4WNL | Genus

Total Genus 89

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	89
sequence length	233
structure length	227
Chain Sequence	DIKVTPGTSELVEQILALLSRYLSSYIHVLNKFISHLRRVATLRFERTTLIKFVKKLRFYNDSVLSYNASEFINEPGADSFDKVILPIASMFVKCVETFDLLNYYLTQSLQKEILSKTLNEDLTLTAESILAIDDTYNHFVKFSQWMIESLRIGSNLLDLEVVQFAIKSADEDGTNIGETDNIFLQEILPVNSEEEFQTLSAAWHSILDGKLGALDEEFDVVATKWH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 227 atoms

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227 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Rna binding protein
source organism	Saccharomyces cerevisiae
publication title	Hooking She3p onto She2p for myosin-mediated cytoplasmic mRNA transport. pubmed doi rcsb
molecule keywords	SWI5-dependent HO expression protein 2
total genus	89
structure length	227
sequence length	233
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2014-10-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF11435	She2p	RNA binding protein She2p

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.200.20	Mainly Alpha	Up-down Bundle	Fumarase C; Chain A, domain 2	She2 domain	4wnlA00

1XLYA 5M0JA 4WNLA 5M0IA
chains in the Genus database with same CATH superfamily

2O7DA 5HW2A 3C8TA 2FENA 2O6YA 1I0AA 4ADLA 1C3CA 3UNVA 4BABA 1GK3A 5D6BA 1J3UA 4C5SA 1U16A 5M0JA 1Q5NA 1GK2A 5F91A 1YFEA 3NO9A 2FELA 1HY0A 1K7WA 2O7BA 3TV2A 2O7EA 1HY1A 4BAAA 2VD6A 1FUQA 3RD8A 2O78A 4V2RA 1FUOA 3OCFA 1TJWA 4NLEA 2OHYA 2PTRA 4V2QA 5EYVA 2PFMA 2HVGA 2NYFA 3GTDA 3R6QA 1T6PA 1B8FA 1TJ7A 1YFMA 1YISA 4FLCA 3BHGA 5M0IA 1FUPA 1JSWA 3KDYA 3R6VA 4ADMA 4EEIA 5F92A 2RJRA 1XWOA 4C5RA 2YIIA 4WNLA 4FFXA 4MX2A 1GKMA 4EFCA 4C6GA 3E04A 1TJUA 3R6YA 1VDKA 1GKJA 1Y2MA 3NZ4A 1FURA 2PTQA 3OCEA 1K62A 4NSLA 1RE5A 1TJVA 3RRPA 3QBPA 2FUSA 2PTSA 4CQ5A 1DCNA 4HGVA 1XLYA 1W27A 5EYTA 2E9FA 1AUWA 2NYNA 2QGAB 2J91A 1KQ7A 1U15A 1C3UA 3GZHA 2O7FA 4APAA 3CZOA 1T6JA 1DOFA 1EB4A 3KDZA 2RJSA 2QVEA 4APBA 4C5UA 2X75A
chains in the Genus database with same CATH topology

1XLYA 5M0JA 4WNLA 5M0IA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1XLY A;  5M0J A;  4WNL A;  5M0I A; 
#chains in the Genus database with same CATH topology
 2O7D A;  5HW2 A;  3C8T A;  2FEN A;  2O6Y A;  1I0A A;  4ADL A;  1C3C A;  3UNV A;  4BAB A;  1GK3 A;  5D6B A;  1J3U A;  4C5S A;  1U16 A;  5M0J A;  1Q5N A;  1GK2 A;  5F91 A;  1YFE A;  3NO9 A;  2FEL A;  1HY0 A;  1K7W A;  2O7B A;  3TV2 A;  2O7E A;  1HY1 A;  4BAA A;  2VD6 A;  1FUQ A;  3RD8 A;  2O78 A;  4V2R A;  1FUO A;  3OCF A;  1TJW A;  4NLE A;  2OHY A;  2PTR A;  4V2Q A;  5EYV A;  2PFM A;  2HVG A;  2NYF A;  3GTD A;  3R6Q A;  1T6P A;  1B8F A;  1TJ7 A;  1YFM A;  1YIS A;  4FLC A;  3BHG A;  5M0I A;  1FUP A;  1JSW A;  3KDY A;  3R6V A;  4ADM A;  4EEI A;  5F92 A;  2RJR A;  1XWO A;  4C5R A;  2YII A;  4WNL A;  4FFX A;  4MX2 A;  1GKM A;  4EFC A;  4C6G A;  3E04 A;  1TJU A;  3R6Y A;  1VDK A;  1GKJ A;  1Y2M A;  3NZ4 A;  1FUR A;  2PTQ A;  3OCE A;  1K62 A;  4NSL A;  1RE5 A;  1TJV A;  3RRP A;  3QBP A;  2FUS A;  2PTS A;  4CQ5 A;  1DCN A;  4HGV A;  1XLY A;  1W27 A;  5EYT A;  2E9F A;  1AUW A;  2NYN A;  2QGA B;  2J91 A;  1KQ7 A;  1U15 A;  1C3U A;  3GZH A;  2O7F A;  4APA A;  3CZO A;  1T6J A;  1DOF A;  1EB4 A;  3KDZ A;  2RJS A;  2QVE A;  4APB A;  4C5U A;  2X75 A; 
#chains in the Genus database with same CATH homology
 1XLY A;  5M0J A;  4WNL A;  5M0I A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4WNLA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations