2FEL | Genus

Total Genus 126

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	126
sequence length	349
structure length	337
Chain Sequence	SLSPFEHPFLSGLFGDSEIIELFSAKADIDAMIRFETALAQAEAEASIFADDEAEAIVSGLSEFAADMSALRHGVAKDGVVVPELIRQMRAAVAGQAADKVHFGATSQDVIDTSLMLRLKMAAEIIATRLGHLIDTLGDLASRDGHKPLTGYTRMQAAIGITVADRAAGWIAPLERHLLRLETFAQNGFALQFGGAAGTLEKLGDNAGAVRADLAKRLGLADRPQWHNQRDGIAEFANLLSLVTGTLGKFGQDIALMAEIGSEIRLSNPVNAETLVTLARFNAVQISALHQSLVQEQERSGAGWMLEWLTLPQMVTATGTSLLVAERLAAQIDRLGA

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Isomerase
source organism	Agrobacterium tumefaciens
publication title	Structure and function of the 3-carboxy-cis,cis-muconate lactonizing enzyme from the protocatechuate degradative pathway of Agrobacterium radiobacter S2. pubmed doi rcsb
molecule keywords	3-carboxy-cis,cis-muconate lactonizing enzyme
total genus	126
structure length	337
sequence length	349
chains with identical sequence	B, C, D, E, F, G, H, I, J, K, L
ec nomenclature
pdb deposition date	2005-12-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00206	Lyase_1	Lyase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.200.30	Mainly Alpha	Up-down Bundle	Fumarase C; Chain A, domain 2	Fumarase C; Chain A, domain 2	2felA00

2FENA 2FELA
chains in the Genus database with same CATH superfamily

1K62A 3NO9A 4FLCA 2O7EA 5M0JA 5F92A 3R6YA 2RJRA 1KQ7A 4V2RA 2OHYA 1GKJA 1EB4A 3BHGA 1W27A 2NYNA 3OCEA 1Y2MA 1HY0A 1GK2A 3R6VA 1DOFA 3KDYA 3NZ4A 2J91A 3KDZA 5F91A 4CQ5A 3UNVA 4C5SA 1XWOA 2O6YA 3C8TA 4APBA 3RRPA 4HGVA 2VD6A 1FUQA 1T6JA 1U15A 3GTDA 1K7WA 3CZOA 1JSWA 5EYVA 1TJWA 2QVEA 3TV2A 1YISA 2HVGA 4C6GA 4NSLA 5EYTA 1Q5NA 5HW2A 1XLYA 2O78A 1TJVA 4MX2A 4FFXA 4WNLA 4C5RA 2PFMA 4NLEA 2O7BA 1RE5A 2QGAB 2FELA 1YFMA 2FUSA 2O7FA 3QBPA 2X75A 2O7DA 3GZHA 1AUWA 2RJSA 4C5UA 4EEIA 1VDKA 3E04A 2NYFA 3R6QA 1DCNA 1FURA 1T6PA 4EFCA 1YFEA 2PTQA 5M0IA 1TJUA 2YIIA 2PTRA 1I0AA 1C3CA 1TJ7A 1B8FA 2FENA 3OCFA 3RD8A 5D6BA 4APAA 1FUOA 1FUPA 1HY1A 1U16A 4BABA 4ADLA 1GK3A 4V2QA 4ADMA 1J3UA 2PTSA 1C3UA 2E9FA 1GKMA 4BAAA
chains in the Genus database with same CATH topology

2FENA 2FELA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2FEN A;  2FEL A; 
#chains in the Genus database with same CATH topology
 1K62 A;  3NO9 A;  4FLC A;  2O7E A;  5M0J A;  5F92 A;  3R6Y A;  2RJR A;  1KQ7 A;  4V2R A;  2OHY A;  1GKJ A;  1EB4 A;  3BHG A;  1W27 A;  2NYN A;  3OCE A;  1Y2M A;  1HY0 A;  1GK2 A;  3R6V A;  1DOF A;  3KDY A;  3NZ4 A;  2J91 A;  3KDZ A;  5F91 A;  4CQ5 A;  3UNV A;  4C5S A;  1XWO A;  2O6Y A;  3C8T A;  4APB A;  3RRP A;  4HGV A;  2VD6 A;  1FUQ A;  1T6J A;  1U15 A;  3GTD A;  1K7W A;  3CZO A;  1JSW A;  5EYV A;  1TJW A;  2QVE A;  3TV2 A;  1YIS A;  2HVG A;  4C6G A;  4NSL A;  5EYT A;  1Q5N A;  5HW2 A;  1XLY A;  2O78 A;  1TJV A;  4MX2 A;  4FFX A;  4WNL A;  4C5R A;  2PFM A;  4NLE A;  2O7B A;  1RE5 A;  2QGA B;  2FEL A;  1YFM A;  2FUS A;  2O7F A;  3QBP A;  2X75 A;  2O7D A;  3GZH A;  1AUW A;  2RJS A;  4C5U A;  4EEI A;  1VDK A;  3E04 A;  2NYF A;  3R6Q A;  1DCN A;  1FUR A;  1T6P A;  4EFC A;  1YFE A;  2PTQ A;  5M0I A;  1TJU A;  2YII A;  2PTR A;  1I0A A;  1C3C A;  1TJ7 A;  1B8F A;  2FEN A;  3OCF A;  3RD8 A;  5D6B A;  4APA A;  1FUO A;  1FUP A;  1HY1 A;  1U16 A;  4BAB A;  4ADL A;  1GK3 A;  4V2Q A;  4ADM A;  1J3U A;  2PTS A;  1C3U A;  2E9F A;  1GKM A;  4BAA A; 
#chains in the Genus database with same CATH homology
 2FEN A;  2FEL A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2FELA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations