3KDYA

X-ray crystal structure of tyrosine aminomutase mutant construct
Total Genus 195
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
195
sequence length
527
structure length
526
Chain Sequence
VPVSVDGETLTVEAVRRVAEERATVDVPAESIAKAQKSREIFEGIAEQNIPIYGVTTGYGAMIYMQVDKSKEVELQTNLVRSHSAGVGPLFAEDEARAIVAARLNTLAKGHSAVRPIILERLAQYLNEGITPAIPEIGSLGDLAPLSHVASTLIGEGYVLRDGRPVETAQVLAERGIEPLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEAVRGSTSPFLAEGHDIARPHEGQIDTAANMRALMRGSGLTVEHADLRRELQKDKEAGKDVQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRIELNSANDNPLFFEGKEIFHGANFHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSGDPGLHSGFAGAQYPATALVAENRTIGPASTQSVPSNGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAAAQAVDISGRFDGLSPAAKATYEAVRRLVPTLGVDRYMADDIELVADALSRGEFLRAIARETDIQLR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Histidine ammonia-lyase
publication title Probing the active site of MIO-dependent aminomutases, key catalysts in the biosynthesis of beta-amino acids incorporated in secondary metabolites
pubmed doi rcsb
source organism Streptomyces globisporus
molecule tags Lyase
total genus 195
structure length 526
sequence length 527
chains with identical sequence B
ec nomenclature ec 4.3.1.23: Tyrosine ammonia-lyase.
pdb deposition date 2009-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3kdyA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3kdyA02
1VDKA 1EB4A 2O6YA 3NO9A 4APAA 1XWOA 4BABA 2O7FA 3R6VA 1TJWA 3KDZA 1U16A 2PTRA 1U15A 3RD8A 5D6BA 5EYTA 2PTQA 1DOFA 2O7EA 4FFXA 4HGVA 1RE5A 1TJVA 1FUOA 4APBA 2O78A 1FUPA 4EFCA 3E04A 2O7BA 4C6GA 2NYFA 1K62A 4C5UA 1HY0A 3KDYA 1C3CA 1DCNA 1Q5NA 5F92A 3C8TA 1GKJA 2J91A 2X75A 1HY1A 3QBPA 4CQ5A 4NLEA 1B8FA 3TV2A 4FLCA 1YFEA 2OHYA 1Y2MA 1K7WA 3UNVA 1AUWA 1T6JA 3OCFA 1YISA 2QVEA 1GKMA 1YFMA 3BHGA 2YIIA 4C5SA 3GZHA 2FUSA 3OCEA 1I0AA 1W27A 2RJSA 2E9FA 4ADLA 2NYNA 3R6YA 2QGAB 2PFMA 4V2RA 1TJUA 3NZ4A 3GTDA 1FUQA 2O7DA 4NSLA 4EEIA 2HVGA 1JSWA 2PTSA 4BAAA 3CZOA 2RJRA 1FURA 1J3UA 5HW2A 1TJ7A 4ADMA 1C3UA 4MX2A 2VD6A 1GK2A 4C5RA 1T6PA 5F91A 3RRPA 4V2QA 1GK3A 5EYVA 1KQ7A 3R6QA
chains in the Genus database with same CATH superfamily
1VDKA 1EB4A 2O6YA 3NO9A 4APAA 1XWOA 4BABA 2O7FA 2VSFA 3R6VA 1TJWA 3KDZA 1U16A 2PTRA 1U15A 3RD8A 5D6BA 5EYTA 2PTQA 1DOFA 2O7EA 3CRVA 4FFXA 4HGVA 1RE5A 2VL7A 1TJVA 1FUOA 4APBA 2O78A 1FUPA 4EFCA 3E04A 2O7BA 1XMCA 4C6GA 2NYFA 1XL8A 1K62A 4C5UA 1HY0A 3KDYA 1C3CA 1DCNA 1Q5NA 5F92A 3C8TA 1GKJA 2J91A 2X75A 1HY1A 3QBPA 4CQ5A 4NLEA 1B8FA 3TV2A 4FLCA 1YFEA 2OHYA 1Y2MA 1K7WA 3UNVA 1AUWA 5M0IA 1T6JA 3OCFA 1YISA 2QVEA 1GKMA 1YFMA 1XLYA 3BHGA 1XL7A 2YIIA 4C5SA 3GZHA 2FUSA 3OCEA 1I0AA 1W27A 2E9FA 2RJSA 4ADLA 2FELA 2NYNA 3R6YA 2QGAB 2PFMA 4V2RA 1TJUA 3NZ4A 5M0JA 3GTDA 1XMDA 1FUQA 2O7DA 4NSLA 4EEIA 2HVGA 1JSWA 5H8WA 2PTSA 4BAAA 4A15A 3CZOA 2RJRA 1FURA 1J3UA 5HW2A 1TJ7A 2FENA 4ADMA 1C3UA 4MX2A 2VD6A 1GK2A 4C5RA 1T6PA 5F91A 3RRPA 4V2QA 1GK3A 5EYVA 3CRW1 1KQ7A 4WNLA 3R6QA
chains in the Genus database with same CATH topology
1VDKA 1EB4A 2O6YA 3NO9A 4APAA 1XWOA 4BABA 2O7FA 3R6VA 1TJWA 3KDZA 1U16A 2PTRA 1U15A 3RD8A 5D6BA 5EYTA 2PTQA 1DOFA 2O7EA 4FFXA 4HGVA 1RE5A 1TJVA 1FUOA 4APBA 2O78A 1FUPA 4EFCA 3E04A 2O7BA 4C6GA 2NYFA 1K62A 4C5UA 1HY0A 3KDYA 1C3CA 1DCNA 1Q5NA 5F92A 3C8TA 1GKJA 2J91A 2X75A 1HY1A 3QBPA 4CQ5A 4NLEA 1B8FA 3TV2A 4FLCA 1YFEA 2OHYA 1Y2MA 1K7WA 3UNVA 1AUWA 1T6JA 3OCFA 1YISA 2QVEA 1GKMA 1YFMA 3BHGA 2YIIA 4C5SA 3GZHA 2FUSA 3OCEA 1I0AA 1W27A 2RJSA 2E9FA 4ADLA 2NYNA 3R6YA 2QGAB 2PFMA 4V2RA 1TJUA 3NZ4A 3GTDA 1FUQA 2O7DA 4NSLA 4EEIA 2HVGA 1JSWA 2PTSA 4BAAA 3CZOA 2RJRA 1FURA 1J3UA 5HW2A 1TJ7A 4ADMA 1C3UA 4MX2A 2VD6A 1GK2A 4C5RA 1T6PA 5F91A 3RRPA 4V2QA 1GK3A 5EYVA 1KQ7A 3R6QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VDK A;  1EB4 A;  2O6Y A;  3NO9 A;  4APA A;  1XWO A;  4BAB A;  2O7F A;  3R6V A;  1TJW A;  3KDZ A;  1U16 A;  2PTR A;  1U15 A;  3RD8 A;  5D6B A;  5EYT A;  2PTQ A;  1DOF A;  2O7E A;  4FFX A;  4HGV A;  1RE5 A;  1TJV A;  1FUO A;  4APB A;  2O78 A;  1FUP A;  4EFC A;  3E04 A;  2O7B A;  4C6G A;  2NYF A;  1K62 A;  4C5U A;  1HY0 A;  3KDY A;  1C3C A;  1DCN A;  1Q5N A;  5F92 A;  3C8T A;  1GKJ A;  2J91 A;  2X75 A;  1HY1 A;  3QBP A;  4CQ5 A;  4NLE A;  1B8F A;  3TV2 A;  4FLC A;  1YFE A;  2OHY A;  1Y2M A;  1K7W A;  3UNV A;  1AUW A;  1T6J A;  3OCF A;  1YIS A;  2QVE A;  1GKM A;  1YFM A;  3BHG A;  2YII A;  4C5S A;  3GZH A;  2FUS A;  3OCE A;  1I0A A;  1W27 A;  2RJS A;  2E9F A;  4ADL A;  2NYN A;  3R6Y A;  2QGA B;  2PFM A;  4V2R A;  1TJU A;  3NZ4 A;  3GTD A;  1FUQ A;  2O7D A;  4NSL A;  4EEI A;  2HVG A;  1JSW A;  2PTS A;  4BAA A;  3CZO A;  2RJR A;  1FUR A;  1J3U A;  5HW2 A;  1TJ7 A;  4ADM A;  1C3U A;  4MX2 A;  2VD6 A;  1GK2 A;  4C5R A;  1T6P A;  5F91 A;  3RRP A;  4V2Q A;  1GK3 A;  5EYV A;  1KQ7 A;  3R6Q A; 
#chains in the Genus database with same CATH topology
 1VDK A;  1EB4 A;  2O6Y A;  3NO9 A;  4APA A;  1XWO A;  4BAB A;  2O7F A;  2VSF A;  3R6V A;  1TJW A;  3KDZ A;  1U16 A;  2PTR A;  1U15 A;  3RD8 A;  5D6B A;  5EYT A;  2PTQ A;  1DOF A;  2O7E A;  3CRV A;  4FFX A;  4HGV A;  1RE5 A;  2VL7 A;  1TJV A;  1FUO A;  4APB A;  2O78 A;  1FUP A;  4EFC A;  3E04 A;  2O7B A;  1XMC A;  4C6G A;  2NYF A;  1XL8 A;  1K62 A;  4C5U A;  1HY0 A;  3KDY A;  1C3C A;  1DCN A;  1Q5N A;  5F92 A;  3C8T A;  1GKJ A;  2J91 A;  2X75 A;  1HY1 A;  3QBP A;  4CQ5 A;  4NLE A;  1B8F A;  3TV2 A;  4FLC A;  1YFE A;  2OHY A;  1Y2M A;  1K7W A;  3UNV A;  1AUW A;  5M0I A;  1T6J A;  3OCF A;  1YIS A;  2QVE A;  1GKM A;  1YFM A;  1XLY A;  3BHG A;  1XL7 A;  2YII A;  4C5S A;  3GZH A;  2FUS A;  3OCE A;  1I0A A;  1W27 A;  2E9F A;  2RJS A;  4ADL A;  2FEL A;  2NYN A;  3R6Y A;  2QGA B;  2PFM A;  4V2R A;  1TJU A;  3NZ4 A;  5M0J A;  3GTD A;  1XMD A;  1FUQ A;  2O7D A;  4NSL A;  4EEI A;  2HVG A;  1JSW A;  5H8W A;  2PTS A;  4BAA A;  4A15 A;  3CZO A;  2RJR A;  1FUR A;  1J3U A;  5HW2 A;  1TJ7 A;  2FEN A;  4ADM A;  1C3U A;  4MX2 A;  2VD6 A;  1GK2 A;  4C5R A;  1T6P A;  5F91 A;  3RRP A;  4V2Q A;  1GK3 A;  5EYV A;  3CRW 1;  1KQ7 A;  4WNL A;  3R6Q A; 
#chains in the Genus database with same CATH homology
 1VDK A;  1EB4 A;  2O6Y A;  3NO9 A;  4APA A;  1XWO A;  4BAB A;  2O7F A;  3R6V A;  1TJW A;  3KDZ A;  1U16 A;  2PTR A;  1U15 A;  3RD8 A;  5D6B A;  5EYT A;  2PTQ A;  1DOF A;  2O7E A;  4FFX A;  4HGV A;  1RE5 A;  1TJV A;  1FUO A;  4APB A;  2O78 A;  1FUP A;  4EFC A;  3E04 A;  2O7B A;  4C6G A;  2NYF A;  1K62 A;  4C5U A;  1HY0 A;  3KDY A;  1C3C A;  1DCN A;  1Q5N A;  5F92 A;  3C8T A;  1GKJ A;  2J91 A;  2X75 A;  1HY1 A;  3QBP A;  4CQ5 A;  4NLE A;  1B8F A;  3TV2 A;  4FLC A;  1YFE A;  2OHY A;  1Y2M A;  1K7W A;  3UNV A;  1AUW A;  1T6J A;  3OCF A;  1YIS A;  2QVE A;  1GKM A;  1YFM A;  3BHG A;  2YII A;  4C5S A;  3GZH A;  2FUS A;  3OCE A;  1I0A A;  1W27 A;  2RJS A;  2E9F A;  4ADL A;  2NYN A;  3R6Y A;  2QGA B;  2PFM A;  4V2R A;  1TJU A;  3NZ4 A;  3GTD A;  1FUQ A;  2O7D A;  4NSL A;  4EEI A;  2HVG A;  1JSW A;  2PTS A;  4BAA A;  3CZO A;  2RJR A;  1FUR A;  1J3U A;  5HW2 A;  1TJ7 A;  4ADM A;  1C3U A;  4MX2 A;  2VD6 A;  1GK2 A;  4C5R A;  1T6P A;  5F91 A;  3RRP A;  4V2Q A;  1GK3 A;  5EYV A;  1KQ7 A;  3R6Q A; 
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