1YISA

Structural genomics of caenorhabditis elegans: adenylosuccinate lyase
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
467
structure length
421
Chain Sequence
b'ASEDKFESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFDWPFIRSEERKLKHDVMAHNHAFGKLCPTAAGIIHLGATSCFVQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKGATGTQDSFLTLFAGDESKVEALDELVTKKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGELLEPKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLDDSAGRRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMMLQTMADPFFDSVRDRVVGLVNNPINFTGRCVSQTESFIAKELKPTIDKYLD'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords adenylosuccinate lyase
publication title Structural genomics of Caenorhabditis elegans: adenylosuccinate lyase
rcsb
source organism Caenorhabditis elegans
molecule tags Lyase
total genus 159
structure length 421
sequence length 467
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2005-01-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1yisA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1yisA02
1J3UA 1Q5NA 3BHGA 1GKMA 2O7DA 4NSLA 3OCEA 4V2RA 3QBPA 1B8FA 1EB4A 2PTRA 1GK3A 1C3CA 1K62A 2O7EA 3R6VA 4ADLA 4BAAA 2E9FA 2RJRA 4HGVA 4C5SA 2RJSA 4APAA 4C5RA 2PTQA 1C3UA 5F92A 1JSWA 3C8TA 5HW2A 4C5UA 5EYTA 3KDZA 3NO9A 3RRPA 3R6QA 1KQ7A 1FUPA 1U16A 2OHYA 3GZHA 1GKJA 1YISA 4MX2A 1DOFA 4BABA 2O7FA 2NYFA 3UNVA 1FUQA 2VD6A 4FFXA 2QGAB 2FUSA 3CZOA 1K7WA 2PFMA 1AUWA 2O7BA 1HY0A 3E04A 4FLCA 1TJWA 1RE5A 2HVGA 2O6YA 3KDYA 1TJVA 2NYNA 2QVEA 2YIIA 3OCFA 1TJUA 2PTSA 4V2QA 1GK2A 4EFCA 1W27A 2O78A 4APBA 1FURA 1T6PA 3NZ4A 3TV2A 2X75A 4NLEA 4C6GA 4ADMA 1FUOA 5EYVA 3GTDA 1XWOA 1I0AA 5F91A 1T6JA 5D6BA 3R6YA 4EEIA 1HY1A 1U15A 2J91A 1YFEA 3RD8A 1VDKA 1DCNA 1TJ7A 4CQ5A 1Y2MA 1YFMA
chains in the Genus database with same CATH superfamily
1J3UA 1Q5NA 3BHGA 1GKMA 2O7DA 3CRW1 4NSLA 3OCEA 4V2RA 3QBPA 1B8FA 1EB4A 2PTRA 1GK3A 1C3CA 1K62A 2O7EA 3R6VA 4ADLA 4BAAA 2E9FA 2RJRA 4HGVA 4C5SA 2RJSA 1XMCA 2VL7A 4APAA 4C5RA 2PTQA 1C3UA 5F92A 1JSWA 3C8TA 5HW2A 4C5UA 5EYTA 2FENA 3KDZA 3NO9A 3RRPA 3R6QA 1KQ7A 5M0JA 1FUPA 1U16A 2OHYA 3GZHA 1GKJA 4WNLA 1YISA 4MX2A 1DOFA 4BABA 2O7FA 1XLYA 4A15A 2NYFA 3UNVA 1FUQA 2VD6A 4FFXA 2QGAB 2FUSA 3CZOA 1K7WA 2PFMA 1AUWA 2O7BA 1HY0A 3E04A 4FLCA 1TJWA 1RE5A 2HVGA 2O6YA 3KDYA 5H8WA 1TJVA 2NYNA 2QVEA 2YIIA 3OCFA 1TJUA 2PTSA 2VSFA 4V2QA 1GK2A 4EFCA 1W27A 2O78A 4APBA 1FURA 1T6PA 3NZ4A 3TV2A 2X75A 4NLEA 1XL8A 4C6GA 1XL7A 2FELA 4ADMA 1XMDA 1FUOA 5EYVA 3CRVA 5M0IA 3GTDA 1XWOA 1I0AA 5F91A 1T6JA 5D6BA 3R6YA 4EEIA 1HY1A 1U15A 2J91A 1YFEA 3RD8A 1VDKA 1DCNA 1TJ7A 4CQ5A 1Y2MA 1YFMA
chains in the Genus database with same CATH topology
1J3UA 1Q5NA 3BHGA 1GKMA 2O7DA 4NSLA 3OCEA 4V2RA 3QBPA 1B8FA 1EB4A 2PTRA 1GK3A 1C3CA 1K62A 2O7EA 3R6VA 4ADLA 4BAAA 2E9FA 2RJRA 4HGVA 4C5SA 2RJSA 4APAA 4C5RA 2PTQA 1C3UA 5F92A 1JSWA 3C8TA 5HW2A 4C5UA 5EYTA 3KDZA 3NO9A 3RRPA 3R6QA 1KQ7A 1FUPA 1U16A 2OHYA 3GZHA 1GKJA 1YISA 4MX2A 1DOFA 4BABA 2O7FA 2NYFA 3UNVA 1FUQA 2VD6A 4FFXA 2QGAB 2FUSA 3CZOA 1K7WA 2PFMA 1AUWA 2O7BA 1HY0A 3E04A 4FLCA 1TJWA 1RE5A 2HVGA 2O6YA 3KDYA 1TJVA 2NYNA 2QVEA 2YIIA 3OCFA 1TJUA 2PTSA 4V2QA 1GK2A 4EFCA 1W27A 2O78A 4APBA 1FURA 1T6PA 3NZ4A 3TV2A 2X75A 4NLEA 4C6GA 4ADMA 1FUOA 5EYVA 3GTDA 1XWOA 1I0AA 5F91A 1T6JA 5D6BA 3R6YA 4EEIA 1HY1A 1U15A 2J91A 1YFEA 3RD8A 1VDKA 1DCNA 1TJ7A 4CQ5A 1Y2MA 1YFMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J3U A;  1Q5N A;  3BHG A;  1GKM A;  2O7D A;  4NSL A;  3OCE A;  4V2R A;  3QBP A;  1B8F A;  1EB4 A;  2PTR A;  1GK3 A;  1C3C A;  1K62 A;  2O7E A;  3R6V A;  4ADL A;  4BAA A;  2E9F A;  2RJR A;  4HGV A;  4C5S A;  2RJS A;  4APA A;  4C5R A;  2PTQ A;  1C3U A;  5F92 A;  1JSW A;  3C8T A;  5HW2 A;  4C5U A;  5EYT A;  3KDZ A;  3NO9 A;  3RRP A;  3R6Q A;  1KQ7 A;  1FUP A;  1U16 A;  2OHY A;  3GZH A;  1GKJ A;  1YIS A;  4MX2 A;  1DOF A;  4BAB A;  2O7F A;  2NYF A;  3UNV A;  1FUQ A;  2VD6 A;  4FFX A;  2QGA B;  2FUS A;  3CZO A;  1K7W A;  2PFM A;  1AUW A;  2O7B A;  1HY0 A;  3E04 A;  4FLC A;  1TJW A;  1RE5 A;  2HVG A;  2O6Y A;  3KDY A;  1TJV A;  2NYN A;  2QVE A;  2YII A;  3OCF A;  1TJU A;  2PTS A;  4V2Q A;  1GK2 A;  4EFC A;  1W27 A;  2O78 A;  4APB A;  1FUR A;  1T6P A;  3NZ4 A;  3TV2 A;  2X75 A;  4NLE A;  4C6G A;  4ADM A;  1FUO A;  5EYV A;  3GTD A;  1XWO A;  1I0A A;  5F91 A;  1T6J A;  5D6B A;  3R6Y A;  4EEI A;  1HY1 A;  1U15 A;  2J91 A;  1YFE A;  3RD8 A;  1VDK A;  1DCN A;  1TJ7 A;  4CQ5 A;  1Y2M A;  1YFM A; 
#chains in the Genus database with same CATH topology
 1J3U A;  1Q5N A;  3BHG A;  1GKM A;  2O7D A;  3CRW 1;  4NSL A;  3OCE A;  4V2R A;  3QBP A;  1B8F A;  1EB4 A;  2PTR A;  1GK3 A;  1C3C A;  1K62 A;  2O7E A;  3R6V A;  4ADL A;  4BAA A;  2E9F A;  2RJR A;  4HGV A;  4C5S A;  2RJS A;  1XMC A;  2VL7 A;  4APA A;  4C5R A;  2PTQ A;  1C3U A;  5F92 A;  1JSW A;  3C8T A;  5HW2 A;  4C5U A;  5EYT A;  2FEN A;  3KDZ A;  3NO9 A;  3RRP A;  3R6Q A;  1KQ7 A;  5M0J A;  1FUP A;  1U16 A;  2OHY A;  3GZH A;  1GKJ A;  4WNL A;  1YIS A;  4MX2 A;  1DOF A;  4BAB A;  2O7F A;  1XLY A;  4A15 A;  2NYF A;  3UNV A;  1FUQ A;  2VD6 A;  4FFX A;  2QGA B;  2FUS A;  3CZO A;  1K7W A;  2PFM A;  1AUW A;  2O7B A;  1HY0 A;  3E04 A;  4FLC A;  1TJW A;  1RE5 A;  2HVG A;  2O6Y A;  3KDY A;  5H8W A;  1TJV A;  2NYN A;  2QVE A;  2YII A;  3OCF A;  1TJU A;  2PTS A;  2VSF A;  4V2Q A;  1GK2 A;  4EFC A;  1W27 A;  2O78 A;  4APB A;  1FUR A;  1T6P A;  3NZ4 A;  3TV2 A;  2X75 A;  4NLE A;  1XL8 A;  4C6G A;  1XL7 A;  2FEL A;  4ADM A;  1XMD A;  1FUO A;  5EYV A;  3CRV A;  5M0I A;  3GTD A;  1XWO A;  1I0A A;  5F91 A;  1T6J A;  5D6B A;  3R6Y A;  4EEI A;  1HY1 A;  1U15 A;  2J91 A;  1YFE A;  3RD8 A;  1VDK A;  1DCN A;  1TJ7 A;  4CQ5 A;  1Y2M A;  1YFM A; 
#chains in the Genus database with same CATH homology
 1J3U A;  1Q5N A;  3BHG A;  1GKM A;  2O7D A;  4NSL A;  3OCE A;  4V2R A;  3QBP A;  1B8F A;  1EB4 A;  2PTR A;  1GK3 A;  1C3C A;  1K62 A;  2O7E A;  3R6V A;  4ADL A;  4BAA A;  2E9F A;  2RJR A;  4HGV A;  4C5S A;  2RJS A;  4APA A;  4C5R A;  2PTQ A;  1C3U A;  5F92 A;  1JSW A;  3C8T A;  5HW2 A;  4C5U A;  5EYT A;  3KDZ A;  3NO9 A;  3RRP A;  3R6Q A;  1KQ7 A;  1FUP A;  1U16 A;  2OHY A;  3GZH A;  1GKJ A;  1YIS A;  4MX2 A;  1DOF A;  4BAB A;  2O7F A;  2NYF A;  3UNV A;  1FUQ A;  2VD6 A;  4FFX A;  2QGA B;  2FUS A;  3CZO A;  1K7W A;  2PFM A;  1AUW A;  2O7B A;  1HY0 A;  3E04 A;  4FLC A;  1TJW A;  1RE5 A;  2HVG A;  2O6Y A;  3KDY A;  1TJV A;  2NYN A;  2QVE A;  2YII A;  3OCF A;  1TJU A;  2PTS A;  4V2Q A;  1GK2 A;  4EFC A;  1W27 A;  2O78 A;  4APB A;  1FUR A;  1T6P A;  3NZ4 A;  3TV2 A;  2X75 A;  4NLE A;  4C6G A;  4ADM A;  1FUO A;  5EYV A;  3GTD A;  1XWO A;  1I0A A;  5F91 A;  1T6J A;  5D6B A;  3R6Y A;  4EEI A;  1HY1 A;  1U15 A;  2J91 A;  1YFE A;  3RD8 A;  1VDK A;  1DCN A;  1TJ7 A;  4CQ5 A;  1Y2M A;  1YFM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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