3KDZA

X-ray crystal structure of a tyrosine aminomutase mutant construct with bound ligand
Total Genus 198
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
198
sequence length
527
structure length
526
Chain Sequence
VPVSVDGETLTVEAVRRVAEERATVDVPAESIAKAQKSREIFEGIAEQNIPIFGVTTGYGEMIYMQVDKSKEVELQTNLVRSHSAGVGPLFAEDEARAIVAARLNTLAKGHSAVRPIILERLAQYLNEGITPAIPEIGSLGDLAPLSHVASTLIGEGYVLRDGRPVETAQVLAERGIEPLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEAVRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRRELQKDKEAGKDVQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLFFEGKEIFHGANFHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSGDPGLHSGFAGAQYPATALVAENRTIGPASTQSVPSNGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAAAQAVDISGRFDGLSPAAKATYEAVRRLVPTLGVDRYMADDIELVADALSRGEFLRAIARETDIQLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords Histidine ammonia-lyase
publication title Probing the active site of MIO-dependent aminomutases, key catalysts in the biosynthesis of beta-amino acids incorporated in secondary metabolites
pubmed doi rcsb
source organism Streptomyces globisporus
total genus 198
structure length 526
sequence length 527
chains with identical sequence B
ec nomenclature ec 4.3.1.23: Tyrosine ammonia-lyase.
pdb deposition date 2009-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3kdzA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3kdzA02
2QGAB 4NLEA 4ADLA 1I0AA 1GK3A 2HVGA 4ADMA 1T6PA 1W27A 3NZ4A 3OCFA 3TV2A 1FUQA 3RRPA 5EYVA 2QVEA 5F92A 4BABA 3QBPA 2PTSA 2NYFA 2O7EA 4V2QA 1C3CA 2O6YA 3R6YA 4FFXA 1J3UA 1HY1A 1T6JA 1U15A 1KQ7A 4BAAA 4C5SA 1C3UA 1U16A 3KDZA 2E9FA 1YISA 1TJUA 2RJRA 2VD6A 1XWOA 4MX2A 1GKJA 1GK2A 1AUWA 2O7DA 3E04A 4C5UA 4EFCA 3KDYA 4V2RA 5F91A 3BHGA 1TJVA 3GZHA 3RD8A 1VDKA 3C8TA 1TJWA 4FLCA 2OHYA 5HW2A 3UNVA 1GKMA 1K7WA 3GTDA 1Q5NA 2O7BA 1DOFA 3OCEA 4EEIA 2X75A 1EB4A 2PTRA 4APBA 2YIIA 2O7FA 2PTQA 3R6VA 4C5RA 1FUOA 1K62A 3NO9A 4APAA 2NYNA 1TJ7A 4C6GA 4HGVA 2RJSA 1YFEA 2FUSA 3CZOA 1HY0A 1DCNA 1JSWA 2PFMA 2J91A 5D6BA 3R6QA 4CQ5A 1FURA 1B8FA 5EYTA 2O78A 1Y2MA 1RE5A 4NSLA 1YFMA 1FUPA
chains in the Genus database with same CATH superfamily
2QGAB 4NLEA 4ADLA 1I0AA 1GK3A 1XMDA 2HVGA 4ADMA 1T6PA 1W27A 3NZ4A 3OCFA 3TV2A 1FUQA 3RRPA 5EYVA 2QVEA 5F92A 4BABA 3QBPA 2PTSA 2NYFA 2O7EA 4V2QA 1C3CA 2O6YA 3R6YA 4FFXA 1J3UA 1HY1A 1T6JA 1U15A 1KQ7A 4BAAA 4C5SA 1C3UA 1U16A 3KDZA 2E9FA 1YISA 1TJUA 2RJRA 2VD6A 2FENA 5H8WA 1XWOA 4MX2A 1GKJA 1GK2A 2VSFA 1AUWA 2O7DA 3E04A 4C5UA 4EFCA 3KDYA 4V2RA 5F91A 3BHGA 1TJVA 3GZHA 3RD8A 1VDKA 3C8TA 1TJWA 4FLCA 5M0JA 2OHYA 5HW2A 3UNVA 1GKMA 1XL7A 1K7WA 1XMCA 4A15A 3GTDA 1Q5NA 2O7BA 1DOFA 3OCEA 4EEIA 5M0IA 2X75A 1EB4A 2PTRA 4APBA 2YIIA 2O7FA 2PTQA 3R6VA 4C5RA 1FUOA 1K62A 3NO9A 2VL7A 1XL8A 4APAA 2NYNA 1TJ7A 3CRVA 4C6GA 4HGVA 2RJSA 1YFEA 2FUSA 3CZOA 1HY0A 1DCNA 1JSWA 2PFMA 2J91A 1XLYA 5D6BA 3R6QA 4CQ5A 1FURA 1B8FA 5EYTA 3CRW1 2O78A 1Y2MA 1RE5A 2FELA 4NSLA 1YFMA 1FUPA 4WNLA
chains in the Genus database with same CATH topology
2QGAB 4NLEA 4ADLA 1I0AA 1GK3A 2HVGA 4ADMA 1T6PA 1W27A 3NZ4A 3OCFA 3TV2A 1FUQA 3RRPA 5EYVA 2QVEA 5F92A 4BABA 3QBPA 2PTSA 2NYFA 2O7EA 4V2QA 1C3CA 2O6YA 3R6YA 4FFXA 1J3UA 1HY1A 1T6JA 1U15A 1KQ7A 4BAAA 4C5SA 1C3UA 1U16A 3KDZA 2E9FA 1YISA 1TJUA 2RJRA 2VD6A 1XWOA 4MX2A 1GKJA 1GK2A 1AUWA 2O7DA 3E04A 4C5UA 4EFCA 3KDYA 4V2RA 5F91A 3BHGA 1TJVA 3GZHA 3RD8A 1VDKA 3C8TA 1TJWA 4FLCA 2OHYA 5HW2A 3UNVA 1GKMA 1K7WA 3GTDA 1Q5NA 2O7BA 1DOFA 3OCEA 4EEIA 2X75A 1EB4A 2PTRA 4APBA 2YIIA 2O7FA 2PTQA 3R6VA 4C5RA 1FUOA 1K62A 3NO9A 4APAA 2NYNA 1TJ7A 4C6GA 4HGVA 2RJSA 1YFEA 2FUSA 3CZOA 1HY0A 1DCNA 1JSWA 2PFMA 2J91A 5D6BA 3R6QA 4CQ5A 1FURA 1B8FA 5EYTA 2O78A 1Y2MA 1RE5A 4NSLA 1YFMA 1FUPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QGA B;  4NLE A;  4ADL A;  1I0A A;  1GK3 A;  2HVG A;  4ADM A;  1T6P A;  1W27 A;  3NZ4 A;  3OCF A;  3TV2 A;  1FUQ A;  3RRP A;  5EYV A;  2QVE A;  5F92 A;  4BAB A;  3QBP A;  2PTS A;  2NYF A;  2O7E A;  4V2Q A;  1C3C A;  2O6Y A;  3R6Y A;  4FFX A;  1J3U A;  1HY1 A;  1T6J A;  1U15 A;  1KQ7 A;  4BAA A;  4C5S A;  1C3U A;  1U16 A;  3KDZ A;  2E9F A;  1YIS A;  1TJU A;  2RJR A;  2VD6 A;  1XWO A;  4MX2 A;  1GKJ A;  1GK2 A;  1AUW A;  2O7D A;  3E04 A;  4C5U A;  4EFC A;  3KDY A;  4V2R A;  5F91 A;  3BHG A;  1TJV A;  3GZH A;  3RD8 A;  1VDK A;  3C8T A;  1TJW A;  4FLC A;  2OHY A;  5HW2 A;  3UNV A;  1GKM A;  1K7W A;  3GTD A;  1Q5N A;  2O7B A;  1DOF A;  3OCE A;  4EEI A;  2X75 A;  1EB4 A;  2PTR A;  4APB A;  2YII A;  2O7F A;  2PTQ A;  3R6V A;  4C5R A;  1FUO A;  1K62 A;  3NO9 A;  4APA A;  2NYN A;  1TJ7 A;  4C6G A;  4HGV A;  2RJS A;  1YFE A;  2FUS A;  3CZO A;  1HY0 A;  1DCN A;  1JSW A;  2PFM A;  2J91 A;  5D6B A;  3R6Q A;  4CQ5 A;  1FUR A;  1B8F A;  5EYT A;  2O78 A;  1Y2M A;  1RE5 A;  4NSL A;  1YFM A;  1FUP A; 
#chains in the Genus database with same CATH topology
 2QGA B;  4NLE A;  4ADL A;  1I0A A;  1GK3 A;  1XMD A;  2HVG A;  4ADM A;  1T6P A;  1W27 A;  3NZ4 A;  3OCF A;  3TV2 A;  1FUQ A;  3RRP A;  5EYV A;  2QVE A;  5F92 A;  4BAB A;  3QBP A;  2PTS A;  2NYF A;  2O7E A;  4V2Q A;  1C3C A;  2O6Y A;  3R6Y A;  4FFX A;  1J3U A;  1HY1 A;  1T6J A;  1U15 A;  1KQ7 A;  4BAA A;  4C5S A;  1C3U A;  1U16 A;  3KDZ A;  2E9F A;  1YIS A;  1TJU A;  2RJR A;  2VD6 A;  2FEN A;  5H8W A;  1XWO A;  4MX2 A;  1GKJ A;  1GK2 A;  2VSF A;  1AUW A;  2O7D A;  3E04 A;  4C5U A;  4EFC A;  3KDY A;  4V2R A;  5F91 A;  3BHG A;  1TJV A;  3GZH A;  3RD8 A;  1VDK A;  3C8T A;  1TJW A;  4FLC A;  5M0J A;  2OHY A;  5HW2 A;  3UNV A;  1GKM A;  1XL7 A;  1K7W A;  1XMC A;  4A15 A;  3GTD A;  1Q5N A;  2O7B A;  1DOF A;  3OCE A;  4EEI A;  5M0I A;  2X75 A;  1EB4 A;  2PTR A;  4APB A;  2YII A;  2O7F A;  2PTQ A;  3R6V A;  4C5R A;  1FUO A;  1K62 A;  3NO9 A;  2VL7 A;  1XL8 A;  4APA A;  2NYN A;  1TJ7 A;  3CRV A;  4C6G A;  4HGV A;  2RJS A;  1YFE A;  2FUS A;  3CZO A;  1HY0 A;  1DCN A;  1JSW A;  2PFM A;  2J91 A;  1XLY A;  5D6B A;  3R6Q A;  4CQ5 A;  1FUR A;  1B8F A;  5EYT A;  3CRW 1;  2O78 A;  1Y2M A;  1RE5 A;  2FEL A;  4NSL A;  1YFM A;  1FUP A;  4WNL A; 
#chains in the Genus database with same CATH homology
 2QGA B;  4NLE A;  4ADL A;  1I0A A;  1GK3 A;  2HVG A;  4ADM A;  1T6P A;  1W27 A;  3NZ4 A;  3OCF A;  3TV2 A;  1FUQ A;  3RRP A;  5EYV A;  2QVE A;  5F92 A;  4BAB A;  3QBP A;  2PTS A;  2NYF A;  2O7E A;  4V2Q A;  1C3C A;  2O6Y A;  3R6Y A;  4FFX A;  1J3U A;  1HY1 A;  1T6J A;  1U15 A;  1KQ7 A;  4BAA A;  4C5S A;  1C3U A;  1U16 A;  3KDZ A;  2E9F A;  1YIS A;  1TJU A;  2RJR A;  2VD6 A;  1XWO A;  4MX2 A;  1GKJ A;  1GK2 A;  1AUW A;  2O7D A;  3E04 A;  4C5U A;  4EFC A;  3KDY A;  4V2R A;  5F91 A;  3BHG A;  1TJV A;  3GZH A;  3RD8 A;  1VDK A;  3C8T A;  1TJW A;  4FLC A;  2OHY A;  5HW2 A;  3UNV A;  1GKM A;  1K7W A;  3GTD A;  1Q5N A;  2O7B A;  1DOF A;  3OCE A;  4EEI A;  2X75 A;  1EB4 A;  2PTR A;  4APB A;  2YII A;  2O7F A;  2PTQ A;  3R6V A;  4C5R A;  1FUO A;  1K62 A;  3NO9 A;  4APA A;  2NYN A;  1TJ7 A;  4C6G A;  4HGV A;  2RJS A;  1YFE A;  2FUS A;  3CZO A;  1HY0 A;  1DCN A;  1JSW A;  2PFM A;  2J91 A;  5D6B A;  3R6Q A;  4CQ5 A;  1FUR A;  1B8F A;  5EYT A;  2O78 A;  1Y2M A;  1RE5 A;  4NSL A;  1YFM A;  1FUP A; 
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