2O7DA

Tyrosine ammonia-lyase from rhodobacter sphaeroides, complexed with caffeate
Total Genus 193
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
193
sequence length
515
structure length
514
Chain Sequence
PKPAVELDRHIDLDQAHAVASGGARIVLAPPARDRCRASEARLGAVIREARHVYGLTTGFGPLANRLISGENVRTLQANLVHHLASGVGPVLDWTTARAMVLARLVSIAQGASGASEGTIARLIDLLNSELAPAVPSRGTVGDLTPLAHMVLCLQGRGDFLDRDGTRLDGAEGLRRGRLQPLDLSHRDALALVNGTSAMTGIALVNAHACRHLGNWAVALTALLAECLRGRTEAWAAALSDLRPHPGQKDAAARLRARVDGSARVVRHVIAERRLDAGDIGTEPEAGQDAYSLRCAPQVLGAGFDTLAWHDRVLTIELNAVTDNPVFPPDGSVPALHGGNFMGQHVALTSDALATAVTVLAGLAERQIARLTDERLNRGLPPFLHRGPAGLNSGFMGAQVTATALLAEMRATGPASIHSISTNAANQDVVSLGTIAARLCREKIDRWAEILAILALCLAQAAELRCGSGLDGVSPAGKKLVQALREQFPPLETDRPLGQEIAALATHLLQQSPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Putative histidine ammonia-lyase
publication title Structural determinants and modulation of substrate specificity in phenylalanine-tyrosine ammonia-lyases.
pubmed doi rcsb
source organism Rhodobacter sphaeroides
total genus 193
structure length 514
sequence length 515
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 4.3.1.23: Tyrosine ammonia-lyase.
pdb deposition date 2006-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2o7dA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2o7dA02
2O7BA 3RRPA 2NYFA 4APAA 1TJWA 1HY0A 1U15A 1Y2MA 1FUQA 2O7FA 3RD8A 3QBPA 4C5SA 5EYTA 1K7WA 1K62A 4ADLA 1YFEA 3OCEA 4C5UA 4HGVA 2NYNA 1U16A 1DCNA 4FLCA 5HW2A 4C5RA 3BHGA 2PTRA 2PTQA 1HY1A 3C8TA 1T6JA 4NSLA 5F92A 2O6YA 2QGAB 1GKJA 1XWOA 4NLEA 5EYVA 4BABA 4EFCA 3NZ4A 5D6BA 2FUSA 1EB4A 3GZHA 2J91A 1C3UA 3R6YA 1FUOA 2O78A 5F91A 2PTSA 2X75A 2O7EA 2RJRA 1J3UA 1T6PA 1GKMA 1RE5A 4BAAA 4ADMA 4V2QA 2O7DA 1TJVA 2E9FA 3KDYA 1VDKA 2QVEA 4CQ5A 1YFMA 2PFMA 1YISA 2VD6A 1Q5NA 1FURA 1GK2A 1W27A 4MX2A 3UNVA 1AUWA 4FFXA 1B8FA 2OHYA 1DOFA 1KQ7A 3OCFA 3NO9A 3GTDA 2YIIA 1TJUA 1C3CA 3E04A 4EEIA 3R6QA 3TV2A 1I0AA 4APBA 4C6GA 3KDZA 1JSWA 1TJ7A 2RJSA 1FUPA 4V2RA 2HVGA 3CZOA 1GK3A 3R6VA
chains in the Genus database with same CATH superfamily
2O7BA 3RRPA 2NYFA 4APAA 1TJWA 4A15A 1HY0A 1U15A 1Y2MA 1FUQA 2O7FA 3RD8A 3QBPA 4C5SA 5EYTA 2FENA 1K7WA 1K62A 4ADLA 1YFEA 3OCEA 4C5UA 4HGVA 2NYNA 1U16A 1DCNA 4FLCA 5HW2A 4WNLA 4C5RA 3BHGA 2PTRA 2PTQA 1HY1A 3CRVA 3C8TA 1T6JA 4NSLA 5F92A 5H8WA 1XMDA 2O6YA 2QGAB 1GKJA 1XWOA 2VSFA 4NLEA 5EYVA 4BABA 4EFCA 3NZ4A 5D6BA 2FUSA 2VL7A 1EB4A 3GZHA 2J91A 1C3UA 3R6YA 1FUOA 2O78A 5F91A 2PTSA 2X75A 2O7EA 2RJRA 1J3UA 1T6PA 1GKMA 1RE5A 4BAAA 4ADMA 4V2QA 2O7DA 1TJVA 2E9FA 3KDYA 1VDKA 2QVEA 1XL7A 4CQ5A 1YFMA 2FELA 2PFMA 1YISA 2VD6A 1Q5NA 1FURA 1GK2A 1W27A 4MX2A 3UNVA 1AUWA 4FFXA 1B8FA 2OHYA 1DOFA 1KQ7A 3NO9A 3OCFA 1XMCA 3GTDA 2YIIA 1XLYA 1TJUA 1C3CA 3E04A 5M0JA 4EEIA 3R6QA 3TV2A 1I0AA 4APBA 4C6GA 3KDZA 3CRW1 1JSWA 1TJ7A 5M0IA 2RJSA 1XL8A 1FUPA 4V2RA 2HVGA 3CZOA 1GK3A 3R6VA
chains in the Genus database with same CATH topology
2O7BA 3RRPA 2NYFA 4APAA 1TJWA 1HY0A 1U15A 1Y2MA 1FUQA 2O7FA 3RD8A 3QBPA 4C5SA 5EYTA 1K7WA 1K62A 4ADLA 1YFEA 3OCEA 4C5UA 4HGVA 2NYNA 1U16A 1DCNA 4FLCA 5HW2A 4C5RA 3BHGA 2PTRA 2PTQA 1HY1A 3C8TA 1T6JA 4NSLA 5F92A 2O6YA 2QGAB 1GKJA 1XWOA 4NLEA 5EYVA 4BABA 4EFCA 3NZ4A 5D6BA 2FUSA 1EB4A 3GZHA 2J91A 1C3UA 3R6YA 1FUOA 2O78A 5F91A 2PTSA 2X75A 2O7EA 2RJRA 1J3UA 1T6PA 1GKMA 1RE5A 4BAAA 4ADMA 4V2QA 2O7DA 1TJVA 2E9FA 3KDYA 1VDKA 2QVEA 4CQ5A 1YFMA 2PFMA 1YISA 2VD6A 1Q5NA 1FURA 1GK2A 1W27A 4MX2A 3UNVA 1AUWA 4FFXA 1B8FA 2OHYA 1DOFA 1KQ7A 3OCFA 3NO9A 3GTDA 2YIIA 1TJUA 1C3CA 3E04A 4EEIA 3R6QA 3TV2A 1I0AA 4APBA 4C6GA 3KDZA 1JSWA 1TJ7A 2RJSA 1FUPA 4V2RA 2HVGA 3CZOA 1GK3A 3R6VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O7B A;  3RRP A;  2NYF A;  4APA A;  1TJW A;  1HY0 A;  1U15 A;  1Y2M A;  1FUQ A;  2O7F A;  3RD8 A;  3QBP A;  4C5S A;  5EYT A;  1K7W A;  1K62 A;  4ADL A;  1YFE A;  3OCE A;  4C5U A;  4HGV A;  2NYN A;  1U16 A;  1DCN A;  4FLC A;  5HW2 A;  4C5R A;  3BHG A;  2PTR A;  2PTQ A;  1HY1 A;  3C8T A;  1T6J A;  4NSL A;  5F92 A;  2O6Y A;  2QGA B;  1GKJ A;  1XWO A;  4NLE A;  5EYV A;  4BAB A;  4EFC A;  3NZ4 A;  5D6B A;  2FUS A;  1EB4 A;  3GZH A;  2J91 A;  1C3U A;  3R6Y A;  1FUO A;  2O78 A;  5F91 A;  2PTS A;  2X75 A;  2O7E A;  2RJR A;  1J3U A;  1T6P A;  1GKM A;  1RE5 A;  4BAA A;  4ADM A;  4V2Q A;  2O7D A;  1TJV A;  2E9F A;  3KDY A;  1VDK A;  2QVE A;  4CQ5 A;  1YFM A;  2PFM A;  1YIS A;  2VD6 A;  1Q5N A;  1FUR A;  1GK2 A;  1W27 A;  4MX2 A;  3UNV A;  1AUW A;  4FFX A;  1B8F A;  2OHY A;  1DOF A;  1KQ7 A;  3OCF A;  3NO9 A;  3GTD A;  2YII A;  1TJU A;  1C3C A;  3E04 A;  4EEI A;  3R6Q A;  3TV2 A;  1I0A A;  4APB A;  4C6G A;  3KDZ A;  1JSW A;  1TJ7 A;  2RJS A;  1FUP A;  4V2R A;  2HVG A;  3CZO A;  1GK3 A;  3R6V A; 
#chains in the Genus database with same CATH topology
 2O7B A;  3RRP A;  2NYF A;  4APA A;  1TJW A;  4A15 A;  1HY0 A;  1U15 A;  1Y2M A;  1FUQ A;  2O7F A;  3RD8 A;  3QBP A;  4C5S A;  5EYT A;  2FEN A;  1K7W A;  1K62 A;  4ADL A;  1YFE A;  3OCE A;  4C5U A;  4HGV A;  2NYN A;  1U16 A;  1DCN A;  4FLC A;  5HW2 A;  4WNL A;  4C5R A;  3BHG A;  2PTR A;  2PTQ A;  1HY1 A;  3CRV A;  3C8T A;  1T6J A;  4NSL A;  5F92 A;  5H8W A;  1XMD A;  2O6Y A;  2QGA B;  1GKJ A;  1XWO A;  2VSF A;  4NLE A;  5EYV A;  4BAB A;  4EFC A;  3NZ4 A;  5D6B A;  2FUS A;  2VL7 A;  1EB4 A;  3GZH A;  2J91 A;  1C3U A;  3R6Y A;  1FUO A;  2O78 A;  5F91 A;  2PTS A;  2X75 A;  2O7E A;  2RJR A;  1J3U A;  1T6P A;  1GKM A;  1RE5 A;  4BAA A;  4ADM A;  4V2Q A;  2O7D A;  1TJV A;  2E9F A;  3KDY A;  1VDK A;  2QVE A;  1XL7 A;  4CQ5 A;  1YFM A;  2FEL A;  2PFM A;  1YIS A;  2VD6 A;  1Q5N A;  1FUR A;  1GK2 A;  1W27 A;  4MX2 A;  3UNV A;  1AUW A;  4FFX A;  1B8F A;  2OHY A;  1DOF A;  1KQ7 A;  3NO9 A;  3OCF A;  1XMC A;  3GTD A;  2YII A;  1XLY A;  1TJU A;  1C3C A;  3E04 A;  5M0J A;  4EEI A;  3R6Q A;  3TV2 A;  1I0A A;  4APB A;  4C6G A;  3KDZ A;  3CRW 1;  1JSW A;  1TJ7 A;  5M0I A;  2RJS A;  1XL8 A;  1FUP A;  4V2R A;  2HVG A;  3CZO A;  1GK3 A;  3R6V A; 
#chains in the Genus database with same CATH homology
 2O7B A;  3RRP A;  2NYF A;  4APA A;  1TJW A;  1HY0 A;  1U15 A;  1Y2M A;  1FUQ A;  2O7F A;  3RD8 A;  3QBP A;  4C5S A;  5EYT A;  1K7W A;  1K62 A;  4ADL A;  1YFE A;  3OCE A;  4C5U A;  4HGV A;  2NYN A;  1U16 A;  1DCN A;  4FLC A;  5HW2 A;  4C5R A;  3BHG A;  2PTR A;  2PTQ A;  1HY1 A;  3C8T A;  1T6J A;  4NSL A;  5F92 A;  2O6Y A;  2QGA B;  1GKJ A;  1XWO A;  4NLE A;  5EYV A;  4BAB A;  4EFC A;  3NZ4 A;  5D6B A;  2FUS A;  1EB4 A;  3GZH A;  2J91 A;  1C3U A;  3R6Y A;  1FUO A;  2O78 A;  5F91 A;  2PTS A;  2X75 A;  2O7E A;  2RJR A;  1J3U A;  1T6P A;  1GKM A;  1RE5 A;  4BAA A;  4ADM A;  4V2Q A;  2O7D A;  1TJV A;  2E9F A;  3KDY A;  1VDK A;  2QVE A;  4CQ5 A;  1YFM A;  2PFM A;  1YIS A;  2VD6 A;  1Q5N A;  1FUR A;  1GK2 A;  1W27 A;  4MX2 A;  3UNV A;  1AUW A;  4FFX A;  1B8F A;  2OHY A;  1DOF A;  1KQ7 A;  3OCF A;  3NO9 A;  3GTD A;  2YII A;  1TJU A;  1C3C A;  3E04 A;  4EEI A;  3R6Q A;  3TV2 A;  1I0A A;  4APB A;  4C6G A;  3KDZ A;  1JSW A;  1TJ7 A;  2RJS A;  1FUP A;  4V2R A;  2HVG A;  3CZO A;  1GK3 A;  3R6V A; 
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