1GK2A

Histidine ammonia-lyase (hal) mutant f329g from pseudomonas putida
Total Genus 194
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
194
sequence length
509
structure length
509
Chain Sequence
TELTLKPGTLTLAQLRAIHAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTRIASHDLENLQRSLVLSHAAGIGAPLDDDLVRLIMVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGEGKARYKGQWLSATEALAVAGLEPLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLGSRSPFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHKNADKVQDPYSLRCQPQVMGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNGHAEPVAMAADNLALAIAEIGSLSERRISLMMDKHMSQLPPFLVENGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLRKGLKTSAKLEKARQALRSEVAHYDRDRFFAPDIEKAVELLAKGSLTGLLPAGVLPSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Autocatalytic Peptide Cyclization During Chain Folding of Histidine Ammonia-Lyase.
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Lyase
molecule keywords HISTIDINE AMMONIA-LYASE
total genus 194
structure length 509
sequence length 509
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.3: Histidine ammonia-lyase.
pdb deposition date 2001-08-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1gk2A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1gk2A02
1K7WA 2O7FA 1YFEA 2O7BA 3QBPA 4BAAA 3KDYA 2QGAB 2RJSA 2PTSA 2NYNA 4APAA 4EEIA 1AUWA 4CQ5A 3R6YA 2PFMA 4APBA 3RD8A 1C3CA 5EYTA 4NLEA 1B8FA 1DOFA 1FUPA 1U15A 1YISA 2OHYA 2PTQA 3GTDA 1K62A 3OCEA 4HGVA 1XWOA 1Y2MA 4ADLA 2E9FA 4ADMA 4EFCA 2O7EA 1GKJA 4BABA 3RRPA 2X75A 2O78A 2RJRA 1T6PA 4NSLA 1VDKA 1GKMA 3CZOA 5EYVA 3TV2A 1KQ7A 1U16A 1T6JA 3C8TA 2VD6A 4V2QA 5D6BA 2J91A 3NZ4A 1JSWA 3GZHA 3R6QA 1EB4A 2FUSA 4C5RA 2QVEA 2NYFA 1Q5NA 2PTRA 5HW2A 2O7DA 1YFMA 1GK3A 1RE5A 1TJVA 1W27A 1HY0A 1TJWA 3E04A 3NO9A 4C5UA 1FUOA 4V2RA 5F92A 1FUQA 1I0AA 1GK2A 4FFXA 4C5SA 1FURA 3KDZA 1DCNA 2HVGA 1TJ7A 4MX2A 1C3UA 3OCFA 1HY1A 5F91A 1J3UA 3BHGA 4FLCA 2O6YA 3R6VA 4C6GA 2YIIA 1TJUA 3UNVA
chains in the Genus database with same CATH superfamily
1K7WA 2O7FA 1YFEA 2O7BA 3QBPA 2VSFA 4BAAA 3KDYA 2QGAB 2RJSA 2PTSA 2NYNA 4APAA 4EEIA 1AUWA 4A15A 4CQ5A 3R6YA 5M0JA 2PFMA 4APBA 3RD8A 1C3CA 5EYTA 1XMCA 4NLEA 1XMDA 1B8FA 1DOFA 1FUPA 1U15A 1YISA 2OHYA 2PTQA 3GTDA 1K62A 3OCEA 4HGVA 1XWOA 2FELA 1Y2MA 4ADLA 2E9FA 4ADMA 4EFCA 2O7EA 4WNLA 1GKJA 4BABA 3RRPA 2X75A 2O78A 2RJRA 1T6PA 2VL7A 4NSLA 1VDKA 1GKMA 3CZOA 5EYVA 3TV2A 1KQ7A 1U16A 1T6JA 3C8TA 2VD6A 4V2QA 5D6BA 2J91A 3NZ4A 1JSWA 3GZHA 3R6QA 1EB4A 2FUSA 4C5RA 2QVEA 2NYFA 1Q5NA 2PTRA 5HW2A 2O7DA 1YFMA 1GK3A 1RE5A 2FENA 1TJVA 5H8WA 1W27A 1HY0A 1XL8A 1TJWA 3E04A 3NO9A 5M0IA 1XL7A 4C5UA 1FUOA 4V2RA 5F92A 1FUQA 1I0AA 1GK2A 4FFXA 4C5SA 1FURA 3KDZA 1DCNA 2HVGA 3CRVA 3CRW1 1TJ7A 4MX2A 1C3UA 1XLYA 3OCFA 1HY1A 5F91A 1J3UA 3BHGA 4FLCA 2O6YA 3R6VA 4C6GA 2YIIA 1TJUA 3UNVA
chains in the Genus database with same CATH topology
1K7WA 2O7FA 1YFEA 2O7BA 3QBPA 4BAAA 3KDYA 2QGAB 2RJSA 2PTSA 2NYNA 4APAA 4EEIA 1AUWA 4CQ5A 3R6YA 2PFMA 4APBA 3RD8A 1C3CA 5EYTA 4NLEA 1B8FA 1DOFA 1FUPA 1U15A 1YISA 2OHYA 2PTQA 3GTDA 1K62A 3OCEA 4HGVA 1XWOA 1Y2MA 4ADLA 2E9FA 4ADMA 4EFCA 2O7EA 1GKJA 4BABA 3RRPA 2X75A 2O78A 2RJRA 1T6PA 4NSLA 1VDKA 1GKMA 3CZOA 5EYVA 3TV2A 1KQ7A 1U16A 1T6JA 3C8TA 2VD6A 4V2QA 5D6BA 2J91A 3NZ4A 1JSWA 3GZHA 3R6QA 1EB4A 2FUSA 4C5RA 2QVEA 2NYFA 1Q5NA 2PTRA 5HW2A 2O7DA 1YFMA 1GK3A 1RE5A 1TJVA 1W27A 1HY0A 1TJWA 3E04A 3NO9A 4C5UA 1FUOA 4V2RA 5F92A 1FUQA 1I0AA 1GK2A 4FFXA 4C5SA 1FURA 3KDZA 1DCNA 2HVGA 1TJ7A 4MX2A 1C3UA 3OCFA 1HY1A 5F91A 1J3UA 3BHGA 4FLCA 2O6YA 3R6VA 4C6GA 2YIIA 1TJUA 3UNVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K7W A;  2O7F A;  1YFE A;  2O7B A;  3QBP A;  4BAA A;  3KDY A;  2QGA B;  2RJS A;  2PTS A;  2NYN A;  4APA A;  4EEI A;  1AUW A;  4CQ5 A;  3R6Y A;  2PFM A;  4APB A;  3RD8 A;  1C3C A;  5EYT A;  4NLE A;  1B8F A;  1DOF A;  1FUP A;  1U15 A;  1YIS A;  2OHY A;  2PTQ A;  3GTD A;  1K62 A;  3OCE A;  4HGV A;  1XWO A;  1Y2M A;  4ADL A;  2E9F A;  4ADM A;  4EFC A;  2O7E A;  1GKJ A;  4BAB A;  3RRP A;  2X75 A;  2O78 A;  2RJR A;  1T6P A;  4NSL A;  1VDK A;  1GKM A;  3CZO A;  5EYV A;  3TV2 A;  1KQ7 A;  1U16 A;  1T6J A;  3C8T A;  2VD6 A;  4V2Q A;  5D6B A;  2J91 A;  3NZ4 A;  1JSW A;  3GZH A;  3R6Q A;  1EB4 A;  2FUS A;  4C5R A;  2QVE A;  2NYF A;  1Q5N A;  2PTR A;  5HW2 A;  2O7D A;  1YFM A;  1GK3 A;  1RE5 A;  1TJV A;  1W27 A;  1HY0 A;  1TJW A;  3E04 A;  3NO9 A;  4C5U A;  1FUO A;  4V2R A;  5F92 A;  1FUQ A;  1I0A A;  1GK2 A;  4FFX A;  4C5S A;  1FUR A;  3KDZ A;  1DCN A;  2HVG A;  1TJ7 A;  4MX2 A;  1C3U A;  3OCF A;  1HY1 A;  5F91 A;  1J3U A;  3BHG A;  4FLC A;  2O6Y A;  3R6V A;  4C6G A;  2YII A;  1TJU A;  3UNV A; 
#chains in the Genus database with same CATH topology
 1K7W A;  2O7F A;  1YFE A;  2O7B A;  3QBP A;  2VSF A;  4BAA A;  3KDY A;  2QGA B;  2RJS A;  2PTS A;  2NYN A;  4APA A;  4EEI A;  1AUW A;  4A15 A;  4CQ5 A;  3R6Y A;  5M0J A;  2PFM A;  4APB A;  3RD8 A;  1C3C A;  5EYT A;  1XMC A;  4NLE A;  1XMD A;  1B8F A;  1DOF A;  1FUP A;  1U15 A;  1YIS A;  2OHY A;  2PTQ A;  3GTD A;  1K62 A;  3OCE A;  4HGV A;  1XWO A;  2FEL A;  1Y2M A;  4ADL A;  2E9F A;  4ADM A;  4EFC A;  2O7E A;  4WNL A;  1GKJ A;  4BAB A;  3RRP A;  2X75 A;  2O78 A;  2RJR A;  1T6P A;  2VL7 A;  4NSL A;  1VDK A;  1GKM A;  3CZO A;  5EYV A;  3TV2 A;  1KQ7 A;  1U16 A;  1T6J A;  3C8T A;  2VD6 A;  4V2Q A;  5D6B A;  2J91 A;  3NZ4 A;  1JSW A;  3GZH A;  3R6Q A;  1EB4 A;  2FUS A;  4C5R A;  2QVE A;  2NYF A;  1Q5N A;  2PTR A;  5HW2 A;  2O7D A;  1YFM A;  1GK3 A;  1RE5 A;  2FEN A;  1TJV A;  5H8W A;  1W27 A;  1HY0 A;  1XL8 A;  1TJW A;  3E04 A;  3NO9 A;  5M0I A;  1XL7 A;  4C5U A;  1FUO A;  4V2R A;  5F92 A;  1FUQ A;  1I0A A;  1GK2 A;  4FFX A;  4C5S A;  1FUR A;  3KDZ A;  1DCN A;  2HVG A;  3CRV A;  3CRW 1;  1TJ7 A;  4MX2 A;  1C3U A;  1XLY A;  3OCF A;  1HY1 A;  5F91 A;  1J3U A;  3BHG A;  4FLC A;  2O6Y A;  3R6V A;  4C6G A;  2YII A;  1TJU A;  3UNV A; 
#chains in the Genus database with same CATH homology
 1K7W A;  2O7F A;  1YFE A;  2O7B A;  3QBP A;  4BAA A;  3KDY A;  2QGA B;  2RJS A;  2PTS A;  2NYN A;  4APA A;  4EEI A;  1AUW A;  4CQ5 A;  3R6Y A;  2PFM A;  4APB A;  3RD8 A;  1C3C A;  5EYT A;  4NLE A;  1B8F A;  1DOF A;  1FUP A;  1U15 A;  1YIS A;  2OHY A;  2PTQ A;  3GTD A;  1K62 A;  3OCE A;  4HGV A;  1XWO A;  1Y2M A;  4ADL A;  2E9F A;  4ADM A;  4EFC A;  2O7E A;  1GKJ A;  4BAB A;  3RRP A;  2X75 A;  2O78 A;  2RJR A;  1T6P A;  4NSL A;  1VDK A;  1GKM A;  3CZO A;  5EYV A;  3TV2 A;  1KQ7 A;  1U16 A;  1T6J A;  3C8T A;  2VD6 A;  4V2Q A;  5D6B A;  2J91 A;  3NZ4 A;  1JSW A;  3GZH A;  3R6Q A;  1EB4 A;  2FUS A;  4C5R A;  2QVE A;  2NYF A;  1Q5N A;  2PTR A;  5HW2 A;  2O7D A;  1YFM A;  1GK3 A;  1RE5 A;  1TJV A;  1W27 A;  1HY0 A;  1TJW A;  3E04 A;  3NO9 A;  4C5U A;  1FUO A;  4V2R A;  5F92 A;  1FUQ A;  1I0A A;  1GK2 A;  4FFX A;  4C5S A;  1FUR A;  3KDZ A;  1DCN A;  2HVG A;  1TJ7 A;  4MX2 A;  1C3U A;  3OCF A;  1HY1 A;  5F91 A;  1J3U A;  3BHG A;  4FLC A;  2O6Y A;  3R6V A;  4C6G A;  2YII A;  1TJU A;  3UNV A; 
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