2O7DA

Tyrosine ammonia-lyase from rhodobacter sphaeroides, complexed with caffeate
Total Genus 193
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
193
sequence length
515
structure length
514
Chain Sequence
PKPAVELDRHIDLDQAHAVASGGARIVLAPPARDRCRASEARLGAVIREARHVYGLTTGFGPLANRLISGENVRTLQANLVHHLASGVGPVLDWTTARAMVLARLVSIAQGASGASEGTIARLIDLLNSELAPAVPSRGTVGDLTPLAHMVLCLQGRGDFLDRDGTRLDGAEGLRRGRLQPLDLSHRDALALVNGTSAMTGIALVNAHACRHLGNWAVALTALLAECLRGRTEAWAAALSDLRPHPGQKDAAARLRARVDGSARVVRHVIAERRLDAGDIGTEPEAGQDAYSLRCAPQVLGAGFDTLAWHDRVLTIELNAVTDNPVFPPDGSVPALHGGNFMGQHVALTSDALATAVTVLAGLAERQIARLTDERLNRGLPPFLHRGPAGLNSGFMGAQVTATALLAEMRATGPASIHSISTNAANQDVVSLGTIAARLCREKIDRWAEILAILALCLAQAAELRCGSGLDGVSPAGKKLVQALREQFPPLETDRPLGQEIAALATHLLQQSPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Putative histidine ammonia-lyase
publication title Structural determinants and modulation of substrate specificity in phenylalanine-tyrosine ammonia-lyases.
pubmed doi rcsb
source organism Rhodobacter sphaeroides
total genus 193
structure length 514
sequence length 515
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 4.3.1.23: Tyrosine ammonia-lyase.
pdb deposition date 2006-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2o7dA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2o7dA02
2O78A 2O6YA 3RRPA 1TJWA 2PTSA 4FFXA 1YISA 4C5SA 4ADLA 2E9FA 5F92A 2NYFA 2O7FA 1Y2MA 2FUSA 1B8FA 2X75A 1XWOA 2J91A 4HGVA 1C3CA 1K7WA 3GTDA 1YFEA 1FUOA 4ADMA 4FLCA 1DOFA 1FUPA 3R6YA 2PTRA 1JSWA 1RE5A 3E04A 4EFCA 1HY0A 4V2RA 1GK2A 1HY1A 1C3UA 5EYTA 3C8TA 1DCNA 1T6JA 1EB4A 1U15A 3OCEA 1Q5NA 3R6VA 3CZOA 4NLEA 2QVEA 1W27A 3KDZA 2O7DA 4MX2A 4BABA 4V2QA 1TJUA 3KDYA 1TJVA 1VDKA 1AUWA 2NYNA 1KQ7A 2RJRA 1TJ7A 2YIIA 5EYVA 2RJSA 2OHYA 1I0AA 3RD8A 1YFMA 4APBA 3QBPA 1K62A 2HVGA 4BAAA 5D6BA 1GKJA 2O7EA 3TV2A 1FURA 2O7BA 2PTQA 2QGAB 4C5UA 1J3UA 5F91A 3NO9A 1FUQA 1T6PA 4EEIA 2VD6A 4C6GA 1GK3A 3R6QA 4NSLA 2PFMA 3NZ4A 3UNVA 4APAA 4CQ5A 4C5RA 3OCFA 1GKMA 1U16A 5HW2A 3BHGA 3GZHA
chains in the Genus database with same CATH superfamily
2O78A 2O6YA 1XLYA 3RRPA 1TJWA 2PTSA 4FFXA 1YISA 4C5SA 2E9FA 4ADLA 5F92A 2NYFA 2O7FA 1Y2MA 2FUSA 1B8FA 2X75A 1XWOA 2J91A 1XMDA 4HGVA 1C3CA 1K7WA 3GTDA 1YFEA 1FUOA 4ADMA 4FLCA 3GZHA 1DOFA 1FUPA 3R6YA 2PTRA 1JSWA 1RE5A 2VL7A 3E04A 4EFCA 4V2RA 1GK2A 1HY1A 4WNLA 1C3UA 5EYTA 3C8TA 1DCNA 1T6JA 1EB4A 1U15A 3OCEA 1Q5NA 3R6VA 3CZOA 4NLEA 2QVEA 1W27A 3KDZA 2O7DA 4MX2A 4BABA 4V2QA 1TJUA 3KDYA 1XMCA 4A15A 5M0IA 1TJVA 1VDKA 1AUWA 2NYNA 1KQ7A 2RJRA 1XL7A 1TJ7A 2YIIA 5EYVA 2RJSA 2OHYA 1I0AA 3RD8A 1YFMA 4APBA 2FELA 1K62A 3QBPA 2HVGA 4BAAA 5D6BA 1GKJA 2O7EA 3TV2A 1FURA 2O7BA 2PTQA 2QGAB 4C5UA 1J3UA 5F91A 3NO9A 2VSFA 3CRVA 1FUQA 1T6PA 4EEIA 2VD6A 5M0JA 4C6GA 5H8WA 1GK3A 3R6QA 3CRW1 4NSLA 2PFMA 1XL8A 3NZ4A 2FENA 3UNVA 4APAA 4CQ5A 4C5RA 3OCFA 1GKMA 1U16A 5HW2A 3BHGA 1HY0A
chains in the Genus database with same CATH topology
2O78A 2O6YA 3RRPA 1TJWA 2PTSA 4FFXA 1YISA 4C5SA 4ADLA 2E9FA 5F92A 2NYFA 2O7FA 1Y2MA 2FUSA 1B8FA 2X75A 1XWOA 2J91A 4HGVA 1C3CA 1K7WA 3GTDA 1YFEA 1FUOA 4ADMA 4FLCA 1DOFA 1FUPA 3R6YA 2PTRA 1JSWA 1RE5A 3E04A 4EFCA 1HY0A 4V2RA 1GK2A 1HY1A 1C3UA 5EYTA 3C8TA 1DCNA 1T6JA 1EB4A 1U15A 3OCEA 1Q5NA 3R6VA 3CZOA 4NLEA 2QVEA 1W27A 3KDZA 2O7DA 4MX2A 4BABA 4V2QA 1TJUA 3KDYA 1TJVA 1VDKA 1AUWA 2NYNA 1KQ7A 2RJRA 1TJ7A 2YIIA 5EYVA 2RJSA 2OHYA 1I0AA 3RD8A 1YFMA 4APBA 3QBPA 1K62A 2HVGA 4BAAA 5D6BA 1GKJA 2O7EA 3TV2A 1FURA 2O7BA 2PTQA 2QGAB 4C5UA 1J3UA 5F91A 3NO9A 1FUQA 1T6PA 4EEIA 2VD6A 4C6GA 1GK3A 3R6QA 4NSLA 2PFMA 3NZ4A 3UNVA 4APAA 4CQ5A 4C5RA 3OCFA 1GKMA 1U16A 5HW2A 3BHGA 3GZHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O78 A;  2O6Y A;  3RRP A;  1TJW A;  2PTS A;  4FFX A;  1YIS A;  4C5S A;  4ADL A;  2E9F A;  5F92 A;  2NYF A;  2O7F A;  1Y2M A;  2FUS A;  1B8F A;  2X75 A;  1XWO A;  2J91 A;  4HGV A;  1C3C A;  1K7W A;  3GTD A;  1YFE A;  1FUO A;  4ADM A;  4FLC A;  1DOF A;  1FUP A;  3R6Y A;  2PTR A;  1JSW A;  1RE5 A;  3E04 A;  4EFC A;  1HY0 A;  4V2R A;  1GK2 A;  1HY1 A;  1C3U A;  5EYT A;  3C8T A;  1DCN A;  1T6J A;  1EB4 A;  1U15 A;  3OCE A;  1Q5N A;  3R6V A;  3CZO A;  4NLE A;  2QVE A;  1W27 A;  3KDZ A;  2O7D A;  4MX2 A;  4BAB A;  4V2Q A;  1TJU A;  3KDY A;  1TJV A;  1VDK A;  1AUW A;  2NYN A;  1KQ7 A;  2RJR A;  1TJ7 A;  2YII A;  5EYV A;  2RJS A;  2OHY A;  1I0A A;  3RD8 A;  1YFM A;  4APB A;  3QBP A;  1K62 A;  2HVG A;  4BAA A;  5D6B A;  1GKJ A;  2O7E A;  3TV2 A;  1FUR A;  2O7B A;  2PTQ A;  2QGA B;  4C5U A;  1J3U A;  5F91 A;  3NO9 A;  1FUQ A;  1T6P A;  4EEI A;  2VD6 A;  4C6G A;  1GK3 A;  3R6Q A;  4NSL A;  2PFM A;  3NZ4 A;  3UNV A;  4APA A;  4CQ5 A;  4C5R A;  3OCF A;  1GKM A;  1U16 A;  5HW2 A;  3BHG A;  3GZH A; 
#chains in the Genus database with same CATH topology
 2O78 A;  2O6Y A;  1XLY A;  3RRP A;  1TJW A;  2PTS A;  4FFX A;  1YIS A;  4C5S A;  2E9F A;  4ADL A;  5F92 A;  2NYF A;  2O7F A;  1Y2M A;  2FUS A;  1B8F A;  2X75 A;  1XWO A;  2J91 A;  1XMD A;  4HGV A;  1C3C A;  1K7W A;  3GTD A;  1YFE A;  1FUO A;  4ADM A;  4FLC A;  3GZH A;  1DOF A;  1FUP A;  3R6Y A;  2PTR A;  1JSW A;  1RE5 A;  2VL7 A;  3E04 A;  4EFC A;  4V2R A;  1GK2 A;  1HY1 A;  4WNL A;  1C3U A;  5EYT A;  3C8T A;  1DCN A;  1T6J A;  1EB4 A;  1U15 A;  3OCE A;  1Q5N A;  3R6V A;  3CZO A;  4NLE A;  2QVE A;  1W27 A;  3KDZ A;  2O7D A;  4MX2 A;  4BAB A;  4V2Q A;  1TJU A;  3KDY A;  1XMC A;  4A15 A;  5M0I A;  1TJV A;  1VDK A;  1AUW A;  2NYN A;  1KQ7 A;  2RJR A;  1XL7 A;  1TJ7 A;  2YII A;  5EYV A;  2RJS A;  2OHY A;  1I0A A;  3RD8 A;  1YFM A;  4APB A;  2FEL A;  1K62 A;  3QBP A;  2HVG A;  4BAA A;  5D6B A;  1GKJ A;  2O7E A;  3TV2 A;  1FUR A;  2O7B A;  2PTQ A;  2QGA B;  4C5U A;  1J3U A;  5F91 A;  3NO9 A;  2VSF A;  3CRV A;  1FUQ A;  1T6P A;  4EEI A;  2VD6 A;  5M0J A;  4C6G A;  5H8W A;  1GK3 A;  3R6Q A;  3CRW 1;  4NSL A;  2PFM A;  1XL8 A;  3NZ4 A;  2FEN A;  3UNV A;  4APA A;  4CQ5 A;  4C5R A;  3OCF A;  1GKM A;  1U16 A;  5HW2 A;  3BHG A;  1HY0 A; 
#chains in the Genus database with same CATH homology
 2O78 A;  2O6Y A;  3RRP A;  1TJW A;  2PTS A;  4FFX A;  1YIS A;  4C5S A;  4ADL A;  2E9F A;  5F92 A;  2NYF A;  2O7F A;  1Y2M A;  2FUS A;  1B8F A;  2X75 A;  1XWO A;  2J91 A;  4HGV A;  1C3C A;  1K7W A;  3GTD A;  1YFE A;  1FUO A;  4ADM A;  4FLC A;  1DOF A;  1FUP A;  3R6Y A;  2PTR A;  1JSW A;  1RE5 A;  3E04 A;  4EFC A;  1HY0 A;  4V2R A;  1GK2 A;  1HY1 A;  1C3U A;  5EYT A;  3C8T A;  1DCN A;  1T6J A;  1EB4 A;  1U15 A;  3OCE A;  1Q5N A;  3R6V A;  3CZO A;  4NLE A;  2QVE A;  1W27 A;  3KDZ A;  2O7D A;  4MX2 A;  4BAB A;  4V2Q A;  1TJU A;  3KDY A;  1TJV A;  1VDK A;  1AUW A;  2NYN A;  1KQ7 A;  2RJR A;  1TJ7 A;  2YII A;  5EYV A;  2RJS A;  2OHY A;  1I0A A;  3RD8 A;  1YFM A;  4APB A;  3QBP A;  1K62 A;  2HVG A;  4BAA A;  5D6B A;  1GKJ A;  2O7E A;  3TV2 A;  1FUR A;  2O7B A;  2PTQ A;  2QGA B;  4C5U A;  1J3U A;  5F91 A;  3NO9 A;  1FUQ A;  1T6P A;  4EEI A;  2VD6 A;  4C6G A;  1GK3 A;  3R6Q A;  4NSL A;  2PFM A;  3NZ4 A;  3UNV A;  4APA A;  4CQ5 A;  4C5R A;  3OCF A;  1GKM A;  1U16 A;  5HW2 A;  3BHG A;  3GZH A; 
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