1YISA

Structural genomics of caenorhabditis elegans: adenylosuccinate lyase
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
467
structure length
421
Chain Sequence
ASEDKFESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFDWPFIRSEERKLKHDVMAHNHAFGKLCPTAAGIIHLGATSCFVQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKGATGTQDSFLTLFAGDESKVEALDELVTKKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGELLEPKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLDDSAGRRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMMLQTMADPFFDSVRDRVVGLVNNPINFTGRCVSQTESFIAKELKPTIDKYLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords adenylosuccinate lyase
publication title Structural genomics of Caenorhabditis elegans: adenylosuccinate lyase
rcsb
source organism Caenorhabditis elegans
molecule tags Lyase
total genus 159
structure length 421
sequence length 467
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2005-01-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1yisA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1yisA02
1W27A 4C5UA 1TJVA 4ADMA 1FURA 2QGAB 4NLEA 1EB4A 3CZOA 1YISA 1JSWA 1Q5NA 4FFXA 3TV2A 4FLCA 2PTRA 2J91A 2RJRA 3NZ4A 1AUWA 4APBA 5EYVA 3UNVA 3GTDA 2O7DA 4BABA 3NO9A 1GK2A 4HGVA 2O6YA 2VD6A 3BHGA 1U15A 3R6YA 1GK3A 3OCFA 2YIIA 1U16A 3GZHA 4V2RA 1TJ7A 1Y2MA 2FUSA 1C3UA 2PTQA 2O7BA 4EFCA 3R6QA 4C5RA 1FUQA 1C3CA 2O7EA 1YFMA 4CQ5A 4V2QA 2X75A 2RJSA 3KDZA 4C6GA 2NYFA 1T6JA 4BAAA 1HY0A 2O7FA 4APAA 3RRPA 1FUOA 1DCNA 1VDKA 3E04A 5EYTA 3R6VA 2E9FA 1XWOA 4C5SA 2HVGA 2OHYA 2O78A 1B8FA 4NSLA 1KQ7A 5HW2A 2PTSA 1J3UA 3RD8A 1DOFA 3OCEA 5F91A 5F92A 1RE5A 3QBPA 4MX2A 4EEIA 2PFMA 1TJWA 1GKMA 1TJUA 5D6BA 1HY1A 1GKJA 2QVEA 1K7WA 1YFEA 3KDYA 2NYNA 1I0AA 4ADLA 1K62A 1FUPA 1T6PA 3C8TA
chains in the Genus database with same CATH superfamily
1W27A 4C5UA 1TJVA 4ADMA 1FURA 2QGAB 4WNLA 4NLEA 1EB4A 3CZOA 1YISA 1JSWA 1Q5NA 4FFXA 3TV2A 4FLCA 2PTRA 2J91A 2RJRA 3NZ4A 1XLYA 1AUWA 4APBA 5EYVA 3UNVA 3GTDA 2O7DA 4BABA 3NO9A 1GK2A 4HGVA 2O6YA 2VD6A 3BHGA 1U15A 3R6YA 1GK3A 3OCFA 2YIIA 1U16A 3GZHA 4V2RA 2FENA 1TJ7A 1Y2MA 2FUSA 1C3UA 2PTQA 2O7BA 1XL8A 4EFCA 3R6QA 4C5RA 1FUQA 1C3CA 1XMCA 2O7EA 1YFMA 4CQ5A 4V2QA 2X75A 2RJSA 3KDZA 4C6GA 2NYFA 2FELA 1T6JA 5M0JA 4BAAA 1HY0A 2O7FA 4APAA 3RRPA 1FUOA 1DCNA 1VDKA 3E04A 5EYTA 3R6VA 2E9FA 1XWOA 4C5SA 2HVGA 2OHYA 2O78A 1B8FA 4NSLA 1KQ7A 5HW2A 2PTSA 1J3UA 3RD8A 1DOFA 3OCEA 5F91A 5F92A 1RE5A 3QBPA 4MX2A 4EEIA 2PFMA 1TJWA 1GKMA 1TJUA 5M0IA 4A15A 5D6BA 2VSFA 1HY1A 1GKJA 5H8WA 1XMDA 3CRVA 2QVEA 1K7WA 1YFEA 3KDYA 2NYNA 1I0AA 4ADLA 1XL7A 1K62A 2VL7A 1FUPA 3CRW1 1T6PA 3C8TA
chains in the Genus database with same CATH topology
1W27A 4C5UA 1TJVA 4ADMA 1FURA 2QGAB 4NLEA 1EB4A 3CZOA 1YISA 1JSWA 1Q5NA 4FFXA 3TV2A 4FLCA 2PTRA 2J91A 2RJRA 3NZ4A 1AUWA 4APBA 5EYVA 3UNVA 3GTDA 2O7DA 4BABA 3NO9A 1GK2A 4HGVA 2O6YA 2VD6A 3BHGA 1U15A 3R6YA 1GK3A 3OCFA 2YIIA 1U16A 3GZHA 4V2RA 1TJ7A 1Y2MA 2FUSA 1C3UA 2PTQA 2O7BA 4EFCA 3R6QA 4C5RA 1FUQA 1C3CA 2O7EA 1YFMA 4CQ5A 4V2QA 2X75A 2RJSA 3KDZA 4C6GA 2NYFA 1T6JA 4BAAA 1HY0A 2O7FA 4APAA 3RRPA 1FUOA 1DCNA 1VDKA 3E04A 5EYTA 3R6VA 2E9FA 1XWOA 4C5SA 2HVGA 2OHYA 2O78A 1B8FA 4NSLA 1KQ7A 5HW2A 2PTSA 1J3UA 3RD8A 1DOFA 3OCEA 5F91A 5F92A 1RE5A 3QBPA 4MX2A 4EEIA 2PFMA 1TJWA 1GKMA 1TJUA 5D6BA 1HY1A 1GKJA 2QVEA 1K7WA 1YFEA 3KDYA 2NYNA 1I0AA 4ADLA 1K62A 1FUPA 1T6PA 3C8TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1W27 A;  4C5U A;  1TJV A;  4ADM A;  1FUR A;  2QGA B;  4NLE A;  1EB4 A;  3CZO A;  1YIS A;  1JSW A;  1Q5N A;  4FFX A;  3TV2 A;  4FLC A;  2PTR A;  2J91 A;  2RJR A;  3NZ4 A;  1AUW A;  4APB A;  5EYV A;  3UNV A;  3GTD A;  2O7D A;  4BAB A;  3NO9 A;  1GK2 A;  4HGV A;  2O6Y A;  2VD6 A;  3BHG A;  1U15 A;  3R6Y A;  1GK3 A;  3OCF A;  2YII A;  1U16 A;  3GZH A;  4V2R A;  1TJ7 A;  1Y2M A;  2FUS A;  1C3U A;  2PTQ A;  2O7B A;  4EFC A;  3R6Q A;  4C5R A;  1FUQ A;  1C3C A;  2O7E A;  1YFM A;  4CQ5 A;  4V2Q A;  2X75 A;  2RJS A;  3KDZ A;  4C6G A;  2NYF A;  1T6J A;  4BAA A;  1HY0 A;  2O7F A;  4APA A;  3RRP A;  1FUO A;  1DCN A;  1VDK A;  3E04 A;  5EYT A;  3R6V A;  2E9F A;  1XWO A;  4C5S A;  2HVG A;  2OHY A;  2O78 A;  1B8F A;  4NSL A;  1KQ7 A;  5HW2 A;  2PTS A;  1J3U A;  3RD8 A;  1DOF A;  3OCE A;  5F91 A;  5F92 A;  1RE5 A;  3QBP A;  4MX2 A;  4EEI A;  2PFM A;  1TJW A;  1GKM A;  1TJU A;  5D6B A;  1HY1 A;  1GKJ A;  2QVE A;  1K7W A;  1YFE A;  3KDY A;  2NYN A;  1I0A A;  4ADL A;  1K62 A;  1FUP A;  1T6P A;  3C8T A; 
#chains in the Genus database with same CATH topology
 1W27 A;  4C5U A;  1TJV A;  4ADM A;  1FUR A;  2QGA B;  4WNL A;  4NLE A;  1EB4 A;  3CZO A;  1YIS A;  1JSW A;  1Q5N A;  4FFX A;  3TV2 A;  4FLC A;  2PTR A;  2J91 A;  2RJR A;  3NZ4 A;  1XLY A;  1AUW A;  4APB A;  5EYV A;  3UNV A;  3GTD A;  2O7D A;  4BAB A;  3NO9 A;  1GK2 A;  4HGV A;  2O6Y A;  2VD6 A;  3BHG A;  1U15 A;  3R6Y A;  1GK3 A;  3OCF A;  2YII A;  1U16 A;  3GZH A;  4V2R A;  2FEN A;  1TJ7 A;  1Y2M A;  2FUS A;  1C3U A;  2PTQ A;  2O7B A;  1XL8 A;  4EFC A;  3R6Q A;  4C5R A;  1FUQ A;  1C3C A;  1XMC A;  2O7E A;  1YFM A;  4CQ5 A;  4V2Q A;  2X75 A;  2RJS A;  3KDZ A;  4C6G A;  2NYF A;  2FEL A;  1T6J A;  5M0J A;  4BAA A;  1HY0 A;  2O7F A;  4APA A;  3RRP A;  1FUO A;  1DCN A;  1VDK A;  3E04 A;  5EYT A;  3R6V A;  2E9F A;  1XWO A;  4C5S A;  2HVG A;  2OHY A;  2O78 A;  1B8F A;  4NSL A;  1KQ7 A;  5HW2 A;  2PTS A;  1J3U A;  3RD8 A;  1DOF A;  3OCE A;  5F91 A;  5F92 A;  1RE5 A;  3QBP A;  4MX2 A;  4EEI A;  2PFM A;  1TJW A;  1GKM A;  1TJU A;  5M0I A;  4A15 A;  5D6B A;  2VSF A;  1HY1 A;  1GKJ A;  5H8W A;  1XMD A;  3CRV A;  2QVE A;  1K7W A;  1YFE A;  3KDY A;  2NYN A;  1I0A A;  4ADL A;  1XL7 A;  1K62 A;  2VL7 A;  1FUP A;  3CRW 1;  1T6P A;  3C8T A; 
#chains in the Genus database with same CATH homology
 1W27 A;  4C5U A;  1TJV A;  4ADM A;  1FUR A;  2QGA B;  4NLE A;  1EB4 A;  3CZO A;  1YIS A;  1JSW A;  1Q5N A;  4FFX A;  3TV2 A;  4FLC A;  2PTR A;  2J91 A;  2RJR A;  3NZ4 A;  1AUW A;  4APB A;  5EYV A;  3UNV A;  3GTD A;  2O7D A;  4BAB A;  3NO9 A;  1GK2 A;  4HGV A;  2O6Y A;  2VD6 A;  3BHG A;  1U15 A;  3R6Y A;  1GK3 A;  3OCF A;  2YII A;  1U16 A;  3GZH A;  4V2R A;  1TJ7 A;  1Y2M A;  2FUS A;  1C3U A;  2PTQ A;  2O7B A;  4EFC A;  3R6Q A;  4C5R A;  1FUQ A;  1C3C A;  2O7E A;  1YFM A;  4CQ5 A;  4V2Q A;  2X75 A;  2RJS A;  3KDZ A;  4C6G A;  2NYF A;  1T6J A;  4BAA A;  1HY0 A;  2O7F A;  4APA A;  3RRP A;  1FUO A;  1DCN A;  1VDK A;  3E04 A;  5EYT A;  3R6V A;  2E9F A;  1XWO A;  4C5S A;  2HVG A;  2OHY A;  2O78 A;  1B8F A;  4NSL A;  1KQ7 A;  5HW2 A;  2PTS A;  1J3U A;  3RD8 A;  1DOF A;  3OCE A;  5F91 A;  5F92 A;  1RE5 A;  3QBP A;  4MX2 A;  4EEI A;  2PFM A;  1TJW A;  1GKM A;  1TJU A;  5D6B A;  1HY1 A;  1GKJ A;  2QVE A;  1K7W A;  1YFE A;  3KDY A;  2NYN A;  1I0A A;  4ADL A;  1K62 A;  1FUP A;  1T6P A;  3C8T A; 
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similar chains in the Genus database (?% sequence similarity)
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