1KKEA

Crystal structure of reovirus attachment protein sigma1 trimer
Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
206
structure length
206
Chain Sequence
EQSYVASAVTPLRLNSSTKVLDMLIDSSTLEINSSGQLTVRSTSPNLRYPIADVSGGIGMSPNYRFRQSMWIGIVSYSGSGLNWRVQVNSDIFIVDDYIHICLPAFDGFSIADGGDLSLNFVTGLLPPLLTGDTEPAFHNDVVTYGAQTVAIGLSSGGAPQYMSKNLWVEQWQDGVLRLRVEGGGSITHSNSKWPAMTVSYPRSFT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of reovirus attachment protein sigma1 reveals evolutionary relationship to adenovirus fiber.
pubmed doi rcsb
molecule keywords SIGMA 1 PROTEIN
molecule tags Viral protein
source organism Mammalian orthoreovirus 3
total genus 35
structure length 206
sequence length 206
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2001-12-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.25.20 Mainly Beta Ribbon Laminin reovirus attachment protein sigma1; domain 1 1kkeA01
2.60.90.20 Mainly Beta Sandwich Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) Virus attachment protein , globular domain 1kkeA02
5MHSA 2JJLA 2VRSA 4ODBA 1QIUA 2OJ5A 3EOYA 4XC5A 1V1HA 2OJ6A 2BSFA 1V1IA 2BT8A 2BT7A 3S6XA 1KKEA 4GU3A 4GU4A
chains in the Genus database with same CATH superfamily
1NQLB 1DQBA 1UXAA 2WBWA 1EZQB 2BZUA 2Y7ZB 5JBAE 3TZIA 4BDWA 2F9BL 2WFXB 3L89A 3L88A 3ZYGA 2Y7XB 5L30L 1K36A 3MQEA 2WPJE 5EGMB 2QLKA 1M1XB 4O02B 3LTFB 2BOKL 2RHPA 2W86A 4TGFA 2XC0L 1PFXL 4JZDL 2J1KC 2EI7B 4D0FA 1LPGA 1XDTR 3CFWA 3EXWA 4XQAA 4NA9L 2J12A 1CVUA 1IQGL 2FLBL 2VVUL 2XC5L 3HS7A 3M37L 6COXA 1LQDA 2VH6B 4C16A 1A3PA 4D90A 1NFXB 3KCGL 1V3XB 4JZEL 5KN5C 1P9JA 3IITB 3TK6B 2H9EC 1CCFA 1DX5I 1HRFA 3IJEB 3TGFA 1KIGL 2BT8A 1G1QA 2Y5GL 3LC5B 1YUFA 1XKAL 3LC3B 4ISIL 1WHFA 4XL1A 1WU1B 1APOA 1H7ZA 3HPTA 4AQTA 3SOBB 1F7MA 4ZHAB 1EMOA 1NOBA 3QCWA 3N8XA 4M10A 2WG3C 1HJ7A 1P0SL 5IKRA 3OLUA 1TLEA 3LTGD 1HT8A 1ZAQA 3TK5B 1LMJA 1HAEA 2HORA 2D1JB 1MOXC 2XBWL 4OTJA 5JBBE 1PGEA 1XFEA 4COXA 4ISHL 2BQ7A 1EPJA 1CQEA 2VTWA 5I46L 5F19A 4BTTA 1UZQA 2NPRA 4LORA 1NFYB 2MGPA 2FZZL 3LN1A 2Y5HL 4RRXA 2WBVA 4Z0LA 1UZPA 2ADXA 3EGFA 3POYA 1B9WA 2IUNA 1HX2A 2WPHE 3DEMA 2P16L 3EOYA 2XBVL 4GU3A 2O39A 3CNCA 1Q4GA 2WPLE 2Y81B 4ATZA 2VVVL 1ATDA 1NPEB 4FM5A 3N0IA 1G2LB 3ENSA 1LPKA 1QHVA 2RA0L 1JV2B 1PXXA 1IJQA 4MMXB 1BF9A 2W26B 4MMYB 1EGFA 3GCWE 3U73A 1HREA 2VWMK 2EI6B 1UXEA 3ASIA 3EXVA 2BQ6A 4CUFA 4BXSA 2CJIB 4O1ZA 2J94B 2P93L 1APQA 4X8SL 1UZKA 1IQIL 1PTHA 4ZH8B 1N7DA 1ADXA 2OJ6A 2I9AA 1C5MF 5JW1A 2BZ6L 2PR3B 2OJ5A 3N8WB 3ZYIB 2RNLA 1G1RA 2J2UB 3SOVA 1G1TA 3GCXE 2Y5FL 2K2SB 2P28B 1TPGA 2P3UA 2W3KB 1IGXA 4JZFL 5CKQA 2JKHL 2EI8B 4CUDA 1KNBA 3HO5A 4BTIA 1HZ8A 2BO2A 1KKEA 5JBCE 4GU4A 1EPGA 3GISX 2Y82B 1RFNB 3SW2A 1OB1C 3LN0A 1X7AL 4E1GA 2I9BA 1KSNB 4JYUL 1G1SA 2OYEP 1EBVA 4K6WA 1ATAA 2WGTA 2Y38A 2TGFA 2WYJB 4Y79B 3BQ4A 3N8WA 1V1HA 5COXA 2B7DL 3QMOA 2WPKE 2G00L 2KL7A 2VRSA 3O8EA 4D63A 2KB9A 2W2OE 1P69A 2P3FN 3H5CB 4Z6AL 1FE2A 5JB8E 2BOUA 1IQFL 2BOXA 1IP0A 4G1MB 1ATEA 2W2NE 2BOHA 4XQBA 4A94C 4M11A 5JVYA 3FBYA 1IQML 1F0RB 2XBXL 5KIRA 1IQLL 3F6UL 3LAQA 3N8ZA 3SOQA 1COUA 1GK5A 3V65B 1UZJA 4ZXXL 3HS5A 4YT7L 2W3IB 2WSTA 1YUGA 2H9EL 1KLIL 4Z0KB 2HOXA 1NZIA 4XLWA 1KLJL 5L2YL 2UWLB 1FSBA 2VWOL 1W7XL 2W2ME 1I0UA 1EAIC 2AYLA 1FF7A 4RRZA 2J2JA 4RRYA 1YO8A 5IKQA 3N8YB 1QIUA 1J9CL 4OTYA 1CVWL 3S6XA 1IQJL 5F1AA 3BPSE 3FFGL 3HO4A 1DDXA 1FFMA 1LPZA 1WHEA 1IQEL 3CS7L 3F0YA 3Q3KB 3RR3A 4Y6DB 5JB9E 4NG9L 3KQEL 4K6TA 2XBYL 3KK6A 3PGHA 2J38B 1CX2A 5K0HB 5IKTA 2VWLL 5CISA 2YGPA 3TH3L 2OYUP 1L3YA 2K2TA 5MHSA 1FJSL 1KACA 1NT0A 2FLGA 4RUTA 1TOZA 1HAFA 5FDQA 2WZPP 4K6UA 3F1SB 2GD4A 5CKNA 2MGRA 1IOEL 3KQDL 1MQ5L 3N8YA 2WGUA 3BT1A 2WYGB 4NGAL 1LMMA 2WFTA 2FLRL 1L5GB 4CUEA 4X8UL 1EQHA 2W2PE 2BT7A 2XC4L 3KQCL 2P26A 3C9AC 1O5DL 1P6AA 4Y71B 3NJPC 1EPHA 3KRKA 3LIWB 2W2QE 5IKVA 3QH0A 4XL8A 3NTBA 2BMGA 1V1IA 2BZVA 2UWOB 5E8DA 3N8VA 3HS6A 1G2MB 1SZBA 4WYJA 1FAXL 2VH0B 1JBUL 1U67A 4YZUB 1NFUB 2UWPB 1Z6CA 2MHPA 2P3FL 4D62A 3CA7A 2PHBB 1ATBA 2P3TA 1CCVA 3KQBL 3M36L 3FCSB 1EMNA 1Z6EL 1YGCL 3HO3A 4CW8A 1EPIA 2IUMA 4ODBA 4XC5A 2BQWA 1IOXA 1HCGB 4A7IA 1DVAL 1HT5A 4ZXYL 2W9LC 4Y7BB 2VJ3A 1XKBA 4PH9A 2BSFA 4YT6L 3OLTA 1N1IA 4ZDGA 1IVOC 5JVZA 2J95B 3TBDA 4D0EA 3K9XA 4LMFA 5L2ZL 3P5BL 1YUKB 2VVCK 3ZPEA 3U7UG 3ZPFA 4RS0A 2KV4A 1U8CB 2VWNL 1QFKL 2WG4B 1LK9A 1K37A 2YGOA 1URKA 4ZAEB 4Y76B 2M74A 4Y7AB 4MMZB 1IGZA 1IQKL 3CENL 1NFWB 1EQGA 1F0SB 1W8BL 3ZYJB 4X8VL 1IQNL 1IQHL 3KL6B 1F7EA 4LIYA 2FD6A 3Q7DA 4X8TL 2DDUA 1FAKL 4CSYA 1DIYA 1UXBA 4K6VA 2JJLA 2PUQL 2P95L 3V64C 2KNIA 2P94L 3NTGA 4XBMA 1KLOA 3QNDA 1CEJA 5CKMA 3NT1A 4BXWA 1PRHA 2J34B 2J4IB 4BTUA 2WPME 2Q1JB 4RRWA 3ELAL 3BT2A 1AUTL 2YGQA 3R05A 4BDXA 4JYVL 1MQ6L 3MDLA 2Y80B 2WPIE 1JL9A
chains in the Genus database with same CATH topology
5MHSA 2JJLA 2VRSA 4ODBA 1QIUA 2OJ5A 3EOYA 4XC5A 1V1HA 2OJ6A 2BSFA 1V1IA 2BT8A 2BT7A 3S6XA 1KKEA 4GU3A 4GU4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5MHS A;  2JJL A;  2VRS A;  4ODB A;  1QIU A;  2OJ5 A;  3EOY A;  4XC5 A;  1V1H A;  2OJ6 A;  2BSF A;  1V1I A;  2BT8 A;  2BT7 A;  3S6X A;  1KKE A;  4GU3 A;  4GU4 A; 
#chains in the Genus database with same CATH topology
 1NQL B;  1DQB A;  1UXA A;  2WBW A;  1EZQ B;  2BZU A;  2Y7Z B;  5JBA E;  3TZI A;  4BDW A;  2F9B L;  2WFX B;  3L89 A;  3L88 A;  3ZYG A;  2Y7X B;  5L30 L;  1K36 A;  3MQE A;  2WPJ E;  5EGM B;  2QLK A;  1M1X B;  4O02 B;  3LTF B;  2BOK L;  2RHP A;  2W86 A;  4TGF A;  2XC0 L;  1PFX L;  4JZD L;  2J1K C;  2EI7 B;  4D0F A;  1LPG A;  1XDT R;  3CFW A;  3EXW A;  4XQA A;  4NA9 L;  2J12 A;  1CVU A;  1IQG L;  2FLB L;  2VVU L;  2XC5 L;  3HS7 A;  3M37 L;  6COX A;  1LQD A;  2VH6 B;  4C16 A;  1A3P A;  4D90 A;  1NFX B;  3KCG L;  1V3X B;  4JZE L;  5KN5 C;  1P9J A;  3IIT B;  3TK6 B;  2H9E C;  1CCF A;  1DX5 I;  1HRF A;  3IJE B;  3TGF A;  1KIG L;  2BT8 A;  1G1Q A;  2Y5G L;  3LC5 B;  1YUF A;  1XKA L;  3LC3 B;  4ISI L;  1WHF A;  4XL1 A;  1WU1 B;  1APO A;  1H7Z A;  3HPT A;  4AQT A;  3SOB B;  1F7M A;  4ZHA B;  1EMO A;  1NOB A;  3QCW A;  3N8X A;  4M10 A;  2WG3 C;  1HJ7 A;  1P0S L;  5IKR A;  3OLU A;  1TLE A;  3LTG D;  1HT8 A;  1ZAQ A;  3TK5 B;  1LMJ A;  1HAE A;  2HOR A;  2D1J B;  1MOX C;  2XBW L;  4OTJ A;  5JBB E;  1PGE A;  1XFE A;  4COX A;  4ISH L;  2BQ7 A;  1EPJ A;  1CQE A;  2VTW A;  5I46 L;  5F19 A;  4BTT A;  1UZQ A;  2NPR A;  4LOR A;  1NFY B;  2MGP A;  2FZZ L;  3LN1 A;  2Y5H L;  4RRX A;  2WBV A;  4Z0L A;  1UZP A;  2ADX A;  3EGF A;  3POY A;  1B9W A;  2IUN A;  1HX2 A;  2WPH E;  3DEM A;  2P16 L;  3EOY A;  2XBV L;  4GU3 A;  2O39 A;  3CNC A;  1Q4G A;  2WPL E;  2Y81 B;  4ATZ A;  2VVV L;  1ATD A;  1NPE B;  4FM5 A;  3N0I A;  1G2L B;  3ENS A;  1LPK A;  1QHV A;  2RA0 L;  1JV2 B;  1PXX A;  1IJQ A;  4MMX B;  1BF9 A;  2W26 B;  4MMY B;  1EGF A;  3GCW E;  3U73 A;  1HRE A;  2VWM K;  2EI6 B;  1UXE A;  3ASI A;  3EXV A;  2BQ6 A;  4CUF A;  4BXS A;  2CJI B;  4O1Z A;  2J94 B;  2P93 L;  1APQ A;  4X8S L;  1UZK A;  1IQI L;  1PTH A;  4ZH8 B;  1N7D A;  1ADX A;  2OJ6 A;  2I9A A;  1C5M F;  5JW1 A;  2BZ6 L;  2PR3 B;  2OJ5 A;  3N8W B;  3ZYI B;  2RNL A;  1G1R A;  2J2U B;  3SOV A;  1G1T A;  3GCX E;  2Y5F L;  2K2S B;  2P28 B;  1TPG A;  2P3U A;  2W3K B;  1IGX A;  4JZF L;  5CKQ A;  2JKH L;  2EI8 B;  4CUD A;  1KNB A;  3HO5 A;  4BTI A;  1HZ8 A;  2BO2 A;  1KKE A;  5JBC E;  4GU4 A;  1EPG A;  3GIS X;  2Y82 B;  1RFN B;  3SW2 A;  1OB1 C;  3LN0 A;  1X7A L;  4E1G A;  2I9B A;  1KSN B;  4JYU L;  1G1S A;  2OYE P;  1EBV A;  4K6W A;  1ATA A;  2WGT A;  2Y38 A;  2TGF A;  2WYJ B;  4Y79 B;  3BQ4 A;  3N8W A;  1V1H A;  5COX A;  2B7D L;  3QMO A;  2WPK E;  2G00 L;  2KL7 A;  2VRS A;  3O8E A;  4D63 A;  2KB9 A;  2W2O E;  1P69 A;  2P3F N;  3H5C B;  4Z6A L;  1FE2 A;  5JB8 E;  2BOU A;  1IQF L;  2BOX A;  1IP0 A;  4G1M B;  1ATE A;  2W2N E;  2BOH A;  4XQB A;  4A94 C;  4M11 A;  5JVY A;  3FBY A;  1IQM L;  1F0R B;  2XBX L;  5KIR A;  1IQL L;  3F6U L;  3LAQ A;  3N8Z A;  3SOQ A;  1COU A;  1GK5 A;  3V65 B;  1UZJ A;  4ZXX L;  3HS5 A;  4YT7 L;  2W3I B;  2WST A;  1YUG A;  2H9E L;  1KLI L;  4Z0K B;  2HOX A;  1NZI A;  4XLW A;  1KLJ L;  5L2Y L;  2UWL B;  1FSB A;  2VWO L;  1W7X L;  2W2M E;  1I0U A;  1EAI C;  2AYL A;  1FF7 A;  4RRZ A;  2J2J A;  4RRY A;  1YO8 A;  5IKQ A;  3N8Y B;  1QIU A;  1J9C L;  4OTY A;  1CVW L;  3S6X A;  1IQJ L;  5F1A A;  3BPS E;  3FFG L;  3HO4 A;  1DDX A;  1FFM A;  1LPZ A;  1WHE A;  1IQE L;  3CS7 L;  3F0Y A;  3Q3K B;  3RR3 A;  4Y6D B;  5JB9 E;  4NG9 L;  3KQE L;  4K6T A;  2XBY L;  3KK6 A;  3PGH A;  2J38 B;  1CX2 A;  5K0H B;  5IKT A;  2VWL L;  5CIS A;  2YGP A;  3TH3 L;  2OYU P;  1L3Y A;  2K2T A;  5MHS A;  1FJS L;  1KAC A;  1NT0 A;  2FLG A;  4RUT A;  1TOZ A;  1HAF A;  5FDQ A;  2WZP P;  4K6U A;  3F1S B;  2GD4 A;  5CKN A;  2MGR A;  1IOE L;  3KQD L;  1MQ5 L;  3N8Y A;  2WGU A;  3BT1 A;  2WYG B;  4NGA L;  1LMM A;  2WFT A;  2FLR L;  1L5G B;  4CUE A;  4X8U L;  1EQH A;  2W2P E;  2BT7 A;  2XC4 L;  3KQC L;  2P26 A;  3C9A C;  1O5D L;  1P6A A;  4Y71 B;  3NJP C;  1EPH A;  3KRK A;  3LIW B;  2W2Q E;  5IKV A;  3QH0 A;  4XL8 A;  3NTB A;  2BMG A;  1V1I A;  2BZV A;  2UWO B;  5E8D A;  3N8V A;  3HS6 A;  1G2M B;  1SZB A;  4WYJ A;  1FAX L;  2VH0 B;  1JBU L;  1U67 A;  4YZU B;  1NFU B;  2UWP B;  1Z6C A;  2MHP A;  2P3F L;  4D62 A;  3CA7 A;  2PHB B;  1ATB A;  2P3T A;  1CCV A;  3KQB L;  3M36 L;  3FCS B;  1EMN A;  1Z6E L;  1YGC L;  3HO3 A;  4CW8 A;  1EPI A;  2IUM A;  4ODB A;  4XC5 A;  2BQW A;  1IOX A;  1HCG B;  4A7I A;  1DVA L;  1HT5 A;  4ZXY L;  2W9L C;  4Y7B B;  2VJ3 A;  1XKB A;  4PH9 A;  2BSF A;  4YT6 L;  3OLT A;  1N1I A;  4ZDG A;  1IVO C;  5JVZ A;  2J95 B;  3TBD A;  4D0E A;  3K9X A;  4LMF A;  5L2Z L;  3P5B L;  1YUK B;  2VVC K;  3ZPE A;  3U7U G;  3ZPF A;  4RS0 A;  2KV4 A;  1U8C B;  2VWN L;  1QFK L;  2WG4 B;  1LK9 A;  1K37 A;  2YGO A;  1URK A;  4ZAE B;  4Y76 B;  2M74 A;  4Y7A B;  4MMZ B;  1IGZ A;  1IQK L;  3CEN L;  1NFW B;  1EQG A;  1F0S B;  1W8B L;  3ZYJ B;  4X8V L;  1IQN L;  1IQH L;  3KL6 B;  1F7E A;  4LIY A;  2FD6 A;  3Q7D A;  4X8T L;  2DDU A;  1FAK L;  4CSY A;  1DIY A;  1UXB A;  4K6V A;  2JJL A;  2PUQ L;  2P95 L;  3V64 C;  2KNI A;  2P94 L;  3NTG A;  4XBM A;  1KLO A;  3QND A;  1CEJ A;  5CKM A;  3NT1 A;  4BXW A;  1PRH A;  2J34 B;  2J4I B;  4BTU A;  2WPM E;  2Q1J B;  4RRW A;  3ELA L;  3BT2 A;  1AUT L;  2YGQ A;  3R05 A;  4BDX A;  4JYV L;  1MQ6 L;  3MDL A;  2Y80 B;  2WPI E;  1JL9 A; 
#chains in the Genus database with same CATH homology
 5MHS A;  2JJL A;  2VRS A;  4ODB A;  1QIU A;  2OJ5 A;  3EOY A;  4XC5 A;  1V1H A;  2OJ6 A;  2BSF A;  1V1I A;  2BT8 A;  2BT7 A;  3S6X A;  1KKE A;  4GU3 A;  4GU4 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.