1YISA

Structural genomics of caenorhabditis elegans: adenylosuccinate lyase
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
467
structure length
421
Chain Sequence
ASEDKFESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFDWPFIRSEERKLKHDVMAHNHAFGKLCPTAAGIIHLGATSCFVQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKGATGTQDSFLTLFAGDESKVEALDELVTKKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGELLEPKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLDDSAGRRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMMLQTMADPFFDSVRDRVVGLVNNPINFTGRCVSQTESFIAKELKPTIDKYLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords adenylosuccinate lyase
publication title Structural genomics of Caenorhabditis elegans: adenylosuccinate lyase
rcsb
source organism Caenorhabditis elegans
molecule tags Lyase
total genus 159
structure length 421
sequence length 467
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2005-01-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1yisA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1yisA02
2O6YA 3R6YA 1GK2A 1RE5A 3BHGA 3NZ4A 3OCEA 3QBPA 1C3CA 3RRPA 1TJ7A 1EB4A 3RD8A 4ADMA 2O7EA 5D6BA 1AUWA 5EYVA 2X75A 4C5SA 1FUOA 1YFMA 1GKJA 1DOFA 2J91A 1K7WA 1HY0A 4APAA 2NYNA 1JSWA 1YFEA 4ADLA 4NLEA 5F91A 1C3UA 4MX2A 4EEIA 3R6VA 1U15A 1DCNA 4V2QA 3OCFA 4C6GA 5HW2A 1B8FA 1T6PA 5EYTA 1U16A 4C5UA 1YISA 2O7BA 2OHYA 4BABA 1TJUA 2QGAB 3NO9A 2O7DA 4BAAA 4V2RA 4HGVA 1J3UA 2PTRA 3UNVA 3KDYA 2HVGA 1TJVA 2RJSA 2NYFA 2VD6A 4C5RA 4CQ5A 3KDZA 1T6JA 1I0AA 4EFCA 3C8TA 1W27A 2PTQA 1Q5NA 2QVEA 1FURA 1TJWA 4APBA 2O7FA 3R6QA 3GZHA 1XWOA 1K62A 2O78A 3GTDA 2FUSA 1VDKA 1GK3A 2E9FA 1Y2MA 2PFMA 5F92A 2YIIA 2RJRA 3CZOA 4FFXA 1FUQA 1FUPA 1KQ7A 2PTSA 3E04A 3TV2A 4NSLA 1GKMA 4FLCA 1HY1A
chains in the Genus database with same CATH superfamily
2O6YA 3R6YA 1GK2A 1RE5A 3BHGA 3NZ4A 2FENA 1XL7A 3OCEA 3QBPA 1C3CA 3RRPA 1TJ7A 1EB4A 3RD8A 4ADMA 2O7EA 1XLYA 5D6BA 1AUWA 5EYVA 2X75A 4C5SA 1FUOA 1YFMA 1GKJA 1DOFA 2J91A 1K7WA 1HY0A 4APAA 2NYNA 1JSWA 1YFEA 4NLEA 4ADLA 5F91A 1C3UA 4MX2A 4EEIA 3R6VA 1U15A 1DCNA 4V2QA 3OCFA 3CRW1 2FELA 4C6GA 1XL8A 1XMCA 5HW2A 1B8FA 1T6PA 5EYTA 5M0IA 3CRVA 1U16A 4C5UA 1YISA 2O7BA 2OHYA 4BABA 1TJUA 2QGAB 2O7DA 3NO9A 4BAAA 4V2RA 4HGVA 1J3UA 1XMDA 2PTRA 3UNVA 3KDYA 2HVGA 1TJVA 2RJSA 2NYFA 2VD6A 2VSFA 4C5RA 4CQ5A 3KDZA 1T6JA 1I0AA 4EFCA 3C8TA 1W27A 2PTQA 1Q5NA 2QVEA 1FURA 1TJWA 4APBA 2O7FA 3R6QA 5H8WA 3GZHA 4WNLA 1XWOA 4A15A 1K62A 2O78A 3GTDA 2FUSA 1VDKA 1GK3A 2E9FA 1Y2MA 5M0JA 2PFMA 5F92A 2YIIA 2RJRA 3CZOA 4FFXA 1FUQA 1FUPA 2VL7A 1KQ7A 2PTSA 3E04A 3TV2A 4NSLA 1GKMA 4FLCA 1HY1A
chains in the Genus database with same CATH topology
2O6YA 3R6YA 1GK2A 1RE5A 3BHGA 3NZ4A 3OCEA 3QBPA 1C3CA 3RRPA 1TJ7A 1EB4A 3RD8A 4ADMA 2O7EA 5D6BA 1AUWA 5EYVA 2X75A 4C5SA 1FUOA 1YFMA 1GKJA 1DOFA 2J91A 1K7WA 1HY0A 4APAA 2NYNA 1JSWA 1YFEA 4ADLA 4NLEA 5F91A 1C3UA 4MX2A 4EEIA 3R6VA 1U15A 1DCNA 4V2QA 3OCFA 4C6GA 5HW2A 1B8FA 1T6PA 5EYTA 1U16A 4C5UA 1YISA 2O7BA 2OHYA 4BABA 1TJUA 2QGAB 3NO9A 2O7DA 4BAAA 4V2RA 4HGVA 1J3UA 2PTRA 3UNVA 3KDYA 2HVGA 1TJVA 2RJSA 2NYFA 2VD6A 4C5RA 4CQ5A 3KDZA 1T6JA 1I0AA 4EFCA 3C8TA 1W27A 2PTQA 1Q5NA 2QVEA 1FURA 1TJWA 4APBA 2O7FA 3R6QA 3GZHA 1XWOA 1K62A 2O78A 3GTDA 2FUSA 1VDKA 1GK3A 2E9FA 1Y2MA 2PFMA 5F92A 2YIIA 2RJRA 3CZOA 4FFXA 1FUQA 1FUPA 1KQ7A 2PTSA 3E04A 3TV2A 4NSLA 1GKMA 4FLCA 1HY1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O6Y A;  3R6Y A;  1GK2 A;  1RE5 A;  3BHG A;  3NZ4 A;  3OCE A;  3QBP A;  1C3C A;  3RRP A;  1TJ7 A;  1EB4 A;  3RD8 A;  4ADM A;  2O7E A;  5D6B A;  1AUW A;  5EYV A;  2X75 A;  4C5S A;  1FUO A;  1YFM A;  1GKJ A;  1DOF A;  2J91 A;  1K7W A;  1HY0 A;  4APA A;  2NYN A;  1JSW A;  1YFE A;  4ADL A;  4NLE A;  5F91 A;  1C3U A;  4MX2 A;  4EEI A;  3R6V A;  1U15 A;  1DCN A;  4V2Q A;  3OCF A;  4C6G A;  5HW2 A;  1B8F A;  1T6P A;  5EYT A;  1U16 A;  4C5U A;  1YIS A;  2O7B A;  2OHY A;  4BAB A;  1TJU A;  2QGA B;  3NO9 A;  2O7D A;  4BAA A;  4V2R A;  4HGV A;  1J3U A;  2PTR A;  3UNV A;  3KDY A;  2HVG A;  1TJV A;  2RJS A;  2NYF A;  2VD6 A;  4C5R A;  4CQ5 A;  3KDZ A;  1T6J A;  1I0A A;  4EFC A;  3C8T A;  1W27 A;  2PTQ A;  1Q5N A;  2QVE A;  1FUR A;  1TJW A;  4APB A;  2O7F A;  3R6Q A;  3GZH A;  1XWO A;  1K62 A;  2O78 A;  3GTD A;  2FUS A;  1VDK A;  1GK3 A;  2E9F A;  1Y2M A;  2PFM A;  5F92 A;  2YII A;  2RJR A;  3CZO A;  4FFX A;  1FUQ A;  1FUP A;  1KQ7 A;  2PTS A;  3E04 A;  3TV2 A;  4NSL A;  1GKM A;  4FLC A;  1HY1 A; 
#chains in the Genus database with same CATH topology
 2O6Y A;  3R6Y A;  1GK2 A;  1RE5 A;  3BHG A;  3NZ4 A;  2FEN A;  1XL7 A;  3OCE A;  3QBP A;  1C3C A;  3RRP A;  1TJ7 A;  1EB4 A;  3RD8 A;  4ADM A;  2O7E A;  1XLY A;  5D6B A;  1AUW A;  5EYV A;  2X75 A;  4C5S A;  1FUO A;  1YFM A;  1GKJ A;  1DOF A;  2J91 A;  1K7W A;  1HY0 A;  4APA A;  2NYN A;  1JSW A;  1YFE A;  4NLE A;  4ADL A;  5F91 A;  1C3U A;  4MX2 A;  4EEI A;  3R6V A;  1U15 A;  1DCN A;  4V2Q A;  3OCF A;  3CRW 1;  2FEL A;  4C6G A;  1XL8 A;  1XMC A;  5HW2 A;  1B8F A;  1T6P A;  5EYT A;  5M0I A;  3CRV A;  1U16 A;  4C5U A;  1YIS A;  2O7B A;  2OHY A;  4BAB A;  1TJU A;  2QGA B;  2O7D A;  3NO9 A;  4BAA A;  4V2R A;  4HGV A;  1J3U A;  1XMD A;  2PTR A;  3UNV A;  3KDY A;  2HVG A;  1TJV A;  2RJS A;  2NYF A;  2VD6 A;  2VSF A;  4C5R A;  4CQ5 A;  3KDZ A;  1T6J A;  1I0A A;  4EFC A;  3C8T A;  1W27 A;  2PTQ A;  1Q5N A;  2QVE A;  1FUR A;  1TJW A;  4APB A;  2O7F A;  3R6Q A;  5H8W A;  3GZH A;  4WNL A;  1XWO A;  4A15 A;  1K62 A;  2O78 A;  3GTD A;  2FUS A;  1VDK A;  1GK3 A;  2E9F A;  1Y2M A;  5M0J A;  2PFM A;  5F92 A;  2YII A;  2RJR A;  3CZO A;  4FFX A;  1FUQ A;  1FUP A;  2VL7 A;  1KQ7 A;  2PTS A;  3E04 A;  3TV2 A;  4NSL A;  1GKM A;  4FLC A;  1HY1 A; 
#chains in the Genus database with same CATH homology
 2O6Y A;  3R6Y A;  1GK2 A;  1RE5 A;  3BHG A;  3NZ4 A;  3OCE A;  3QBP A;  1C3C A;  3RRP A;  1TJ7 A;  1EB4 A;  3RD8 A;  4ADM A;  2O7E A;  5D6B A;  1AUW A;  5EYV A;  2X75 A;  4C5S A;  1FUO A;  1YFM A;  1GKJ A;  1DOF A;  2J91 A;  1K7W A;  1HY0 A;  4APA A;  2NYN A;  1JSW A;  1YFE A;  4ADL A;  4NLE A;  5F91 A;  1C3U A;  4MX2 A;  4EEI A;  3R6V A;  1U15 A;  1DCN A;  4V2Q A;  3OCF A;  4C6G A;  5HW2 A;  1B8F A;  1T6P A;  5EYT A;  1U16 A;  4C5U A;  1YIS A;  2O7B A;  2OHY A;  4BAB A;  1TJU A;  2QGA B;  3NO9 A;  2O7D A;  4BAA A;  4V2R A;  4HGV A;  1J3U A;  2PTR A;  3UNV A;  3KDY A;  2HVG A;  1TJV A;  2RJS A;  2NYF A;  2VD6 A;  4C5R A;  4CQ5 A;  3KDZ A;  1T6J A;  1I0A A;  4EFC A;  3C8T A;  1W27 A;  2PTQ A;  1Q5N A;  2QVE A;  1FUR A;  1TJW A;  4APB A;  2O7F A;  3R6Q A;  3GZH A;  1XWO A;  1K62 A;  2O78 A;  3GTD A;  2FUS A;  1VDK A;  1GK3 A;  2E9F A;  1Y2M A;  2PFM A;  5F92 A;  2YII A;  2RJR A;  3CZO A;  4FFX A;  1FUQ A;  1FUP A;  1KQ7 A;  2PTS A;  3E04 A;  3TV2 A;  4NSL A;  1GKM A;  4FLC A;  1HY1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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