1HY1 A;  1TJU A;  1TJ7 A;  4FFX A;  4V2Q A;  2HVG A;  1GK3 A;  5HW2 A;  1FUP A;  4V2R A;  2PTS A;  1FUQ A;  2PTR A;  1W27 A;  1JSW A;  1YFE A;  2PFM A;  2RJS A;  4NLE A;  1YIS A;  1I0A A;  2NYF A;  2VD6 A;  1Y2M A;  2NYN A;  2E9F A;  1T6J A;  4FLC A;  3C8T A;  3RD8 A;  5EYT A;  1C3C A;  3UNV A;  2O7F A;  2PTQ A;  4HGV A;  1C3U A;  3TV2 A;  1K7W A;  1U15 A;  4EEI A;  1DCN A;  2OHY A;  5F91 A;  1U16 A;  2FUS A;  1FUR A;  3GTD A;  3KDY A;  2O7E A;  1GKM A;  1RE5 A;  3OCF A;  4APB A;  1T6P A;  2RJR A;  2J91 A;  3GZH A;  4APA A;  1HY0 A;  4ADL A;  1GK2 A;  4NSL A;  4C5U A;  2O7D A;  4MX2 A;  3R6Q A;  3QBP A;  1GKJ A;  4CQ5 A;  1TJW A;  1AUW A;  2O6Y A;  5EYV A;  1B8F A;  1EB4 A;  1FUO A;  1VDK A;  3R6V A;  1Q5N A;  2QVE A;  4ADM A;  3BHG A;  5F92 A;  2X75 A;  1KQ7 A;  3CZO A;  4EFC A;  2QGA B;  4C5S A;  1K62 A;  1XWO A; 
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