1YISA

Structural genomics of caenorhabditis elegans: adenylosuccinate lyase
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
467
structure length
421
Chain Sequence
ASEDKFESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFDWPFIRSEERKLKHDVMAHNHAFGKLCPTAAGIIHLGATSCFVQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKGATGTQDSFLTLFAGDESKVEALDELVTKKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGELLEPKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLDDSAGRRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMMLQTMADPFFDSVRDRVVGLVNNPINFTGRCVSQTESFIAKELKPTIDKYLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Caenorhabditis elegans
publication title Structural genomics of Caenorhabditis elegans: adenylosuccinate lyase
rcsb
molecule keywords adenylosuccinate lyase
total genus 159
structure length 421
sequence length 467
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2005-01-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1yisA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1yisA02
2O7BA 1U15A 4C6GA 4BABA 1GKJA 4C5RA 4C5UA 2NYNA 1XWOA 1B8FA 5F92A 1EB4A 3TV2A 1FUQA 4MX2A 1J3UA 3QBPA 5EYTA 3RRPA 1GK2A 3C8TA 3GTDA 4C5SA 2OHYA 2HVGA 1W27A 2X75A 1DCNA 1TJWA 4V2QA 1KQ7A 3RD8A 1U16A 4V2RA 4FFXA 3KDZA 4NSLA 1GK3A 4HGVA 1I0AA 2YIIA 4EFCA 4NLEA 3UNVA 2FUSA 5EYVA 1TJVA 1VDKA 2NYFA 2PFMA 1HY1A 1YISA 4ADLA 1YFEA 1FUOA 1FURA 2PTQA 1K7WA 1YFMA 1T6PA 3E04A 1AUWA 4EEIA 3R6YA 3NZ4A 1JSWA 3R6QA 3NO9A 2QGAB 2O7DA 3GZHA 3CZOA 2O7EA 2RJRA 1C3CA 1C3UA 1HY0A 1TJUA 3BHGA 3KDYA 1T6JA 5D6BA 1Q5NA 2E9FA 1GKMA 5F91A 4BAAA 4FLCA 4APBA 2O7FA 4ADMA 1FUPA 2PTRA 2O6YA 2RJSA 3OCFA 4APAA 1K62A 5HW2A 1TJ7A 2O78A 1DOFA 2QVEA 1RE5A 2J91A 1Y2MA 4CQ5A 2PTSA 3OCEA 3R6VA 2VD6A
chains in the Genus database with same CATH superfamily
1XMCA 2O7BA 1U15A 4C6GA 4BABA 1GKJA 4C5RA 4WNLA 4C5UA 2NYNA 1XWOA 1B8FA 5F92A 1EB4A 3TV2A 1FUQA 1XMDA 4MX2A 1J3UA 3QBPA 5EYTA 5M0IA 3RRPA 1GK2A 3C8TA 4A15A 3GTDA 4C5SA 2OHYA 2HVGA 1W27A 2X75A 1XLYA 1DCNA 1TJWA 4V2QA 1KQ7A 3RD8A 1U16A 4V2RA 4FFXA 3KDZA 4NSLA 1GK3A 4HGVA 1I0AA 2YIIA 4NLEA 4EFCA 3UNVA 2FUSA 5EYVA 1TJVA 1VDKA 2NYFA 2PFMA 1HY1A 1YISA 4ADLA 5M0JA 1YFEA 1FUOA 1FURA 2PTQA 1K7WA 1YFMA 1T6PA 3E04A 1AUWA 4EEIA 3R6YA 3NZ4A 1JSWA 2FELA 3R6QA 3NO9A 2QGAB 1XL8A 2O7DA 3GZHA 3CZOA 2O7EA 2RJRA 1C3CA 2VSFA 1C3UA 1HY0A 1TJUA 3BHGA 3KDYA 1T6JA 5H8WA 5D6BA 1Q5NA 2E9FA 1GKMA 5F91A 2VL7A 4BAAA 4FLCA 4APBA 2O7FA 4ADMA 1FUPA 2PTRA 2O6YA 2RJSA 3OCFA 3CRVA 4APAA 1K62A 5HW2A 1TJ7A 2O78A 1XL7A 3CRW1 1DOFA 2QVEA 1RE5A 2J91A 1Y2MA 4CQ5A 2FENA 2PTSA 3OCEA 3R6VA 2VD6A
chains in the Genus database with same CATH topology
2O7BA 1U15A 4C6GA 4BABA 1GKJA 4C5RA 4C5UA 2NYNA 1XWOA 1B8FA 5F92A 1EB4A 3TV2A 1FUQA 4MX2A 1J3UA 3QBPA 5EYTA 3RRPA 1GK2A 3C8TA 3GTDA 4C5SA 2OHYA 2HVGA 1W27A 2X75A 1DCNA 1TJWA 4V2QA 1KQ7A 3RD8A 1U16A 4V2RA 4FFXA 3KDZA 4NSLA 1GK3A 4HGVA 1I0AA 2YIIA 4EFCA 4NLEA 3UNVA 2FUSA 5EYVA 1TJVA 1VDKA 2NYFA 2PFMA 1HY1A 1YISA 4ADLA 1YFEA 1FUOA 1FURA 2PTQA 1K7WA 1YFMA 1T6PA 3E04A 1AUWA 4EEIA 3R6YA 3NZ4A 1JSWA 3R6QA 3NO9A 2QGAB 2O7DA 3GZHA 3CZOA 2O7EA 2RJRA 1C3CA 1C3UA 1HY0A 1TJUA 3BHGA 3KDYA 1T6JA 5D6BA 1Q5NA 2E9FA 1GKMA 5F91A 4BAAA 4FLCA 4APBA 2O7FA 4ADMA 1FUPA 2PTRA 2O6YA 2RJSA 3OCFA 4APAA 1K62A 5HW2A 1TJ7A 2O78A 1DOFA 2QVEA 1RE5A 2J91A 1Y2MA 4CQ5A 2PTSA 3OCEA 3R6VA 2VD6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O7B A;  1U15 A;  4C6G A;  4BAB A;  1GKJ A;  4C5R A;  4C5U A;  2NYN A;  1XWO A;  1B8F A;  5F92 A;  1EB4 A;  3TV2 A;  1FUQ A;  4MX2 A;  1J3U A;  3QBP A;  5EYT A;  3RRP A;  1GK2 A;  3C8T A;  3GTD A;  4C5S A;  2OHY A;  2HVG A;  1W27 A;  2X75 A;  1DCN A;  1TJW A;  4V2Q A;  1KQ7 A;  3RD8 A;  1U16 A;  4V2R A;  4FFX A;  3KDZ A;  4NSL A;  1GK3 A;  4HGV A;  1I0A A;  2YII A;  4EFC A;  4NLE A;  3UNV A;  2FUS A;  5EYV A;  1TJV A;  1VDK A;  2NYF A;  2PFM A;  1HY1 A;  1YIS A;  4ADL A;  1YFE A;  1FUO A;  1FUR A;  2PTQ A;  1K7W A;  1YFM A;  1T6P A;  3E04 A;  1AUW A;  4EEI A;  3R6Y A;  3NZ4 A;  1JSW A;  3R6Q A;  3NO9 A;  2QGA B;  2O7D A;  3GZH A;  3CZO A;  2O7E A;  2RJR A;  1C3C A;  1C3U A;  1HY0 A;  1TJU A;  3BHG A;  3KDY A;  1T6J A;  5D6B A;  1Q5N A;  2E9F A;  1GKM A;  5F91 A;  4BAA A;  4FLC A;  4APB A;  2O7F A;  4ADM A;  1FUP A;  2PTR A;  2O6Y A;  2RJS A;  3OCF A;  4APA A;  1K62 A;  5HW2 A;  1TJ7 A;  2O78 A;  1DOF A;  2QVE A;  1RE5 A;  2J91 A;  1Y2M A;  4CQ5 A;  2PTS A;  3OCE A;  3R6V A;  2VD6 A; 
#chains in the Genus database with same CATH topology
 1XMC A;  2O7B A;  1U15 A;  4C6G A;  4BAB A;  1GKJ A;  4C5R A;  4WNL A;  4C5U A;  2NYN A;  1XWO A;  1B8F A;  5F92 A;  1EB4 A;  3TV2 A;  1FUQ A;  1XMD A;  4MX2 A;  1J3U A;  3QBP A;  5EYT A;  5M0I A;  3RRP A;  1GK2 A;  3C8T A;  4A15 A;  3GTD A;  4C5S A;  2OHY A;  2HVG A;  1W27 A;  2X75 A;  1XLY A;  1DCN A;  1TJW A;  4V2Q A;  1KQ7 A;  3RD8 A;  1U16 A;  4V2R A;  4FFX A;  3KDZ A;  4NSL A;  1GK3 A;  4HGV A;  1I0A A;  2YII A;  4NLE A;  4EFC A;  3UNV A;  2FUS A;  5EYV A;  1TJV A;  1VDK A;  2NYF A;  2PFM A;  1HY1 A;  1YIS A;  4ADL A;  5M0J A;  1YFE A;  1FUO A;  1FUR A;  2PTQ A;  1K7W A;  1YFM A;  1T6P A;  3E04 A;  1AUW A;  4EEI A;  3R6Y A;  3NZ4 A;  1JSW A;  2FEL A;  3R6Q A;  3NO9 A;  2QGA B;  1XL8 A;  2O7D A;  3GZH A;  3CZO A;  2O7E A;  2RJR A;  1C3C A;  2VSF A;  1C3U A;  1HY0 A;  1TJU A;  3BHG A;  3KDY A;  1T6J A;  5H8W A;  5D6B A;  1Q5N A;  2E9F A;  1GKM A;  5F91 A;  2VL7 A;  4BAA A;  4FLC A;  4APB A;  2O7F A;  4ADM A;  1FUP A;  2PTR A;  2O6Y A;  2RJS A;  3OCF A;  3CRV A;  4APA A;  1K62 A;  5HW2 A;  1TJ7 A;  2O78 A;  1XL7 A;  3CRW 1;  1DOF A;  2QVE A;  1RE5 A;  2J91 A;  1Y2M A;  4CQ5 A;  2FEN A;  2PTS A;  3OCE A;  3R6V A;  2VD6 A; 
#chains in the Genus database with same CATH homology
 2O7B A;  1U15 A;  4C6G A;  4BAB A;  1GKJ A;  4C5R A;  4C5U A;  2NYN A;  1XWO A;  1B8F A;  5F92 A;  1EB4 A;  3TV2 A;  1FUQ A;  4MX2 A;  1J3U A;  3QBP A;  5EYT A;  3RRP A;  1GK2 A;  3C8T A;  3GTD A;  4C5S A;  2OHY A;  2HVG A;  1W27 A;  2X75 A;  1DCN A;  1TJW A;  4V2Q A;  1KQ7 A;  3RD8 A;  1U16 A;  4V2R A;  4FFX A;  3KDZ A;  4NSL A;  1GK3 A;  4HGV A;  1I0A A;  2YII A;  4EFC A;  4NLE A;  3UNV A;  2FUS A;  5EYV A;  1TJV A;  1VDK A;  2NYF A;  2PFM A;  1HY1 A;  1YIS A;  4ADL A;  1YFE A;  1FUO A;  1FUR A;  2PTQ A;  1K7W A;  1YFM A;  1T6P A;  3E04 A;  1AUW A;  4EEI A;  3R6Y A;  3NZ4 A;  1JSW A;  3R6Q A;  3NO9 A;  2QGA B;  2O7D A;  3GZH A;  3CZO A;  2O7E A;  2RJR A;  1C3C A;  1C3U A;  1HY0 A;  1TJU A;  3BHG A;  3KDY A;  1T6J A;  5D6B A;  1Q5N A;  2E9F A;  1GKM A;  5F91 A;  4BAA A;  4FLC A;  4APB A;  2O7F A;  4ADM A;  1FUP A;  2PTR A;  2O6Y A;  2RJS A;  3OCF A;  4APA A;  1K62 A;  5HW2 A;  1TJ7 A;  2O78 A;  1DOF A;  2QVE A;  1RE5 A;  2J91 A;  1Y2M A;  4CQ5 A;  2PTS A;  3OCE A;  3R6V A;  2VD6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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