1GK2A

Histidine ammonia-lyase (hal) mutant f329g from pseudomonas putida
Total Genus 194
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
194
sequence length
509
structure length
509
Chain Sequence
TELTLKPGTLTLAQLRAIHAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTRIASHDLENLQRSLVLSHAAGIGAPLDDDLVRLIMVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGEGKARYKGQWLSATEALAVAGLEPLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLGSRSPFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHKNADKVQDPYSLRCQPQVMGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNGHAEPVAMAADNLALAIAEIGSLSERRISLMMDKHMSQLPPFLVENGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLRKGLKTSAKLEKARQALRSEVAHYDRDRFFAPDIEKAVELLAKGSLTGLLPAGVLPSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords HISTIDINE AMMONIA-LYASE
publication title Autocatalytic Peptide Cyclization During Chain Folding of Histidine Ammonia-Lyase.
pubmed doi rcsb
source organism Pseudomonas putida
total genus 194
structure length 509
sequence length 509
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.3: Histidine ammonia-lyase.
pdb deposition date 2001-08-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1gk2A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1gk2A02
1T6JA 4BABA 1DCNA 2X75A 2E9FA 1FUPA 1T6PA 5F92A 1GKJA 2O6YA 4C5RA 4EEIA 2O78A 3KDZA 1KQ7A 1JSWA 3NZ4A 4FFXA 3OCFA 2OHYA 1YFMA 1RE5A 4CQ5A 2QVEA 1EB4A 1K62A 2PTRA 2VD6A 2YIIA 1C3UA 3CZOA 5HW2A 1YISA 4NLEA 4C5UA 1FUOA 1W27A 1VDKA 3NO9A 2O7EA 3R6VA 5F91A 1U16A 4V2QA 4ADMA 1TJWA 1K7WA 1Q5NA 1YFEA 4NSLA 4APBA 4EFCA 3QBPA 2J91A 2QGAB 3KDYA 3UNVA 1GK2A 4V2RA 3RD8A 2PTSA 4APAA 1TJUA 3GZHA 3E04A 1I0AA 2NYFA 1XWOA 2O7DA 2RJRA 1HY0A 2O7BA 2PTQA 2FUSA 1J3UA 1AUWA 1C3CA 1DOFA 5D6BA 3OCEA 3BHGA 2PFMA 1FURA 4ADLA 3TV2A 1U15A 1HY1A 4BAAA 1B8FA 1GK3A 2RJSA 3R6YA 3RRPA 3GTDA 1GKMA 5EYVA 1Y2MA 5EYTA 4C6GA 3C8TA 3R6QA 4MX2A 4FLCA 1TJVA 4HGVA 1FUQA 2HVGA 2NYNA 4C5SA 2O7FA 1TJ7A
chains in the Genus database with same CATH superfamily
1T6JA 4BABA 4WNLA 1DCNA 2X75A 2E9FA 1FUPA 1T6PA 5F92A 1GKJA 1XL7A 2O6YA 4C5RA 4EEIA 2O78A 3KDZA 1KQ7A 1XMDA 1JSWA 3CRW1 3NZ4A 4FFXA 2VSFA 3OCFA 2OHYA 1YFMA 1RE5A 4CQ5A 2QVEA 4A15A 1EB4A 1K62A 2PTRA 5M0IA 2VD6A 2YIIA 1C3UA 3CZOA 5HW2A 2VL7A 1YISA 4NLEA 4C5UA 1FUOA 1W27A 1VDKA 3NO9A 2O7EA 3R6VA 3CRVA 5F91A 1U16A 4V2QA 4ADMA 2FELA 1TJWA 1K7WA 1Q5NA 1YFEA 4NSLA 4APBA 4EFCA 2FENA 3QBPA 2J91A 2QGAB 3KDYA 3UNVA 1GK2A 4V2RA 3RD8A 2PTSA 4APAA 1TJUA 3GZHA 3E04A 1I0AA 2NYFA 1XWOA 2O7DA 2RJRA 1HY0A 2O7BA 2PTQA 2FUSA 1J3UA 1AUWA 1C3CA 1DOFA 5M0JA 1XL8A 5D6BA 3OCEA 3BHGA 2PFMA 1FURA 4ADLA 3TV2A 1U15A 1HY1A 4BAAA 1B8FA 1GK3A 2RJSA 3R6YA 3RRPA 3GTDA 1GKMA 5EYVA 1Y2MA 5H8WA 5EYTA 4C6GA 3C8TA 3R6QA 4MX2A 4FLCA 1XLYA 1TJVA 4HGVA 1FUQA 2HVGA 2NYNA 4C5SA 2O7FA 1TJ7A 1XMCA
chains in the Genus database with same CATH topology
1T6JA 4BABA 1DCNA 2X75A 2E9FA 1FUPA 1T6PA 5F92A 1GKJA 2O6YA 4C5RA 4EEIA 2O78A 3KDZA 1KQ7A 1JSWA 3NZ4A 4FFXA 3OCFA 2OHYA 1YFMA 1RE5A 4CQ5A 2QVEA 1EB4A 1K62A 2PTRA 2VD6A 2YIIA 1C3UA 3CZOA 5HW2A 1YISA 4NLEA 4C5UA 1FUOA 1W27A 1VDKA 3NO9A 2O7EA 3R6VA 5F91A 1U16A 4V2QA 4ADMA 1TJWA 1K7WA 1Q5NA 1YFEA 4NSLA 4APBA 4EFCA 3QBPA 2J91A 2QGAB 3KDYA 3UNVA 1GK2A 4V2RA 3RD8A 2PTSA 4APAA 1TJUA 3GZHA 3E04A 1I0AA 2NYFA 1XWOA 2O7DA 2RJRA 1HY0A 2O7BA 2PTQA 2FUSA 1J3UA 1AUWA 1C3CA 1DOFA 5D6BA 3OCEA 3BHGA 2PFMA 1FURA 4ADLA 3TV2A 1U15A 1HY1A 4BAAA 1B8FA 1GK3A 2RJSA 3R6YA 3RRPA 3GTDA 1GKMA 5EYVA 1Y2MA 5EYTA 4C6GA 3C8TA 3R6QA 4MX2A 4FLCA 1TJVA 4HGVA 1FUQA 2HVGA 2NYNA 4C5SA 2O7FA 1TJ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T6J A;  4BAB A;  1DCN A;  2X75 A;  2E9F A;  1FUP A;  1T6P A;  5F92 A;  1GKJ A;  2O6Y A;  4C5R A;  4EEI A;  2O78 A;  3KDZ A;  1KQ7 A;  1JSW A;  3NZ4 A;  4FFX A;  3OCF A;  2OHY A;  1YFM A;  1RE5 A;  4CQ5 A;  2QVE A;  1EB4 A;  1K62 A;  2PTR A;  2VD6 A;  2YII A;  1C3U A;  3CZO A;  5HW2 A;  1YIS A;  4NLE A;  4C5U A;  1FUO A;  1W27 A;  1VDK A;  3NO9 A;  2O7E A;  3R6V A;  5F91 A;  1U16 A;  4V2Q A;  4ADM A;  1TJW A;  1K7W A;  1Q5N A;  1YFE A;  4NSL A;  4APB A;  4EFC A;  3QBP A;  2J91 A;  2QGA B;  3KDY A;  3UNV A;  1GK2 A;  4V2R A;  3RD8 A;  2PTS A;  4APA A;  1TJU A;  3GZH A;  3E04 A;  1I0A A;  2NYF A;  1XWO A;  2O7D A;  2RJR A;  1HY0 A;  2O7B A;  2PTQ A;  2FUS A;  1J3U A;  1AUW A;  1C3C A;  1DOF A;  5D6B A;  3OCE A;  3BHG A;  2PFM A;  1FUR A;  4ADL A;  3TV2 A;  1U15 A;  1HY1 A;  4BAA A;  1B8F A;  1GK3 A;  2RJS A;  3R6Y A;  3RRP A;  3GTD A;  1GKM A;  5EYV A;  1Y2M A;  5EYT A;  4C6G A;  3C8T A;  3R6Q A;  4MX2 A;  4FLC A;  1TJV A;  4HGV A;  1FUQ A;  2HVG A;  2NYN A;  4C5S A;  2O7F A;  1TJ7 A; 
#chains in the Genus database with same CATH topology
 1T6J A;  4BAB A;  4WNL A;  1DCN A;  2X75 A;  2E9F A;  1FUP A;  1T6P A;  5F92 A;  1GKJ A;  1XL7 A;  2O6Y A;  4C5R A;  4EEI A;  2O78 A;  3KDZ A;  1KQ7 A;  1XMD A;  1JSW A;  3CRW 1;  3NZ4 A;  4FFX A;  2VSF A;  3OCF A;  2OHY A;  1YFM A;  1RE5 A;  4CQ5 A;  2QVE A;  4A15 A;  1EB4 A;  1K62 A;  2PTR A;  5M0I A;  2VD6 A;  2YII A;  1C3U A;  3CZO A;  5HW2 A;  2VL7 A;  1YIS A;  4NLE A;  4C5U A;  1FUO A;  1W27 A;  1VDK A;  3NO9 A;  2O7E A;  3R6V A;  3CRV A;  5F91 A;  1U16 A;  4V2Q A;  4ADM A;  2FEL A;  1TJW A;  1K7W A;  1Q5N A;  1YFE A;  4NSL A;  4APB A;  4EFC A;  2FEN A;  3QBP A;  2J91 A;  2QGA B;  3KDY A;  3UNV A;  1GK2 A;  4V2R A;  3RD8 A;  2PTS A;  4APA A;  1TJU A;  3GZH A;  3E04 A;  1I0A A;  2NYF A;  1XWO A;  2O7D A;  2RJR A;  1HY0 A;  2O7B A;  2PTQ A;  2FUS A;  1J3U A;  1AUW A;  1C3C A;  1DOF A;  5M0J A;  1XL8 A;  5D6B A;  3OCE A;  3BHG A;  2PFM A;  1FUR A;  4ADL A;  3TV2 A;  1U15 A;  1HY1 A;  4BAA A;  1B8F A;  1GK3 A;  2RJS A;  3R6Y A;  3RRP A;  3GTD A;  1GKM A;  5EYV A;  1Y2M A;  5H8W A;  5EYT A;  4C6G A;  3C8T A;  3R6Q A;  4MX2 A;  4FLC A;  1XLY A;  1TJV A;  4HGV A;  1FUQ A;  2HVG A;  2NYN A;  4C5S A;  2O7F A;  1TJ7 A;  1XMC A; 
#chains in the Genus database with same CATH homology
 1T6J A;  4BAB A;  1DCN A;  2X75 A;  2E9F A;  1FUP A;  1T6P A;  5F92 A;  1GKJ A;  2O6Y A;  4C5R A;  4EEI A;  2O78 A;  3KDZ A;  1KQ7 A;  1JSW A;  3NZ4 A;  4FFX A;  3OCF A;  2OHY A;  1YFM A;  1RE5 A;  4CQ5 A;  2QVE A;  1EB4 A;  1K62 A;  2PTR A;  2VD6 A;  2YII A;  1C3U A;  3CZO A;  5HW2 A;  1YIS A;  4NLE A;  4C5U A;  1FUO A;  1W27 A;  1VDK A;  3NO9 A;  2O7E A;  3R6V A;  5F91 A;  1U16 A;  4V2Q A;  4ADM A;  1TJW A;  1K7W A;  1Q5N A;  1YFE A;  4NSL A;  4APB A;  4EFC A;  3QBP A;  2J91 A;  2QGA B;  3KDY A;  3UNV A;  1GK2 A;  4V2R A;  3RD8 A;  2PTS A;  4APA A;  1TJU A;  3GZH A;  3E04 A;  1I0A A;  2NYF A;  1XWO A;  2O7D A;  2RJR A;  1HY0 A;  2O7B A;  2PTQ A;  2FUS A;  1J3U A;  1AUW A;  1C3C A;  1DOF A;  5D6B A;  3OCE A;  3BHG A;  2PFM A;  1FUR A;  4ADL A;  3TV2 A;  1U15 A;  1HY1 A;  4BAA A;  1B8F A;  1GK3 A;  2RJS A;  3R6Y A;  3RRP A;  3GTD A;  1GKM A;  5EYV A;  1Y2M A;  5EYT A;  4C6G A;  3C8T A;  3R6Q A;  4MX2 A;  4FLC A;  1TJV A;  4HGV A;  1FUQ A;  2HVG A;  2NYN A;  4C5S A;  2O7F A;  1TJ7 A; 
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