1GK2A

Histidine ammonia-lyase (hal) mutant f329g from pseudomonas putida
Total Genus 194
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
194
sequence length
509
structure length
509
Chain Sequence
b'TELTLKPGTLTLAQLRAIHAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTRIASHDLENLQRSLVLSHAAGIGAPLDDDLVRLIMVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGEGKARYKGQWLSATEALAVAGLEPLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLGSRSPFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHKNADKVQDPYSLRCQPQVMGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNGHAEPVAMAADNLALAIAEIGSLSERRISLMMDKHMSQLPPFLVENGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLRKGLKTSAKLEKARQALRSEVAHYDRDRFFAPDIEKAVELLAKGSLTGLLPAGVLPSL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords HISTIDINE AMMONIA-LYASE
publication title Autocatalytic Peptide Cyclization During Chain Folding of Histidine Ammonia-Lyase.
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Lyase
total genus 194
structure length 509
sequence length 509
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.3: Histidine ammonia-lyase.
pdb deposition date 2001-08-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1gk2A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1gk2A02
4APAA 4C5UA 3TV2A 1TJVA 2NYNA 2HVGA 4C5SA 4FFXA 1TJWA 1TJ7A 3KDYA 1EB4A 3GZHA 2X75A 2O7FA 4EEIA 3R6VA 1JSWA 1XWOA 1FUPA 5F91A 2OHYA 4C5RA 1GKJA 2YIIA 5EYTA 3UNVA 3R6QA 1GKMA 1DCNA 2O7BA 5HW2A 2NYFA 2PTSA 1I0AA 3QBPA 3RD8A 1AUWA 4HGVA 1FURA 1Q5NA 1T6JA 1DOFA 3C8TA 1U16A 2J91A 1C3UA 1K62A 1KQ7A 4BAAA 2O78A 2E9FA 2QGAB 1HY1A 1RE5A 3OCEA 1VDKA 3KDZA 1Y2MA 1K7WA 3NO9A 4MX2A 1U15A 2O6YA 4EFCA 5D6BA 1J3UA 4NLEA 3E04A 2O7DA 1FUQA 4APBA 4V2RA 1YISA 2QVEA 1YFMA 1FUOA 4BABA 3NZ4A 4C6GA 5F92A 1HY0A 1YFEA 1B8FA 3GTDA 1T6PA 2O7EA 2FUSA 2PTQA 5EYVA 3RRPA 4FLCA 3R6YA 3CZOA 4ADLA 4ADMA 4CQ5A 1GK2A 1GK3A 2VD6A 1TJUA 4NSLA 3BHGA 1C3CA 2PTRA 2PFMA 1W27A 2RJSA 4V2QA 2RJRA 3OCFA
chains in the Genus database with same CATH superfamily
4APAA 4C5UA 3TV2A 1TJVA 2NYNA 2HVGA 4C5SA 4FFXA 1TJWA 1TJ7A 3KDYA 5M0IA 1EB4A 3GZHA 2X75A 2O7FA 4EEIA 3R6VA 1JSWA 1XWOA 2FENA 1FUPA 2VSFA 5F91A 2OHYA 4C5RA 1GKJA 2YIIA 5EYTA 3UNVA 3R6QA 1GKMA 1DCNA 2O7BA 5HW2A 2NYFA 2PTSA 1I0AA 3CRW1 3QBPA 3RD8A 1AUWA 4HGVA 1FURA 1Q5NA 1T6JA 1DOFA 3C8TA 1U16A 2J91A 1C3UA 1K62A 1KQ7A 4BAAA 2E9FA 2O78A 2QGAB 2FELA 1HY1A 1RE5A 1XMDA 3OCEA 1VDKA 3CRVA 3KDZA 4A15A 1Y2MA 4WNLA 1K7WA 3NO9A 4MX2A 1U15A 1XMCA 2O6YA 2VL7A 4EFCA 5D6BA 1J3UA 4NLEA 5M0JA 3E04A 2O7DA 1FUQA 4APBA 4V2RA 1XL7A 1YISA 2QVEA 1YFMA 1FUOA 4BABA 3NZ4A 4C6GA 5F92A 1HY0A 1YFEA 1B8FA 3GTDA 1T6PA 2O7EA 2FUSA 1XL8A 2PTQA 5EYVA 3RRPA 4FLCA 1XLYA 3R6YA 3CZOA 4ADLA 4ADMA 4CQ5A 1GK2A 1GK3A 2VD6A 1TJUA 4NSLA 3BHGA 1C3CA 5H8WA 2PTRA 2PFMA 1W27A 2RJSA 4V2QA 2RJRA 3OCFA
chains in the Genus database with same CATH topology
4APAA 4C5UA 3TV2A 1TJVA 2NYNA 2HVGA 4C5SA 4FFXA 1TJWA 1TJ7A 3KDYA 1EB4A 3GZHA 2X75A 2O7FA 4EEIA 3R6VA 1JSWA 1XWOA 1FUPA 5F91A 2OHYA 4C5RA 1GKJA 2YIIA 5EYTA 3UNVA 3R6QA 1GKMA 1DCNA 2O7BA 5HW2A 2NYFA 2PTSA 1I0AA 3QBPA 3RD8A 1AUWA 4HGVA 1FURA 1Q5NA 1T6JA 1DOFA 3C8TA 1U16A 2J91A 1C3UA 1K62A 1KQ7A 4BAAA 2O78A 2E9FA 2QGAB 1HY1A 1RE5A 3OCEA 1VDKA 3KDZA 1Y2MA 1K7WA 3NO9A 4MX2A 1U15A 2O6YA 4EFCA 5D6BA 1J3UA 4NLEA 3E04A 2O7DA 1FUQA 4APBA 4V2RA 1YISA 2QVEA 1YFMA 1FUOA 4BABA 3NZ4A 4C6GA 5F92A 1HY0A 1YFEA 1B8FA 3GTDA 1T6PA 2O7EA 2FUSA 2PTQA 5EYVA 3RRPA 4FLCA 3R6YA 3CZOA 4ADLA 4ADMA 4CQ5A 1GK2A 1GK3A 2VD6A 1TJUA 4NSLA 3BHGA 1C3CA 2PTRA 2PFMA 1W27A 2RJSA 4V2QA 2RJRA 3OCFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4APA A;  4C5U A;  3TV2 A;  1TJV A;  2NYN A;  2HVG A;  4C5S A;  4FFX A;  1TJW A;  1TJ7 A;  3KDY A;  1EB4 A;  3GZH A;  2X75 A;  2O7F A;  4EEI A;  3R6V A;  1JSW A;  1XWO A;  1FUP A;  5F91 A;  2OHY A;  4C5R A;  1GKJ A;  2YII A;  5EYT A;  3UNV A;  3R6Q A;  1GKM A;  1DCN A;  2O7B A;  5HW2 A;  2NYF A;  2PTS A;  1I0A A;  3QBP A;  3RD8 A;  1AUW A;  4HGV A;  1FUR A;  1Q5N A;  1T6J A;  1DOF A;  3C8T A;  1U16 A;  2J91 A;  1C3U A;  1K62 A;  1KQ7 A;  4BAA A;  2O78 A;  2E9F A;  2QGA B;  1HY1 A;  1RE5 A;  3OCE A;  1VDK A;  3KDZ A;  1Y2M A;  1K7W A;  3NO9 A;  4MX2 A;  1U15 A;  2O6Y A;  4EFC A;  5D6B A;  1J3U A;  4NLE A;  3E04 A;  2O7D A;  1FUQ A;  4APB A;  4V2R A;  1YIS A;  2QVE A;  1YFM A;  1FUO A;  4BAB A;  3NZ4 A;  4C6G A;  5F92 A;  1HY0 A;  1YFE A;  1B8F A;  3GTD A;  1T6P A;  2O7E A;  2FUS A;  2PTQ A;  5EYV A;  3RRP A;  4FLC A;  3R6Y A;  3CZO A;  4ADL A;  4ADM A;  4CQ5 A;  1GK2 A;  1GK3 A;  2VD6 A;  1TJU A;  4NSL A;  3BHG A;  1C3C A;  2PTR A;  2PFM A;  1W27 A;  2RJS A;  4V2Q A;  2RJR A;  3OCF A; 
#chains in the Genus database with same CATH topology
 4APA A;  4C5U A;  3TV2 A;  1TJV A;  2NYN A;  2HVG A;  4C5S A;  4FFX A;  1TJW A;  1TJ7 A;  3KDY A;  5M0I A;  1EB4 A;  3GZH A;  2X75 A;  2O7F A;  4EEI A;  3R6V A;  1JSW A;  1XWO A;  2FEN A;  1FUP A;  2VSF A;  5F91 A;  2OHY A;  4C5R A;  1GKJ A;  2YII A;  5EYT A;  3UNV A;  3R6Q A;  1GKM A;  1DCN A;  2O7B A;  5HW2 A;  2NYF A;  2PTS A;  1I0A A;  3CRW 1;  3QBP A;  3RD8 A;  1AUW A;  4HGV A;  1FUR A;  1Q5N A;  1T6J A;  1DOF A;  3C8T A;  1U16 A;  2J91 A;  1C3U A;  1K62 A;  1KQ7 A;  4BAA A;  2E9F A;  2O78 A;  2QGA B;  2FEL A;  1HY1 A;  1RE5 A;  1XMD A;  3OCE A;  1VDK A;  3CRV A;  3KDZ A;  4A15 A;  1Y2M A;  4WNL A;  1K7W A;  3NO9 A;  4MX2 A;  1U15 A;  1XMC A;  2O6Y A;  2VL7 A;  4EFC A;  5D6B A;  1J3U A;  4NLE A;  5M0J A;  3E04 A;  2O7D A;  1FUQ A;  4APB A;  4V2R A;  1XL7 A;  1YIS A;  2QVE A;  1YFM A;  1FUO A;  4BAB A;  3NZ4 A;  4C6G A;  5F92 A;  1HY0 A;  1YFE A;  1B8F A;  3GTD A;  1T6P A;  2O7E A;  2FUS A;  1XL8 A;  2PTQ A;  5EYV A;  3RRP A;  4FLC A;  1XLY A;  3R6Y A;  3CZO A;  4ADL A;  4ADM A;  4CQ5 A;  1GK2 A;  1GK3 A;  2VD6 A;  1TJU A;  4NSL A;  3BHG A;  1C3C A;  5H8W A;  2PTR A;  2PFM A;  1W27 A;  2RJS A;  4V2Q A;  2RJR A;  3OCF A; 
#chains in the Genus database with same CATH homology
 4APA A;  4C5U A;  3TV2 A;  1TJV A;  2NYN A;  2HVG A;  4C5S A;  4FFX A;  1TJW A;  1TJ7 A;  3KDY A;  1EB4 A;  3GZH A;  2X75 A;  2O7F A;  4EEI A;  3R6V A;  1JSW A;  1XWO A;  1FUP A;  5F91 A;  2OHY A;  4C5R A;  1GKJ A;  2YII A;  5EYT A;  3UNV A;  3R6Q A;  1GKM A;  1DCN A;  2O7B A;  5HW2 A;  2NYF A;  2PTS A;  1I0A A;  3QBP A;  3RD8 A;  1AUW A;  4HGV A;  1FUR A;  1Q5N A;  1T6J A;  1DOF A;  3C8T A;  1U16 A;  2J91 A;  1C3U A;  1K62 A;  1KQ7 A;  4BAA A;  2O78 A;  2E9F A;  2QGA B;  1HY1 A;  1RE5 A;  3OCE A;  1VDK A;  3KDZ A;  1Y2M A;  1K7W A;  3NO9 A;  4MX2 A;  1U15 A;  2O6Y A;  4EFC A;  5D6B A;  1J3U A;  4NLE A;  3E04 A;  2O7D A;  1FUQ A;  4APB A;  4V2R A;  1YIS A;  2QVE A;  1YFM A;  1FUO A;  4BAB A;  3NZ4 A;  4C6G A;  5F92 A;  1HY0 A;  1YFE A;  1B8F A;  3GTD A;  1T6P A;  2O7E A;  2FUS A;  2PTQ A;  5EYV A;  3RRP A;  4FLC A;  3R6Y A;  3CZO A;  4ADL A;  4ADM A;  4CQ5 A;  1GK2 A;  1GK3 A;  2VD6 A;  1TJU A;  4NSL A;  3BHG A;  1C3C A;  2PTR A;  2PFM A;  1W27 A;  2RJS A;  4V2Q A;  2RJR A;  3OCF A; 
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