1YISA

Structural genomics of caenorhabditis elegans: adenylosuccinate lyase
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
467
structure length
421
Chain Sequence
ASEDKFESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFDWPFIRSEERKLKHDVMAHNHAFGKLCPTAAGIIHLGATSCFVQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKGATGTQDSFLTLFAGDESKVEALDELVTKKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGELLEPKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLDDSAGRRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMMLQTMADPFFDSVRDRVVGLVNNPINFTGRCVSQTESFIAKELKPTIDKYLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords adenylosuccinate lyase
publication title Structural genomics of Caenorhabditis elegans: adenylosuccinate lyase
rcsb
source organism Caenorhabditis elegans
total genus 159
structure length 421
sequence length 467
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2005-01-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1yisA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1yisA02
1YFMA 1TJUA 2PTSA 2FUSA 1GK3A 5F92A 1KQ7A 1HY1A 2RJRA 4NSLA 1TJWA 4BABA 3R6QA 3UNVA 3NO9A 1K7WA 3TV2A 2NYNA 4ADMA 2VD6A 3E04A 4V2RA 1T6PA 1FUPA 1Q5NA 4FFXA 3KDYA 1FUOA 4HGVA 4C5SA 1FUQA 1JSWA 2O78A 1RE5A 2PFMA 3RRPA 2O7EA 1TJVA 4MX2A 3C8TA 1K62A 4C5UA 3RD8A 1XWOA 2E9FA 2O7FA 2HVGA 4V2QA 1C3UA 1T6JA 1HY0A 1AUWA 1GK2A 2NYFA 1I0AA 4FLCA 2QVEA 2O6YA 4EEIA 3GZHA 1VDKA 4BAAA 4EFCA 4C5RA 3R6YA 2PTRA 2X75A 4APBA 3KDZA 3GTDA 2O7DA 4ADLA 1B8FA 3BHGA 3OCEA 5HW2A 4NLEA 3OCFA 5EYVA 1Y2MA 1U15A 2J91A 1GKMA 2OHYA 1DOFA 1GKJA 1TJ7A 1YISA 4C6GA 1U16A 3NZ4A 2PTQA 3QBPA 2O7BA 3CZOA 5EYTA 1W27A 1FURA 1DCNA 2YIIA 2QGAB 1J3UA 1YFEA 2RJSA 4CQ5A 5F91A 1C3CA 1EB4A 5D6BA 3R6VA 4APAA
chains in the Genus database with same CATH superfamily
1YFMA 1TJUA 2PTSA 2FUSA 1XMCA 1GK3A 5F92A 1KQ7A 1HY1A 2RJRA 3CRW1 4NSLA 1TJWA 4BABA 3CRVA 3R6QA 3UNVA 3NO9A 1K7WA 3TV2A 2NYNA 4ADMA 2VD6A 3E04A 4V2RA 1T6PA 1FUPA 1Q5NA 4FFXA 5H8WA 3KDYA 1FUOA 4HGVA 2VL7A 4C5SA 1FUQA 1JSWA 2O78A 1RE5A 2PFMA 3RRPA 2O7EA 1TJVA 4MX2A 3C8TA 1K62A 4C5UA 3RD8A 1XWOA 2E9FA 4WNLA 2O7FA 2HVGA 4V2QA 2VSFA 1XL7A 1C3UA 1T6JA 1HY0A 1AUWA 1GK2A 2NYFA 1I0AA 4FLCA 2QVEA 2O6YA 4EEIA 1XMDA 3GZHA 1VDKA 4BAAA 4EFCA 4C5RA 3R6YA 2PTRA 2X75A 4APBA 3KDZA 3GTDA 2O7DA 4ADLA 1B8FA 5M0IA 3BHGA 3OCEA 4NLEA 5HW2A 3OCFA 4A15A 5EYVA 1Y2MA 1U15A 2J91A 1GKMA 2OHYA 1DOFA 1GKJA 1TJ7A 1YISA 4C6GA 1U16A 3NZ4A 1XLYA 2PTQA 3QBPA 2O7BA 3CZOA 5EYTA 1W27A 5M0JA 1FURA 1DCNA 2YIIA 2QGAB 2FENA 1J3UA 1YFEA 2RJSA 4CQ5A 2FELA 5F91A 1C3CA 1EB4A 5D6BA 3R6VA 4APAA 1XL8A
chains in the Genus database with same CATH topology
1YFMA 1TJUA 2PTSA 2FUSA 1GK3A 5F92A 1KQ7A 1HY1A 2RJRA 4NSLA 1TJWA 4BABA 3R6QA 3UNVA 3NO9A 1K7WA 3TV2A 2NYNA 4ADMA 2VD6A 3E04A 4V2RA 1T6PA 1FUPA 1Q5NA 4FFXA 3KDYA 1FUOA 4HGVA 4C5SA 1FUQA 1JSWA 2O78A 1RE5A 2PFMA 3RRPA 2O7EA 1TJVA 4MX2A 3C8TA 1K62A 4C5UA 3RD8A 1XWOA 2E9FA 2O7FA 2HVGA 4V2QA 1C3UA 1T6JA 1HY0A 1AUWA 1GK2A 2NYFA 1I0AA 4FLCA 2QVEA 2O6YA 4EEIA 3GZHA 1VDKA 4BAAA 4EFCA 4C5RA 3R6YA 2PTRA 2X75A 4APBA 3KDZA 3GTDA 2O7DA 4ADLA 1B8FA 3BHGA 3OCEA 5HW2A 4NLEA 3OCFA 5EYVA 1Y2MA 1U15A 2J91A 1GKMA 2OHYA 1DOFA 1GKJA 1TJ7A 1YISA 4C6GA 1U16A 3NZ4A 2PTQA 3QBPA 2O7BA 3CZOA 5EYTA 1W27A 1FURA 1DCNA 2YIIA 2QGAB 1J3UA 1YFEA 2RJSA 4CQ5A 5F91A 1C3CA 1EB4A 5D6BA 3R6VA 4APAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YFM A;  1TJU A;  2PTS A;  2FUS A;  1GK3 A;  5F92 A;  1KQ7 A;  1HY1 A;  2RJR A;  4NSL A;  1TJW A;  4BAB A;  3R6Q A;  3UNV A;  3NO9 A;  1K7W A;  3TV2 A;  2NYN A;  4ADM A;  2VD6 A;  3E04 A;  4V2R A;  1T6P A;  1FUP A;  1Q5N A;  4FFX A;  3KDY A;  1FUO A;  4HGV A;  4C5S A;  1FUQ A;  1JSW A;  2O78 A;  1RE5 A;  2PFM A;  3RRP A;  2O7E A;  1TJV A;  4MX2 A;  3C8T A;  1K62 A;  4C5U A;  3RD8 A;  1XWO A;  2E9F A;  2O7F A;  2HVG A;  4V2Q A;  1C3U A;  1T6J A;  1HY0 A;  1AUW A;  1GK2 A;  2NYF A;  1I0A A;  4FLC A;  2QVE A;  2O6Y A;  4EEI A;  3GZH A;  1VDK A;  4BAA A;  4EFC A;  4C5R A;  3R6Y A;  2PTR A;  2X75 A;  4APB A;  3KDZ A;  3GTD A;  2O7D A;  4ADL A;  1B8F A;  3BHG A;  3OCE A;  5HW2 A;  4NLE A;  3OCF A;  5EYV A;  1Y2M A;  1U15 A;  2J91 A;  1GKM A;  2OHY A;  1DOF A;  1GKJ A;  1TJ7 A;  1YIS A;  4C6G A;  1U16 A;  3NZ4 A;  2PTQ A;  3QBP A;  2O7B A;  3CZO A;  5EYT A;  1W27 A;  1FUR A;  1DCN A;  2YII A;  2QGA B;  1J3U A;  1YFE A;  2RJS A;  4CQ5 A;  5F91 A;  1C3C A;  1EB4 A;  5D6B A;  3R6V A;  4APA A; 
#chains in the Genus database with same CATH topology
 1YFM A;  1TJU A;  2PTS A;  2FUS A;  1XMC A;  1GK3 A;  5F92 A;  1KQ7 A;  1HY1 A;  2RJR A;  3CRW 1;  4NSL A;  1TJW A;  4BAB A;  3CRV A;  3R6Q A;  3UNV A;  3NO9 A;  1K7W A;  3TV2 A;  2NYN A;  4ADM A;  2VD6 A;  3E04 A;  4V2R A;  1T6P A;  1FUP A;  1Q5N A;  4FFX A;  5H8W A;  3KDY A;  1FUO A;  4HGV A;  2VL7 A;  4C5S A;  1FUQ A;  1JSW A;  2O78 A;  1RE5 A;  2PFM A;  3RRP A;  2O7E A;  1TJV A;  4MX2 A;  3C8T A;  1K62 A;  4C5U A;  3RD8 A;  1XWO A;  2E9F A;  4WNL A;  2O7F A;  2HVG A;  4V2Q A;  2VSF A;  1XL7 A;  1C3U A;  1T6J A;  1HY0 A;  1AUW A;  1GK2 A;  2NYF A;  1I0A A;  4FLC A;  2QVE A;  2O6Y A;  4EEI A;  1XMD A;  3GZH A;  1VDK A;  4BAA A;  4EFC A;  4C5R A;  3R6Y A;  2PTR A;  2X75 A;  4APB A;  3KDZ A;  3GTD A;  2O7D A;  4ADL A;  1B8F A;  5M0I A;  3BHG A;  3OCE A;  4NLE A;  5HW2 A;  3OCF A;  4A15 A;  5EYV A;  1Y2M A;  1U15 A;  2J91 A;  1GKM A;  2OHY A;  1DOF A;  1GKJ A;  1TJ7 A;  1YIS A;  4C6G A;  1U16 A;  3NZ4 A;  1XLY A;  2PTQ A;  3QBP A;  2O7B A;  3CZO A;  5EYT A;  1W27 A;  5M0J A;  1FUR A;  1DCN A;  2YII A;  2QGA B;  2FEN A;  1J3U A;  1YFE A;  2RJS A;  4CQ5 A;  2FEL A;  5F91 A;  1C3C A;  1EB4 A;  5D6B A;  3R6V A;  4APA A;  1XL8 A; 
#chains in the Genus database with same CATH homology
 1YFM A;  1TJU A;  2PTS A;  2FUS A;  1GK3 A;  5F92 A;  1KQ7 A;  1HY1 A;  2RJR A;  4NSL A;  1TJW A;  4BAB A;  3R6Q A;  3UNV A;  3NO9 A;  1K7W A;  3TV2 A;  2NYN A;  4ADM A;  2VD6 A;  3E04 A;  4V2R A;  1T6P A;  1FUP A;  1Q5N A;  4FFX A;  3KDY A;  1FUO A;  4HGV A;  4C5S A;  1FUQ A;  1JSW A;  2O78 A;  1RE5 A;  2PFM A;  3RRP A;  2O7E A;  1TJV A;  4MX2 A;  3C8T A;  1K62 A;  4C5U A;  3RD8 A;  1XWO A;  2E9F A;  2O7F A;  2HVG A;  4V2Q A;  1C3U A;  1T6J A;  1HY0 A;  1AUW A;  1GK2 A;  2NYF A;  1I0A A;  4FLC A;  2QVE A;  2O6Y A;  4EEI A;  3GZH A;  1VDK A;  4BAA A;  4EFC A;  4C5R A;  3R6Y A;  2PTR A;  2X75 A;  4APB A;  3KDZ A;  3GTD A;  2O7D A;  4ADL A;  1B8F A;  3BHG A;  3OCE A;  5HW2 A;  4NLE A;  3OCF A;  5EYV A;  1Y2M A;  1U15 A;  2J91 A;  1GKM A;  2OHY A;  1DOF A;  1GKJ A;  1TJ7 A;  1YIS A;  4C6G A;  1U16 A;  3NZ4 A;  2PTQ A;  3QBP A;  2O7B A;  3CZO A;  5EYT A;  1W27 A;  1FUR A;  1DCN A;  2YII A;  2QGA B;  1J3U A;  1YFE A;  2RJS A;  4CQ5 A;  5F91 A;  1C3C A;  1EB4 A;  5D6B A;  3R6V A;  4APA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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