1QIUA

A triple beta-spiral in the adenovirus fibre shaft reveals a new structural motif for biological fibres
Total Genus 53

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
264
structure length
264
Chain Sequence
VSIKKSSGLNFDNTAIAINAGKGLEFDTNTSESPDINPIKTKIGSGIDYNENGAMITKLGAGLSFDNSGAITIGNKNDDKLTLWTTPDPSPNCRIHSDNDCKFTLVLTKCGSQVLATVAALAVSGDLSSMTGTVASVSIFLRFDQNGVLMENSSLKKHYWNFRNGNSTNANPYTNAVGFMPNLLAYPKTQSQTAKNNIVSQVYLHGDKTKPMILTITLNGTSESTETSEVSTYSMSFTWSWESGKYTTETFATNSYTFSYIAQE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Fibre protein
source organism Human adenovirus 2
publication title A triple beta-spiral in the adenovirus fibre shaft reveals a new structural motif for a fibrous protein.
pubmed doi rcsb
molecule keywords ADENOVIRUS FIBRE
total genus 53
structure length 264
sequence length 264
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 1999-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00541 Adeno_knob Adenoviral fibre protein (knob domain)
A PF00608 Adeno_shaft Adenoviral fibre protein (repeat/shaft region)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.25.20 Mainly Beta Ribbon Laminin reovirus attachment protein sigma1; domain 1 1qiuA01
2.60.90.10 Mainly Beta Sandwich Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) Adenovirus pIV-related, attachment domain 1qiuA02
2WGUA 2WBVA 1UXAA 4ZDGA 1H7ZA 3O8EA 2JJLA 3L88A 3CNCA 1QHVA 1KNBA 2BT7A 4K6TA 4XL8A 4WYJA 3QNDA 2WBWA 4K6UA 4GU4A 1QIUA 1UXBA 1NOBA 4GU3A 4K6WA 2J1KC 3EXVA 1UXEA 2J2JA 4LIYA 2WSTA 3EXWA 1V1IA 3L89A 1V1HA 2O39A 3N0IA 1KACA 4K6VA 1KKEA 4ATZA 4XQAA 4XQBA 2BT8A 2WGTA 1P69A 3S6XA 2BZVA 3BQ4A 3F0YA 2W9LC 2VRSA 2BZUA 2J12A 2QLKA 2BSFA 1P6AA
chains in the Genus database with same CATH superfamily
5F1AA 1IOEL 1IQIL 2JJLA 4D90A 4RRYA 2WPJE 1F0RB 3F1SB 3CA7A 1PTHA 2WPIE 3HO3A 2WPME 4COXA 4LIYA 4E1GA 3ASIA 1L3YA 1ZAQA 1U8CB 2Y80B 2F9BL 3KCGL 3U73A 2I9BA 3KL6B 2BZVA 2HORA 1HAFA 1QFKL 5IKQA 1LPKA 4YZUB 1G1RA 3N8YA 4BDWA 4JZEL 2PHBB 2BT7A 2MGRA 1FJSL 1EPJA 1FF7A 4Y7AB 4CUEA 3HS6A 3EOYA 1L5GB 3KK6A 1KLJL 1JL9A 3TGFA 3GCWE 5IKVA 1FAXL 1ATEA 4X8TL 5JBBE 1APQA 2WGTA 5IKRA 1UZKA 4NA9L 2WZPP 3KQDL 6COXA 3ZYGA 3BT2A 3EGFA 2FLGA 4ZHAB 1YUGA 4ODBA 1ATDA 1B9WA 1G1TA 1PGEA 2UWLB 3KQCL 1N7DA 2XBVL 4JYVL 2OYEP 4A94C 2J1KC 1WHFA 3R05A 2O39A 4D0EA 3TK6B 1AUTL 2BMGA 1IQFL 4OTYA 3N8ZA 1YUKB 3F6UL 4Y71B 3NTGA 3LC3B 1G2LB 2EI7B 2P94L 2P28B 1K37A 1YUFA 2Q1JB 3C9AC 1NPEB 1UZPA 1V3XB 1EPHA 4C16A 5JW1A 1SZBA 5JB8E 1QIUA 2VWOL 2MHPA 3CFWA 1WU1B 1K36A 3QCWA 3NJPC 1NQLB 3ZPEA 2PUQL 4XQBA 4D62A 2BZ6L 2KB9A 3V64C 1HAEA 2VJ3A 2YGOA 2Y5FL 2YGPA 2W86A 1DVAL 1J9CL 3CNCA 2XC4L 1G1SA 3U7UG 2OJ6A 2W2QE 2BO2A 2PR3B 3EXVA 1DDXA 2WSTA 1NZIA 2W2OE 4ATZA 3OLUA 4FM5A 3N8WB 1Z6CA 2MGPA 2VVUL 1CCFA 1HZ8A 2Y5HL 2J94B 1LPZA 2J4IB 2Y81B 1EQGA 1UXAA 5L2ZL 5COXA 5JB9E 3LTGD 2FLBL 4K6UA 2XBWL 2XBYL 1XFEA 1FFMA 1Q4GA 3NT1A 3TZIA 1UXBA 2RNLA 3KQBL 3CS7L 2VVCK 2CJIB 1HT5A 1HT8A 1LMJA 3BT1A 1EPGA 3HPTA 3Q3KB 4JZFL 1TPGA 1HREA 2VWNL 3ZYIB 2ADXA 2VRSA 1P6AA 1HJ7A 1EMOA 3SOVA 4G1MB 1OB1C 3SW2A 4CSYA 1QHVA 3Q7DA 2H9EC 4O02B 4RRXA 5K0HB 1ATAA 1FE2A 4BTTA 1ADXA 2Y82B 4D63A 1F7MA 1I0UA 3L89A 3TH3L 1KACA 4ISIL 1IOXA 2BQ6A 4CW8A 4O1ZA 1FSBA 3BQ4A 2BQWA 3F0YA 1W8BL 3LN0A 1O5DL 4Y76B 5IKTA 4Y79B 1BF9A 4OTJA 2OYUP 5JBAE 2BOXA 1NFXB 2W3IB 4GU3A 2W3KB 1JBUL 4Y7BB 1CEJA 1ATBA 2TGFA 1XKAL 2RA0L 1KKEA 1N1IA 3LAQA 3LTFB 2FLRL 3MQEA 5CKQA 5KN5C 1KLOA 1UZQA 2P95L 1IQKL 3CENL 4NG9L 2J12A 5FDQA 1PRHA 4XC5A 1NFYB 1H7ZA 3O8EA 3TK5B 3P5BL 2WG4B 1MOXC 2BOHA 3KQEL 1CVWL 1IGZA 2VTWA 1IQLL 1LMMA 2W2PE 2P3FN 4RRZA 3M36L 4M10A 4TGFA 1PFXL 1EPIA 2I9AA 1G1QA 2KV4A 4ZXYL 1A3PA 2FD6A 3RR3A 1WHEA 2WBVA 4X8VL 2HOXA 3GCXE 1F7EA 3HS5A 2WBWA 3HO5A 1IVOC 2G00L 4MMZB 1CQEA 2KL7A 2WG3C 5L2YL 3ZYJB 3HO4A 3SOBB 1APOA 1YO8A 2EI8B 2J2UB 2K2TA 2BSFA 2UWOB 4ZXXL 1C5MF 1EAIC 1IGXA 4Z6AL 1HX2A 1IP0A 4MMXB 3FCSB 1NT0A 2VVVL 1IQML 4WYJA 3ENSA 1YGCL 2VWMK 4AQTA 3IITB 4PH9A 3V65B 4ZH8B 1MQ5L 5JBCE 4M11A 2UWPB 1X7AL 2WPHE 2M74A 5I46L 1DQBA 2BZUA 1TOZA 5CISA 4XLWA 3K9XA 1EQHA 2K2SB 2P26A 1HRFA 1Z6EL 3FFGL 3N8WA 5CKMA 5JVZA 5CKNA 5L30L 2EI6B 2P3FL 3POYA 4BTUA 3N8VA 5MHSA 4Z0LA 4MMYB 1IQGL 3DEMA 4BDXA 1IQNL 2VWLL 1DX5I 2Y7ZB 1IQJL 2VH6B 5E8DA 1IJQA 2NPRA 2XBXL 4D0FA 1NFUB 4CUDA 2WPKE 1KLIL 1XDTR 5KIRA 2QLKA 2Y38A 2JKHL 2WGUA 2XC0L 2WFTA 4JYUL 1GK5A 2BOKL 1LQDA 3L88A 2J95B 2XC5L 3N8XA 1KIGL 1P9JA 4YT6L 2J38B 1V1IA 1M1XB 3OLTA 2P93L 3QMOA 3QH0A 1FAKL 4BTIA 4YT7L 2KNIA 2P16L 3N0IA 5JVYA 4XQAA 1IQEL 1RFNB 2AYLA 1G2MB 3H5CB 5F19A 4CUFA 4NGAL 1CCVA 3QNDA 1COUA 2BQ7A 2B7DL 1EMNA 4RUTA 1XKBA 2W26B 1KNBA 4K6TA 4XL8A 1DIYA 1EBVA 3SOQA 4ZAEB 4GU4A 1CVUA 4XL1A 1U67A 2P3TA 4K6WA 2YGQA 4Y6DB 2J2JA 4BXSA 1V1HA 1EZQB 4A7IA 1TLEA 1UZJA 3GISX 3LIWB 2H9EL 4XBMA 4BXWA 2BT8A 4Z0KB 3TBDA 4X8SL 3S6XA 1HCGB 2VH0B 2D1JB 4X8UL 4JZDL 1W7XL 4ZDGA 3LC5B 2RHPA 2Y7XB 2BOUA 2GD4A 3M37L 1PXXA 2Y5GL 4ISHL 1LPGA 1EGFA 1MQ6L 1CX2A 3BPSE 2P3UA 1UXEA 2WYJB 2DDUA 3FBYA 4K6VA 1JV2B 4LORA 1URKA 3HS7A 2OJ5A 2W2ME 2W9LC 2FZZL 1P0SL 2WYGB 3LN1A 1NFWB 3IJEB 2IUNA 3PGHA 1LK9A 3ZPFA 1KSNB 3NTBA 5EGMB 2WFXB 1NOBA 4LMFA 3KRKA 2J34B 4RS0A 3EXWA 1IQHL 2WPLE 1P69A 2IUMA 3N8YB 2W2NE 4RRWA 3ELAL 1F0SB 3MDLA
chains in the Genus database with same CATH topology
2WGUA 2WBVA 1UXAA 4ZDGA 1H7ZA 3O8EA 2JJLA 3L88A 3CNCA 1QHVA 1KNBA 2BT7A 4K6TA 4XL8A 4WYJA 3QNDA 2WBWA 4K6UA 4GU4A 1QIUA 1UXBA 1NOBA 4GU3A 4K6WA 2J1KC 3EXVA 1UXEA 2J2JA 4LIYA 2WSTA 3EXWA 1V1IA 3L89A 1V1HA 2O39A 3N0IA 1KACA 4K6VA 1KKEA 4ATZA 4XQAA 4XQBA 2BT8A 2WGTA 1P69A 3S6XA 2BZVA 3BQ4A 3F0YA 2W9LC 2VRSA 2BZUA 2J12A 2QLKA 2BSFA 1P6AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WGU A;  2WBV A;  1UXA A;  4ZDG A;  1H7Z A;  3O8E A;  2JJL A;  3L88 A;  3CNC A;  1QHV A;  1KNB A;  2BT7 A;  4K6T A;  4XL8 A;  4WYJ A;  3QND A;  2WBW A;  4K6U A;  4GU4 A;  1QIU A;  1UXB A;  1NOB A;  4GU3 A;  4K6W A;  2J1K C;  3EXV A;  1UXE A;  2J2J A;  4LIY A;  2WST A;  3EXW A;  1V1I A;  3L89 A;  1V1H A;  2O39 A;  3N0I A;  1KAC A;  4K6V A;  1KKE A;  4ATZ A;  4XQA A;  4XQB A;  2BT8 A;  2WGT A;  1P69 A;  3S6X A;  2BZV A;  3BQ4 A;  3F0Y A;  2W9L C;  2VRS A;  2BZU A;  2J12 A;  2QLK A;  2BSF A;  1P6A A; 
#chains in the Genus database with same CATH topology
 5F1A A;  1IOE L;  1IQI L;  2JJL A;  4D90 A;  4RRY A;  2WPJ E;  1F0R B;  3F1S B;  3CA7 A;  1PTH A;  2WPI E;  3HO3 A;  2WPM E;  4COX A;  4LIY A;  4E1G A;  3ASI A;  1L3Y A;  1ZAQ A;  1U8C B;  2Y80 B;  2F9B L;  3KCG L;  3U73 A;  2I9B A;  3KL6 B;  2BZV A;  2HOR A;  1HAF A;  1QFK L;  5IKQ A;  1LPK A;  4YZU B;  1G1R A;  3N8Y A;  4BDW A;  4JZE L;  2PHB B;  2BT7 A;  2MGR A;  1FJS L;  1EPJ A;  1FF7 A;  4Y7A B;  4CUE A;  3HS6 A;  3EOY A;  1L5G B;  3KK6 A;  1KLJ L;  1JL9 A;  3TGF A;  3GCW E;  5IKV A;  1FAX L;  1ATE A;  4X8T L;  5JBB E;  1APQ A;  2WGT A;  5IKR A;  1UZK A;  4NA9 L;  2WZP P;  3KQD L;  6COX A;  3ZYG A;  3BT2 A;  3EGF A;  2FLG A;  4ZHA B;  1YUG A;  4ODB A;  1ATD A;  1B9W A;  1G1T A;  1PGE A;  2UWL B;  3KQC L;  1N7D A;  2XBV L;  4JYV L;  2OYE P;  4A94 C;  2J1K C;  1WHF A;  3R05 A;  2O39 A;  4D0E A;  3TK6 B;  1AUT L;  2BMG A;  1IQF L;  4OTY A;  3N8Z A;  1YUK B;  3F6U L;  4Y71 B;  3NTG A;  3LC3 B;  1G2L B;  2EI7 B;  2P94 L;  2P28 B;  1K37 A;  1YUF A;  2Q1J B;  3C9A C;  1NPE B;  1UZP A;  1V3X B;  1EPH A;  4C16 A;  5JW1 A;  1SZB A;  5JB8 E;  1QIU A;  2VWO L;  2MHP A;  3CFW A;  1WU1 B;  1K36 A;  3QCW A;  3NJP C;  1NQL B;  3ZPE A;  2PUQ L;  4XQB A;  4D62 A;  2BZ6 L;  2KB9 A;  3V64 C;  1HAE A;  2VJ3 A;  2YGO A;  2Y5F L;  2YGP A;  2W86 A;  1DVA L;  1J9C L;  3CNC A;  2XC4 L;  1G1S A;  3U7U G;  2OJ6 A;  2W2Q E;  2BO2 A;  2PR3 B;  3EXV A;  1DDX A;  2WST A;  1NZI A;  2W2O E;  4ATZ A;  3OLU A;  4FM5 A;  3N8W B;  1Z6C A;  2MGP A;  2VVU L;  1CCF A;  1HZ8 A;  2Y5H L;  2J94 B;  1LPZ A;  2J4I B;  2Y81 B;  1EQG A;  1UXA A;  5L2Z L;  5COX A;  5JB9 E;  3LTG D;  2FLB L;  4K6U A;  2XBW L;  2XBY L;  1XFE A;  1FFM A;  1Q4G A;  3NT1 A;  3TZI A;  1UXB A;  2RNL A;  3KQB L;  3CS7 L;  2VVC K;  2CJI B;  1HT5 A;  1HT8 A;  1LMJ A;  3BT1 A;  1EPG A;  3HPT A;  3Q3K B;  4JZF L;  1TPG A;  1HRE A;  2VWN L;  3ZYI B;  2ADX A;  2VRS A;  1P6A A;  1HJ7 A;  1EMO A;  3SOV A;  4G1M B;  1OB1 C;  3SW2 A;  4CSY A;  1QHV A;  3Q7D A;  2H9E C;  4O02 B;  4RRX A;  5K0H B;  1ATA A;  1FE2 A;  4BTT A;  1ADX A;  2Y82 B;  4D63 A;  1F7M A;  1I0U A;  3L89 A;  3TH3 L;  1KAC A;  4ISI L;  1IOX A;  2BQ6 A;  4CW8 A;  4O1Z A;  1FSB A;  3BQ4 A;  2BQW A;  3F0Y A;  1W8B L;  3LN0 A;  1O5D L;  4Y76 B;  5IKT A;  4Y79 B;  1BF9 A;  4OTJ A;  2OYU P;  5JBA E;  2BOX A;  1NFX B;  2W3I B;  4GU3 A;  2W3K B;  1JBU L;  4Y7B B;  1CEJ A;  1ATB A;  2TGF A;  1XKA L;  2RA0 L;  1KKE A;  1N1I A;  3LAQ A;  3LTF B;  2FLR L;  3MQE A;  5CKQ A;  5KN5 C;  1KLO A;  1UZQ A;  2P95 L;  1IQK L;  3CEN L;  4NG9 L;  2J12 A;  5FDQ A;  1PRH A;  4XC5 A;  1NFY B;  1H7Z A;  3O8E A;  3TK5 B;  3P5B L;  2WG4 B;  1MOX C;  2BOH A;  3KQE L;  1CVW L;  1IGZ A;  2VTW A;  1IQL L;  1LMM A;  2W2P E;  2P3F N;  4RRZ A;  3M36 L;  4M10 A;  4TGF A;  1PFX L;  1EPI A;  2I9A A;  1G1Q A;  2KV4 A;  4ZXY L;  1A3P A;  2FD6 A;  3RR3 A;  1WHE A;  2WBV A;  4X8V L;  2HOX A;  3GCX E;  1F7E A;  3HS5 A;  2WBW A;  3HO5 A;  1IVO C;  2G00 L;  4MMZ B;  1CQE A;  2KL7 A;  2WG3 C;  5L2Y L;  3ZYJ B;  3HO4 A;  3SOB B;  1APO A;  1YO8 A;  2EI8 B;  2J2U B;  2K2T A;  2BSF A;  2UWO B;  4ZXX L;  1C5M F;  1EAI C;  1IGX A;  4Z6A L;  1HX2 A;  1IP0 A;  4MMX B;  3FCS B;  1NT0 A;  2VVV L;  1IQM L;  4WYJ A;  3ENS A;  1YGC L;  2VWM K;  4AQT A;  3IIT B;  4PH9 A;  3V65 B;  4ZH8 B;  1MQ5 L;  5JBC E;  4M11 A;  2UWP B;  1X7A L;  2WPH E;  2M74 A;  5I46 L;  1DQB A;  2BZU A;  1TOZ A;  5CIS A;  4XLW A;  3K9X A;  1EQH A;  2K2S B;  2P26 A;  1HRF A;  1Z6E L;  3FFG L;  3N8W A;  5CKM A;  5JVZ A;  5CKN A;  5L30 L;  2EI6 B;  2P3F L;  3POY A;  4BTU A;  3N8V A;  5MHS A;  4Z0L A;  4MMY B;  1IQG L;  3DEM A;  4BDX A;  1IQN L;  2VWL L;  1DX5 I;  2Y7Z B;  1IQJ L;  2VH6 B;  5E8D A;  1IJQ A;  2NPR A;  2XBX L;  4D0F A;  1NFU B;  4CUD A;  2WPK E;  1KLI L;  1XDT R;  5KIR A;  2QLK A;  2Y38 A;  2JKH L;  2WGU A;  2XC0 L;  2WFT A;  4JYU L;  1GK5 A;  2BOK L;  1LQD A;  3L88 A;  2J95 B;  2XC5 L;  3N8X A;  1KIG L;  1P9J A;  4YT6 L;  2J38 B;  1V1I A;  1M1X B;  3OLT A;  2P93 L;  3QMO A;  3QH0 A;  1FAK L;  4BTI A;  4YT7 L;  2KNI A;  2P16 L;  3N0I A;  5JVY A;  4XQA A;  1IQE L;  1RFN B;  2AYL A;  1G2M B;  3H5C B;  5F19 A;  4CUF A;  4NGA L;  1CCV A;  3QND A;  1COU A;  2BQ7 A;  2B7D L;  1EMN A;  4RUT A;  1XKB A;  2W26 B;  1KNB A;  4K6T A;  4XL8 A;  1DIY A;  1EBV A;  3SOQ A;  4ZAE B;  4GU4 A;  1CVU A;  4XL1 A;  1U67 A;  2P3T A;  4K6W A;  2YGQ A;  4Y6D B;  2J2J A;  4BXS A;  1V1H A;  1EZQ B;  4A7I A;  1TLE A;  1UZJ A;  3GIS X;  3LIW B;  2H9E L;  4XBM A;  4BXW A;  2BT8 A;  4Z0K B;  3TBD A;  4X8S L;  3S6X A;  1HCG B;  2VH0 B;  2D1J B;  4X8U L;  4JZD L;  1W7X L;  4ZDG A;  3LC5 B;  2RHP A;  2Y7X B;  2BOU A;  2GD4 A;  3M37 L;  1PXX A;  2Y5G L;  4ISH L;  1LPG A;  1EGF A;  1MQ6 L;  1CX2 A;  3BPS E;  2P3U A;  1UXE A;  2WYJ B;  2DDU A;  3FBY A;  4K6V A;  1JV2 B;  4LOR A;  1URK A;  3HS7 A;  2OJ5 A;  2W2M E;  2W9L C;  2FZZ L;  1P0S L;  2WYG B;  3LN1 A;  1NFW B;  3IJE B;  2IUN A;  3PGH A;  1LK9 A;  3ZPF A;  1KSN B;  3NTB A;  5EGM B;  2WFX B;  1NOB A;  4LMF A;  3KRK A;  2J34 B;  4RS0 A;  3EXW A;  1IQH L;  2WPL E;  1P69 A;  2IUM A;  3N8Y B;  2W2N E;  4RRW A;  3ELA L;  1F0S B;  3MDL A; 
#chains in the Genus database with same CATH homology
 2WGU A;  2WBV A;  1UXA A;  4ZDG A;  1H7Z A;  3O8E A;  2JJL A;  3L88 A;  3CNC A;  1QHV A;  1KNB A;  2BT7 A;  4K6T A;  4XL8 A;  4WYJ A;  3QND A;  2WBW A;  4K6U A;  4GU4 A;  1QIU A;  1UXB A;  1NOB A;  4GU3 A;  4K6W A;  2J1K C;  3EXV A;  1UXE A;  2J2J A;  4LIY A;  2WST A;  3EXW A;  1V1I A;  3L89 A;  1V1H A;  2O39 A;  3N0I A;  1KAC A;  4K6V A;  1KKE A;  4ATZ A;  4XQA A;  4XQB A;  2BT8 A;  2WGT A;  1P69 A;  3S6X A;  2BZV A;  3BQ4 A;  3F0Y A;  2W9L C;  2VRS A;  2BZU A;  2J12 A;  2QLK A;  2BSF A;  1P6A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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