1YISA

Structural genomics of caenorhabditis elegans: adenylosuccinate lyase
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
467
structure length
421
Chain Sequence
ASEDKFESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFDWPFIRSEERKLKHDVMAHNHAFGKLCPTAAGIIHLGATSCFVQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKGATGTQDSFLTLFAGDESKVEALDELVTKKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGELLEPKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLDDSAGRRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMMLQTMADPFFDSVRDRVVGLVNNPINFTGRCVSQTESFIAKELKPTIDKYLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural genomics of Caenorhabditis elegans: adenylosuccinate lyase
rcsb
source organism Caenorhabditis elegans
molecule tags Lyase
molecule keywords adenylosuccinate lyase
total genus 159
structure length 421
sequence length 467
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2005-01-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1yisA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1yisA02
1I0AA 1GKMA 3OCFA 1C3CA 3R6VA 1GK2A 4BAAA 3TV2A 1W27A 3BHGA 4C6GA 2FUSA 1RE5A 1TJUA 5F92A 4HGVA 1T6PA 3E04A 1KQ7A 5F91A 3GZHA 4C5RA 2O78A 1FUQA 4EFCA 1B8FA 2E9FA 1JSWA 2NYFA 4EEIA 4APBA 1DCNA 3GTDA 5EYVA 1C3UA 1TJ7A 1YFMA 4APAA 2PTQA 3NZ4A 1VDKA 4C5SA 2J91A 3RRPA 2O7FA 4ADMA 1YISA 5EYTA 3RD8A 2O7EA 2PFMA 4C5UA 1Y2MA 2HVGA 5HW2A 2PTSA 2QGAB 3R6QA 1AUWA 1TJVA 3KDZA 3QBPA 1K62A 1U15A 3UNVA 1HY0A 2NYNA 1DOFA 1FUPA 4NSLA 3OCEA 4V2RA 1U16A 2OHYA 4BABA 4NLEA 4ADLA 2O7DA 1YFEA 5D6BA 1FURA 3R6YA 2VD6A 2O6YA 4MX2A 2QVEA 2RJSA 3CZOA 3C8TA 1GKJA 1HY1A 2PTRA 2RJRA 2O7BA 1FUOA 1GK3A 4FLCA 1T6JA 4CQ5A 2X75A 3KDYA 1EB4A 1TJWA 3NO9A 1J3UA 1XWOA 1Q5NA 4V2QA 2YIIA 4FFXA 1K7WA
chains in the Genus database with same CATH superfamily
1I0AA 1GKMA 3OCFA 4A15A 1C3CA 3R6VA 1GK2A 4BAAA 5M0JA 3TV2A 1W27A 3BHGA 4C6GA 2FUSA 1RE5A 1TJUA 5F92A 4HGVA 1T6PA 3E04A 1KQ7A 5F91A 3GZHA 4C5RA 2O78A 1FUQA 4EFCA 2VL7A 1B8FA 2E9FA 1JSWA 2NYFA 4EEIA 4APBA 5M0IA 1DCNA 2FENA 3CRW1 3GTDA 5EYVA 1C3UA 1TJ7A 1YFMA 4APAA 2PTQA 5H8WA 3NZ4A 1VDKA 4C5SA 2J91A 3RRPA 2O7FA 4ADMA 1YISA 5EYTA 3RD8A 2O7EA 2PFMA 4C5UA 1Y2MA 2HVGA 5HW2A 2PTSA 2QGAB 3R6QA 1AUWA 1TJVA 3KDZA 3QBPA 1XLYA 1K62A 1U15A 2VSFA 3UNVA 1HY0A 2NYNA 1DOFA 1FUPA 4NSLA 3OCEA 4V2RA 1U16A 1XL7A 2OHYA 4BABA 4NLEA 4ADLA 2O7DA 1YFEA 5D6BA 1FURA 3R6YA 2VD6A 2O6YA 4MX2A 2QVEA 2FELA 2RJSA 3CZOA 3C8TA 1GKJA 1HY1A 2PTRA 2RJRA 1XMDA 2O7BA 1FUOA 1XMCA 1GK3A 4FLCA 1T6JA 4CQ5A 2X75A 3KDYA 1XL8A 1EB4A 1TJWA 3NO9A 1J3UA 3CRVA 1XWOA 1Q5NA 4V2QA 2YIIA 4WNLA 4FFXA 1K7WA
chains in the Genus database with same CATH topology
1I0AA 1GKMA 3OCFA 1C3CA 3R6VA 1GK2A 4BAAA 3TV2A 1W27A 3BHGA 4C6GA 2FUSA 1RE5A 1TJUA 5F92A 4HGVA 1T6PA 3E04A 1KQ7A 5F91A 3GZHA 4C5RA 2O78A 1FUQA 4EFCA 1B8FA 2E9FA 1JSWA 2NYFA 4EEIA 4APBA 1DCNA 3GTDA 5EYVA 1C3UA 1TJ7A 1YFMA 4APAA 2PTQA 3NZ4A 1VDKA 4C5SA 2J91A 3RRPA 2O7FA 4ADMA 1YISA 5EYTA 3RD8A 2O7EA 2PFMA 4C5UA 1Y2MA 2HVGA 5HW2A 2PTSA 2QGAB 3R6QA 1AUWA 1TJVA 3KDZA 3QBPA 1K62A 1U15A 3UNVA 1HY0A 2NYNA 1DOFA 1FUPA 4NSLA 3OCEA 4V2RA 1U16A 2OHYA 4BABA 4NLEA 4ADLA 2O7DA 1YFEA 5D6BA 1FURA 3R6YA 2VD6A 2O6YA 4MX2A 2QVEA 2RJSA 3CZOA 3C8TA 1GKJA 1HY1A 2PTRA 2RJRA 2O7BA 1FUOA 1GK3A 4FLCA 1T6JA 4CQ5A 2X75A 3KDYA 1EB4A 1TJWA 3NO9A 1J3UA 1XWOA 1Q5NA 4V2QA 2YIIA 4FFXA 1K7WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I0A A;  1GKM A;  3OCF A;  1C3C A;  3R6V A;  1GK2 A;  4BAA A;  3TV2 A;  1W27 A;  3BHG A;  4C6G A;  2FUS A;  1RE5 A;  1TJU A;  5F92 A;  4HGV A;  1T6P A;  3E04 A;  1KQ7 A;  5F91 A;  3GZH A;  4C5R A;  2O78 A;  1FUQ A;  4EFC A;  1B8F A;  2E9F A;  1JSW A;  2NYF A;  4EEI A;  4APB A;  1DCN A;  3GTD A;  5EYV A;  1C3U A;  1TJ7 A;  1YFM A;  4APA A;  2PTQ A;  3NZ4 A;  1VDK A;  4C5S A;  2J91 A;  3RRP A;  2O7F A;  4ADM A;  1YIS A;  5EYT A;  3RD8 A;  2O7E A;  2PFM A;  4C5U A;  1Y2M A;  2HVG A;  5HW2 A;  2PTS A;  2QGA B;  3R6Q A;  1AUW A;  1TJV A;  3KDZ A;  3QBP A;  1K62 A;  1U15 A;  3UNV A;  1HY0 A;  2NYN A;  1DOF A;  1FUP A;  4NSL A;  3OCE A;  4V2R A;  1U16 A;  2OHY A;  4BAB A;  4NLE A;  4ADL A;  2O7D A;  1YFE A;  5D6B A;  1FUR A;  3R6Y A;  2VD6 A;  2O6Y A;  4MX2 A;  2QVE A;  2RJS A;  3CZO A;  3C8T A;  1GKJ A;  1HY1 A;  2PTR A;  2RJR A;  2O7B A;  1FUO A;  1GK3 A;  4FLC A;  1T6J A;  4CQ5 A;  2X75 A;  3KDY A;  1EB4 A;  1TJW A;  3NO9 A;  1J3U A;  1XWO A;  1Q5N A;  4V2Q A;  2YII A;  4FFX A;  1K7W A; 
#chains in the Genus database with same CATH topology
 1I0A A;  1GKM A;  3OCF A;  4A15 A;  1C3C A;  3R6V A;  1GK2 A;  4BAA A;  5M0J A;  3TV2 A;  1W27 A;  3BHG A;  4C6G A;  2FUS A;  1RE5 A;  1TJU A;  5F92 A;  4HGV A;  1T6P A;  3E04 A;  1KQ7 A;  5F91 A;  3GZH A;  4C5R A;  2O78 A;  1FUQ A;  4EFC A;  2VL7 A;  1B8F A;  2E9F A;  1JSW A;  2NYF A;  4EEI A;  4APB A;  5M0I A;  1DCN A;  2FEN A;  3CRW 1;  3GTD A;  5EYV A;  1C3U A;  1TJ7 A;  1YFM A;  4APA A;  2PTQ A;  5H8W A;  3NZ4 A;  1VDK A;  4C5S A;  2J91 A;  3RRP A;  2O7F A;  4ADM A;  1YIS A;  5EYT A;  3RD8 A;  2O7E A;  2PFM A;  4C5U A;  1Y2M A;  2HVG A;  5HW2 A;  2PTS A;  2QGA B;  3R6Q A;  1AUW A;  1TJV A;  3KDZ A;  3QBP A;  1XLY A;  1K62 A;  1U15 A;  2VSF A;  3UNV A;  1HY0 A;  2NYN A;  1DOF A;  1FUP A;  4NSL A;  3OCE A;  4V2R A;  1U16 A;  1XL7 A;  2OHY A;  4BAB A;  4NLE A;  4ADL A;  2O7D A;  1YFE A;  5D6B A;  1FUR A;  3R6Y A;  2VD6 A;  2O6Y A;  4MX2 A;  2QVE A;  2FEL A;  2RJS A;  3CZO A;  3C8T A;  1GKJ A;  1HY1 A;  2PTR A;  2RJR A;  1XMD A;  2O7B A;  1FUO A;  1XMC A;  1GK3 A;  4FLC A;  1T6J A;  4CQ5 A;  2X75 A;  3KDY A;  1XL8 A;  1EB4 A;  1TJW A;  3NO9 A;  1J3U A;  3CRV A;  1XWO A;  1Q5N A;  4V2Q A;  2YII A;  4WNL A;  4FFX A;  1K7W A; 
#chains in the Genus database with same CATH homology
 1I0A A;  1GKM A;  3OCF A;  1C3C A;  3R6V A;  1GK2 A;  4BAA A;  3TV2 A;  1W27 A;  3BHG A;  4C6G A;  2FUS A;  1RE5 A;  1TJU A;  5F92 A;  4HGV A;  1T6P A;  3E04 A;  1KQ7 A;  5F91 A;  3GZH A;  4C5R A;  2O78 A;  1FUQ A;  4EFC A;  1B8F A;  2E9F A;  1JSW A;  2NYF A;  4EEI A;  4APB A;  1DCN A;  3GTD A;  5EYV A;  1C3U A;  1TJ7 A;  1YFM A;  4APA A;  2PTQ A;  3NZ4 A;  1VDK A;  4C5S A;  2J91 A;  3RRP A;  2O7F A;  4ADM A;  1YIS A;  5EYT A;  3RD8 A;  2O7E A;  2PFM A;  4C5U A;  1Y2M A;  2HVG A;  5HW2 A;  2PTS A;  2QGA B;  3R6Q A;  1AUW A;  1TJV A;  3KDZ A;  3QBP A;  1K62 A;  1U15 A;  3UNV A;  1HY0 A;  2NYN A;  1DOF A;  1FUP A;  4NSL A;  3OCE A;  4V2R A;  1U16 A;  2OHY A;  4BAB A;  4NLE A;  4ADL A;  2O7D A;  1YFE A;  5D6B A;  1FUR A;  3R6Y A;  2VD6 A;  2O6Y A;  4MX2 A;  2QVE A;  2RJS A;  3CZO A;  3C8T A;  1GKJ A;  1HY1 A;  2PTR A;  2RJR A;  2O7B A;  1FUO A;  1GK3 A;  4FLC A;  1T6J A;  4CQ5 A;  2X75 A;  3KDY A;  1EB4 A;  1TJW A;  3NO9 A;  1J3U A;  1XWO A;  1Q5N A;  4V2Q A;  2YII A;  4FFX A;  1K7W A; 
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similar chains in the Genus database (?% sequence similarity)
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