2RJSA

Sgtam bound to substrate mimic
Total Genus 198
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
198
sequence length
526
structure length
525
Chain Sequence
PVSVDGETLTVEAVRRVAEERATVDVPAESIAKAQKSREIFEGIAEQNIPIYGVTTGYGEMIYMQVDKSKEVELQTNLVRSHSAGVGPLFAEDEARAIVAARLNTLAKGHSAVRPIILERLAQYLNEGITPAIPEIGSLGDLAPLSHVASTLIGEGYVLRDGRPVETAQVLAERGIEPLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEAVRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRRELQKDKEAGKDVQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLFFEGKEIFHGANFHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSGDPGLHSGFAGAQYPATALVAENRTIGPASTQSVPSNGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAAAQAVDISGRFDGLSPAAKATYEAVRRLVPTLGVDRYMADDIELVADALSRGEFLRAIARETDIQLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords Tyrosine aminomutase
publication title Design and characterization of mechanism-based inhibitors for the tyrosine aminomutase SgTAM.
pubmed doi rcsb
source organism Streptomyces globisporus
total genus 198
structure length 525
sequence length 526
chains with identical sequence B
ec nomenclature ec 4.3.1.23: Tyrosine ammonia-lyase.
pdb deposition date 2007-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2rjsA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2rjsA02
3BHGA 1FUQA 1VDKA 2QGAB 1FURA 2O7FA 3R6YA 3QBPA 1T6PA 1FUPA 4HGVA 3R6VA 4APBA 5F92A 1GKMA 3KDYA 3R6QA 4C5RA 2PTRA 1GK2A 1AUWA 3NZ4A 1YFEA 1XWOA 1Y2MA 3GTDA 4EFCA 3OCEA 1W27A 1B8FA 1YISA 2PTQA 2OHYA 1K7WA 3KDZA 1Q5NA 1TJWA 2RJRA 2RJSA 3C8TA 4BABA 4C5SA 2J91A 2NYFA 3E04A 4C5UA 1JSWA 2YIIA 1DOFA 2HVGA 5EYVA 1TJUA 1K62A 1RE5A 2O7DA 1TJVA 1DCNA 2O78A 1TJ7A 5F91A 4EEIA 3CZOA 1T6JA 2O7EA 3OCFA 1C3UA 1U15A 1J3UA 2X75A 2NYNA 4NSLA 2QVEA 1HY1A 1GKJA 1FUOA 3RD8A 1HY0A 2FUSA 1YFMA 3GZHA 5D6BA 2VD6A 4V2QA 4NLEA 2PTSA 5EYTA 3NO9A 1EB4A 1U16A 5HW2A 4FFXA 1I0AA 4APAA 3TV2A 2PFMA 1KQ7A 4ADMA 1GK3A 4MX2A 4C6GA 1C3CA 4FLCA 4BAAA 3UNVA 2O6YA 4CQ5A 4ADLA 4V2RA 3RRPA 2E9FA 2O7BA
chains in the Genus database with same CATH superfamily
3BHGA 1FUQA 1VDKA 2QGAB 1FURA 2O7FA 3R6YA 3QBPA 1T6PA 1FUPA 4HGVA 3R6VA 4APBA 5F92A 1GKMA 3KDYA 5H8WA 3R6QA 4C5RA 2PTRA 1GK2A 1AUWA 3NZ4A 1YFEA 1XWOA 1Y2MA 3GTDA 4EFCA 3OCEA 1W27A 1B8FA 1YISA 1XMDA 2PTQA 2OHYA 1K7WA 3KDZA 1Q5NA 1TJWA 2RJRA 2RJSA 3CRVA 3C8TA 4BABA 4C5SA 2J91A 2NYFA 3E04A 4C5UA 1JSWA 2VSFA 5M0JA 2YIIA 1DOFA 2HVGA 5EYVA 1TJUA 1K62A 1RE5A 2O7DA 1TJVA 1DCNA 2O78A 4A15A 1TJ7A 5F91A 4EEIA 3CZOA 1T6JA 2O7EA 1XMCA 1XL7A 3OCFA 1C3UA 1XL8A 1U15A 1J3UA 2X75A 2NYNA 4NSLA 2FENA 2FELA 1XLYA 2QVEA 1HY1A 1GKJA 1FUOA 5M0IA 3RD8A 1HY0A 2FUSA 3CRW1 1YFMA 3GZHA 5D6BA 2VD6A 4V2QA 4NLEA 2PTSA 5EYTA 3NO9A 1EB4A 1U16A 5HW2A 4FFXA 1I0AA 4APAA 3TV2A 2PFMA 1KQ7A 4ADMA 1GK3A 4MX2A 4WNLA 4C6GA 1C3CA 4FLCA 4BAAA 3UNVA 2O6YA 4CQ5A 2VL7A 4ADLA 4V2RA 3RRPA 2E9FA 2O7BA
chains in the Genus database with same CATH topology
3BHGA 1FUQA 1VDKA 2QGAB 1FURA 2O7FA 3R6YA 3QBPA 1T6PA 1FUPA 4HGVA 3R6VA 4APBA 5F92A 1GKMA 3KDYA 3R6QA 4C5RA 2PTRA 1GK2A 1AUWA 3NZ4A 1YFEA 1XWOA 1Y2MA 3GTDA 4EFCA 3OCEA 1W27A 1B8FA 1YISA 2PTQA 2OHYA 1K7WA 3KDZA 1Q5NA 1TJWA 2RJRA 2RJSA 3C8TA 4BABA 4C5SA 2J91A 2NYFA 3E04A 4C5UA 1JSWA 2YIIA 1DOFA 2HVGA 5EYVA 1TJUA 1K62A 1RE5A 2O7DA 1TJVA 1DCNA 2O78A 1TJ7A 5F91A 4EEIA 3CZOA 1T6JA 2O7EA 3OCFA 1C3UA 1U15A 1J3UA 2X75A 2NYNA 4NSLA 2QVEA 1HY1A 1GKJA 1FUOA 3RD8A 1HY0A 2FUSA 1YFMA 3GZHA 5D6BA 2VD6A 4V2QA 4NLEA 2PTSA 5EYTA 3NO9A 1EB4A 1U16A 5HW2A 4FFXA 1I0AA 4APAA 3TV2A 2PFMA 1KQ7A 4ADMA 1GK3A 4MX2A 4C6GA 1C3CA 4FLCA 4BAAA 3UNVA 2O6YA 4CQ5A 4ADLA 4V2RA 3RRPA 2E9FA 2O7BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BHG A;  1FUQ A;  1VDK A;  2QGA B;  1FUR A;  2O7F A;  3R6Y A;  3QBP A;  1T6P A;  1FUP A;  4HGV A;  3R6V A;  4APB A;  5F92 A;  1GKM A;  3KDY A;  3R6Q A;  4C5R A;  2PTR A;  1GK2 A;  1AUW A;  3NZ4 A;  1YFE A;  1XWO A;  1Y2M A;  3GTD A;  4EFC A;  3OCE A;  1W27 A;  1B8F A;  1YIS A;  2PTQ A;  2OHY A;  1K7W A;  3KDZ A;  1Q5N A;  1TJW A;  2RJR A;  2RJS A;  3C8T A;  4BAB A;  4C5S A;  2J91 A;  2NYF A;  3E04 A;  4C5U A;  1JSW A;  2YII A;  1DOF A;  2HVG A;  5EYV A;  1TJU A;  1K62 A;  1RE5 A;  2O7D A;  1TJV A;  1DCN A;  2O78 A;  1TJ7 A;  5F91 A;  4EEI A;  3CZO A;  1T6J A;  2O7E A;  3OCF A;  1C3U A;  1U15 A;  1J3U A;  2X75 A;  2NYN A;  4NSL A;  2QVE A;  1HY1 A;  1GKJ A;  1FUO A;  3RD8 A;  1HY0 A;  2FUS A;  1YFM A;  3GZH A;  5D6B A;  2VD6 A;  4V2Q A;  4NLE A;  2PTS A;  5EYT A;  3NO9 A;  1EB4 A;  1U16 A;  5HW2 A;  4FFX A;  1I0A A;  4APA A;  3TV2 A;  2PFM A;  1KQ7 A;  4ADM A;  1GK3 A;  4MX2 A;  4C6G A;  1C3C A;  4FLC A;  4BAA A;  3UNV A;  2O6Y A;  4CQ5 A;  4ADL A;  4V2R A;  3RRP A;  2E9F A;  2O7B A; 
#chains in the Genus database with same CATH topology
 3BHG A;  1FUQ A;  1VDK A;  2QGA B;  1FUR A;  2O7F A;  3R6Y A;  3QBP A;  1T6P A;  1FUP A;  4HGV A;  3R6V A;  4APB A;  5F92 A;  1GKM A;  3KDY A;  5H8W A;  3R6Q A;  4C5R A;  2PTR A;  1GK2 A;  1AUW A;  3NZ4 A;  1YFE A;  1XWO A;  1Y2M A;  3GTD A;  4EFC A;  3OCE A;  1W27 A;  1B8F A;  1YIS A;  1XMD A;  2PTQ A;  2OHY A;  1K7W A;  3KDZ A;  1Q5N A;  1TJW A;  2RJR A;  2RJS A;  3CRV A;  3C8T A;  4BAB A;  4C5S A;  2J91 A;  2NYF A;  3E04 A;  4C5U A;  1JSW A;  2VSF A;  5M0J A;  2YII A;  1DOF A;  2HVG A;  5EYV A;  1TJU A;  1K62 A;  1RE5 A;  2O7D A;  1TJV A;  1DCN A;  2O78 A;  4A15 A;  1TJ7 A;  5F91 A;  4EEI A;  3CZO A;  1T6J A;  2O7E A;  1XMC A;  1XL7 A;  3OCF A;  1C3U A;  1XL8 A;  1U15 A;  1J3U A;  2X75 A;  2NYN A;  4NSL A;  2FEN A;  2FEL A;  1XLY A;  2QVE A;  1HY1 A;  1GKJ A;  1FUO A;  5M0I A;  3RD8 A;  1HY0 A;  2FUS A;  3CRW 1;  1YFM A;  3GZH A;  5D6B A;  2VD6 A;  4V2Q A;  4NLE A;  2PTS A;  5EYT A;  3NO9 A;  1EB4 A;  1U16 A;  5HW2 A;  4FFX A;  1I0A A;  4APA A;  3TV2 A;  2PFM A;  1KQ7 A;  4ADM A;  1GK3 A;  4MX2 A;  4WNL A;  4C6G A;  1C3C A;  4FLC A;  4BAA A;  3UNV A;  2O6Y A;  4CQ5 A;  2VL7 A;  4ADL A;  4V2R A;  3RRP A;  2E9F A;  2O7B A; 
#chains in the Genus database with same CATH homology
 3BHG A;  1FUQ A;  1VDK A;  2QGA B;  1FUR A;  2O7F A;  3R6Y A;  3QBP A;  1T6P A;  1FUP A;  4HGV A;  3R6V A;  4APB A;  5F92 A;  1GKM A;  3KDY A;  3R6Q A;  4C5R A;  2PTR A;  1GK2 A;  1AUW A;  3NZ4 A;  1YFE A;  1XWO A;  1Y2M A;  3GTD A;  4EFC A;  3OCE A;  1W27 A;  1B8F A;  1YIS A;  2PTQ A;  2OHY A;  1K7W A;  3KDZ A;  1Q5N A;  1TJW A;  2RJR A;  2RJS A;  3C8T A;  4BAB A;  4C5S A;  2J91 A;  2NYF A;  3E04 A;  4C5U A;  1JSW A;  2YII A;  1DOF A;  2HVG A;  5EYV A;  1TJU A;  1K62 A;  1RE5 A;  2O7D A;  1TJV A;  1DCN A;  2O78 A;  1TJ7 A;  5F91 A;  4EEI A;  3CZO A;  1T6J A;  2O7E A;  3OCF A;  1C3U A;  1U15 A;  1J3U A;  2X75 A;  2NYN A;  4NSL A;  2QVE A;  1HY1 A;  1GKJ A;  1FUO A;  3RD8 A;  1HY0 A;  2FUS A;  1YFM A;  3GZH A;  5D6B A;  2VD6 A;  4V2Q A;  4NLE A;  2PTS A;  5EYT A;  3NO9 A;  1EB4 A;  1U16 A;  5HW2 A;  4FFX A;  1I0A A;  4APA A;  3TV2 A;  2PFM A;  1KQ7 A;  4ADM A;  1GK3 A;  4MX2 A;  4C6G A;  1C3C A;  4FLC A;  4BAA A;  3UNV A;  2O6Y A;  4CQ5 A;  4ADL A;  4V2R A;  3RRP A;  2E9F A;  2O7B A; 
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