3KDYA

X-ray crystal structure of tyrosine aminomutase mutant construct
Total Genus 195
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
195
sequence length
527
structure length
526
Chain Sequence
VPVSVDGETLTVEAVRRVAEERATVDVPAESIAKAQKSREIFEGIAEQNIPIYGVTTGYGAMIYMQVDKSKEVELQTNLVRSHSAGVGPLFAEDEARAIVAARLNTLAKGHSAVRPIILERLAQYLNEGITPAIPEIGSLGDLAPLSHVASTLIGEGYVLRDGRPVETAQVLAERGIEPLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEAVRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRRELQKDKEAGKDVQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLFFEGKEIFHGANFHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSGDPGLHSGFAGAQYPATALVAENRTIGPASTQSVPSNGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAAAQAVDISGRFDGLSPAAKATYEAVRRLVPTLGVDRYMADDIELVADALSRGEFLRAIARETDIQLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Streptomyces globisporus
publication title Probing the active site of MIO-dependent aminomutases, key catalysts in the biosynthesis of beta-amino acids incorporated in secondary metabolites
pubmed doi rcsb
molecule keywords Histidine ammonia-lyase
total genus 195
structure length 526
sequence length 527
chains with identical sequence B
ec nomenclature ec 4.3.1.23: Tyrosine ammonia-lyase.
pdb deposition date 2009-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3kdyA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3kdyA02
2PFMA 4HGVA 2OHYA 5EYVA 1GKJA 1YISA 4NLEA 1TJVA 4V2RA 1KQ7A 3NZ4A 5D6BA 4BAAA 1B8FA 3TV2A 1AUWA 4EEIA 1Q5NA 1U15A 3KDZA 3OCFA 2RJRA 3NO9A 3GZHA 5F91A 1K7WA 4NSLA 2NYNA 2PTRA 2PTSA 3C8TA 2O7DA 3R6QA 3UNVA 2PTQA 1FUPA 1Y2MA 2O7BA 1C3UA 4C6GA 1RE5A 3E04A 2HVGA 1FUOA 1JSWA 2J91A 4BABA 3RD8A 4APBA 2QGAB 2O6YA 2O7FA 4C5SA 3R6VA 1HY1A 4V2QA 3RRPA 4FFXA 3OCEA 4ADMA 4APAA 2QVEA 1FUQA 1VDKA 2X75A 3KDYA 3GTDA 2O78A 2NYFA 1T6JA 3QBPA 2YIIA 3CZOA 1YFEA 5F92A 1GK2A 5HW2A 4ADLA 1EB4A 1C3CA 4FLCA 3R6YA 1HY0A 1TJWA 4C5UA 1GK3A 1YFMA 1J3UA 4C5RA 1DCNA 1XWOA 2E9FA 2VD6A 4CQ5A 1I0AA 1T6PA 1DOFA 1FURA 2FUSA 2RJSA 2O7EA 1TJ7A 1K62A 1GKMA 1TJUA 1W27A 1U16A 3BHGA 4MX2A 5EYTA 4EFCA
chains in the Genus database with same CATH superfamily
2PFMA 4HGVA 2OHYA 5EYVA 1GKJA 1YISA 4NLEA 1TJVA 4V2RA 4WNLA 1KQ7A 3NZ4A 5D6BA 4BAAA 1B8FA 3TV2A 1AUWA 1XMCA 4EEIA 2VL7A 1Q5NA 1XMDA 1U15A 1XL8A 3KDZA 3OCFA 2RJRA 3NO9A 3GZHA 5F91A 1K7WA 4NSLA 2NYNA 2PTRA 2PTSA 3C8TA 2O7DA 3R6QA 3UNVA 2PTQA 1FUPA 3CRW1 1Y2MA 2O7BA 1C3UA 4C6GA 1RE5A 3E04A 2HVGA 1FUOA 1JSWA 5M0IA 2J91A 4BABA 3RD8A 4APBA 2QGAB 2O6YA 2O7FA 4C5SA 3CRVA 5M0JA 3R6VA 2FENA 1HY1A 4V2QA 3RRPA 4FFXA 3OCEA 4ADMA 4APAA 2QVEA 1FUQA 1VDKA 2X75A 3KDYA 3GTDA 1XLYA 2O78A 2NYFA 1T6JA 3QBPA 1XL7A 2YIIA 3CZOA 1YFEA 5F92A 1GK2A 5HW2A 4ADLA 1EB4A 1C3CA 4FLCA 3R6YA 1HY0A 1TJWA 4C5UA 1GK3A 1YFMA 1J3UA 4C5RA 5H8WA 1DCNA 1XWOA 2E9FA 2VD6A 2VSFA 1I0AA 1T6PA 4CQ5A 1DOFA 1FURA 2FUSA 2RJSA 2O7EA 1TJ7A 1K62A 1GKMA 1TJUA 1W27A 1U16A 3BHGA 4MX2A 5EYTA 4EFCA 2FELA 4A15A
chains in the Genus database with same CATH topology
2PFMA 4HGVA 2OHYA 5EYVA 1GKJA 1YISA 4NLEA 1TJVA 4V2RA 1KQ7A 3NZ4A 5D6BA 4BAAA 1B8FA 3TV2A 1AUWA 4EEIA 1Q5NA 1U15A 3KDZA 3OCFA 2RJRA 3NO9A 3GZHA 5F91A 1K7WA 4NSLA 2NYNA 2PTRA 2PTSA 3C8TA 2O7DA 3R6QA 3UNVA 2PTQA 1FUPA 1Y2MA 2O7BA 1C3UA 4C6GA 1RE5A 3E04A 2HVGA 1FUOA 1JSWA 2J91A 4BABA 3RD8A 4APBA 2QGAB 2O6YA 2O7FA 4C5SA 3R6VA 1HY1A 4V2QA 3RRPA 4FFXA 3OCEA 4ADMA 4APAA 2QVEA 1FUQA 1VDKA 2X75A 3KDYA 3GTDA 2O78A 2NYFA 1T6JA 3QBPA 2YIIA 3CZOA 1YFEA 5F92A 1GK2A 5HW2A 4ADLA 1EB4A 1C3CA 4FLCA 3R6YA 1HY0A 1TJWA 4C5UA 1GK3A 1YFMA 1J3UA 4C5RA 1DCNA 1XWOA 2E9FA 2VD6A 4CQ5A 1I0AA 1T6PA 1DOFA 1FURA 2FUSA 2RJSA 2O7EA 1TJ7A 1K62A 1GKMA 1TJUA 1W27A 1U16A 3BHGA 4MX2A 5EYTA 4EFCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PFM A;  4HGV A;  2OHY A;  5EYV A;  1GKJ A;  1YIS A;  4NLE A;  1TJV A;  4V2R A;  1KQ7 A;  3NZ4 A;  5D6B A;  4BAA A;  1B8F A;  3TV2 A;  1AUW A;  4EEI A;  1Q5N A;  1U15 A;  3KDZ A;  3OCF A;  2RJR A;  3NO9 A;  3GZH A;  5F91 A;  1K7W A;  4NSL A;  2NYN A;  2PTR A;  2PTS A;  3C8T A;  2O7D A;  3R6Q A;  3UNV A;  2PTQ A;  1FUP A;  1Y2M A;  2O7B A;  1C3U A;  4C6G A;  1RE5 A;  3E04 A;  2HVG A;  1FUO A;  1JSW A;  2J91 A;  4BAB A;  3RD8 A;  4APB A;  2QGA B;  2O6Y A;  2O7F A;  4C5S A;  3R6V A;  1HY1 A;  4V2Q A;  3RRP A;  4FFX A;  3OCE A;  4ADM A;  4APA A;  2QVE A;  1FUQ A;  1VDK A;  2X75 A;  3KDY A;  3GTD A;  2O78 A;  2NYF A;  1T6J A;  3QBP A;  2YII A;  3CZO A;  1YFE A;  5F92 A;  1GK2 A;  5HW2 A;  4ADL A;  1EB4 A;  1C3C A;  4FLC A;  3R6Y A;  1HY0 A;  1TJW A;  4C5U A;  1GK3 A;  1YFM A;  1J3U A;  4C5R A;  1DCN A;  1XWO A;  2E9F A;  2VD6 A;  4CQ5 A;  1I0A A;  1T6P A;  1DOF A;  1FUR A;  2FUS A;  2RJS A;  2O7E A;  1TJ7 A;  1K62 A;  1GKM A;  1TJU A;  1W27 A;  1U16 A;  3BHG A;  4MX2 A;  5EYT A;  4EFC A; 
#chains in the Genus database with same CATH topology
 2PFM A;  4HGV A;  2OHY A;  5EYV A;  1GKJ A;  1YIS A;  4NLE A;  1TJV A;  4V2R A;  4WNL A;  1KQ7 A;  3NZ4 A;  5D6B A;  4BAA A;  1B8F A;  3TV2 A;  1AUW A;  1XMC A;  4EEI A;  2VL7 A;  1Q5N A;  1XMD A;  1U15 A;  1XL8 A;  3KDZ A;  3OCF A;  2RJR A;  3NO9 A;  3GZH A;  5F91 A;  1K7W A;  4NSL A;  2NYN A;  2PTR A;  2PTS A;  3C8T A;  2O7D A;  3R6Q A;  3UNV A;  2PTQ A;  1FUP A;  3CRW 1;  1Y2M A;  2O7B A;  1C3U A;  4C6G A;  1RE5 A;  3E04 A;  2HVG A;  1FUO A;  1JSW A;  5M0I A;  2J91 A;  4BAB A;  3RD8 A;  4APB A;  2QGA B;  2O6Y A;  2O7F A;  4C5S A;  3CRV A;  5M0J A;  3R6V A;  2FEN A;  1HY1 A;  4V2Q A;  3RRP A;  4FFX A;  3OCE A;  4ADM A;  4APA A;  2QVE A;  1FUQ A;  1VDK A;  2X75 A;  3KDY A;  3GTD A;  1XLY A;  2O78 A;  2NYF A;  1T6J A;  3QBP A;  1XL7 A;  2YII A;  3CZO A;  1YFE A;  5F92 A;  1GK2 A;  5HW2 A;  4ADL A;  1EB4 A;  1C3C A;  4FLC A;  3R6Y A;  1HY0 A;  1TJW A;  4C5U A;  1GK3 A;  1YFM A;  1J3U A;  4C5R A;  5H8W A;  1DCN A;  1XWO A;  2E9F A;  2VD6 A;  2VSF A;  1I0A A;  1T6P A;  4CQ5 A;  1DOF A;  1FUR A;  2FUS A;  2RJS A;  2O7E A;  1TJ7 A;  1K62 A;  1GKM A;  1TJU A;  1W27 A;  1U16 A;  3BHG A;  4MX2 A;  5EYT A;  4EFC A;  2FEL A;  4A15 A; 
#chains in the Genus database with same CATH homology
 2PFM A;  4HGV A;  2OHY A;  5EYV A;  1GKJ A;  1YIS A;  4NLE A;  1TJV A;  4V2R A;  1KQ7 A;  3NZ4 A;  5D6B A;  4BAA A;  1B8F A;  3TV2 A;  1AUW A;  4EEI A;  1Q5N A;  1U15 A;  3KDZ A;  3OCF A;  2RJR A;  3NO9 A;  3GZH A;  5F91 A;  1K7W A;  4NSL A;  2NYN A;  2PTR A;  2PTS A;  3C8T A;  2O7D A;  3R6Q A;  3UNV A;  2PTQ A;  1FUP A;  1Y2M A;  2O7B A;  1C3U A;  4C6G A;  1RE5 A;  3E04 A;  2HVG A;  1FUO A;  1JSW A;  2J91 A;  4BAB A;  3RD8 A;  4APB A;  2QGA B;  2O6Y A;  2O7F A;  4C5S A;  3R6V A;  1HY1 A;  4V2Q A;  3RRP A;  4FFX A;  3OCE A;  4ADM A;  4APA A;  2QVE A;  1FUQ A;  1VDK A;  2X75 A;  3KDY A;  3GTD A;  2O78 A;  2NYF A;  1T6J A;  3QBP A;  2YII A;  3CZO A;  1YFE A;  5F92 A;  1GK2 A;  5HW2 A;  4ADL A;  1EB4 A;  1C3C A;  4FLC A;  3R6Y A;  1HY0 A;  1TJW A;  4C5U A;  1GK3 A;  1YFM A;  1J3U A;  4C5R A;  1DCN A;  1XWO A;  2E9F A;  2VD6 A;  4CQ5 A;  1I0A A;  1T6P A;  1DOF A;  1FUR A;  2FUS A;  2RJS A;  2O7E A;  1TJ7 A;  1K62 A;  1GKM A;  1TJU A;  1W27 A;  1U16 A;  3BHG A;  4MX2 A;  5EYT A;  4EFC A; 
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