The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
35
|
sequence length |
176
|
structure length |
176
|
Chain Sequence |
SLESTASHGLSFSPPLSVADGVVSLDMDPYFCSQRVSLTSYSAEAQLMQFRWMARGTNGSSDTIDMTVNAHCHGRRTDYMMSSTGNLTVTSNVVLLTFDLSDITHIPSDLARLVPSAGFQAASFPVDVSFTRDSATHAYQAYGVYSSSRVFTITFPTGGDGTANIRSLTVRTGIDT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the Carboxy-Terminal Receptor-Binding Domain of Avian Reovirus Fibre Sigmac
pubmed doi rcsb |
| molecule tags |
Viral protein
|
| source organism |
Avian reovirus
|
| molecule keywords |
SIGMA C CAPSID PROTEIN
|
| total genus |
35
|
| structure length |
176
|
| sequence length |
176
|
| ec nomenclature | |
| pdb deposition date | 2005-05-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF04582 | Reo_sigmaC | Reovirus sigma C capsid protein C-terminal domain |
| A | PF17750 | Reo_sigmaC_M | Reovirus sigma C capsid protein triple beta spiral |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Ribbon | Laminin | reovirus attachment protein sigma1; domain 1 | ||
| Mainly Beta | Sandwich | Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) | Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) |
#chains in the Genus database with same CATH superfamily 1QIU A; 2BSF A; 3S6X A; 1V1H A; 2BT8 A; 2JJL A; 4GU4 A; 2BT7 A; 2VRS A; 1KKE A; 1V1I A; 4GU3 A; #chains in the Genus database with same CATH topology 1PXX A; 1Z6E L; 1G1S A; 1KLJ L; 2TGF A; 1LPG A; 4BDX A; 5CIS A; 1HX2 A; 1V3X B; 4XL8 A; 5IKV A; 2UWP B; 2KNI A; 2WPI E; 2Y82 B; 2WGU A; 1MOX C; 2BQW A; 2BZ6 L; 1IQG L; 1IJQ A; 2W2O E; 2VTW A; 3HO5 A; 3N0I A; 1CX2 A; 3TK5 B; 1V1H A; 3M37 L; 4JZF L; 1RFN B; 2WPJ E; 5MHS A; 2G00 L; 1UXB A; 4D0F A; 1NZI A; 5IKR A; 3KQD L; 3KQE L; 5JVY A; 4Y7B B; 1M1X B; 3TBD A; 1UZP A; 4PH9 A; 3GCX E; 2YGO A; 2P16 L; 1F7E A; 5L2Y L; 3CS7 L; 2NPR A; 4X8S L; 1FAK L; 2J38 B; 3CFW A; 2WPM E; 2OJ5 A; 1LPZ A; 4JZE L; 1U8C B; 4ATZ A; 3KQB L; 2VH6 B; 1IQK L; 3V65 B; 2WYJ B; 3ENS A; 4A94 C; 1DVA L; 5JW1 A; 2RA0 L; 5FDQ A; 5COX A; 3NTB A; 1IP0 A; 2K2S B; 1LMJ A; 5CKM A; 3L89 A; 2VWN L; 2WZP P; 3RR3 A; 2P3T A; 1HZ8 A; 4X8U L; 2I9A A; 2Q1J B; 2JKH L; 3HS6 A; 1W7X L; 2FLB L; 2P95 L; 1DDX A; 1BF9 A; 4CUF A; 4OTY A; 4Z0L A; 4RRY A; 3QND A; 4TGF A; 4Y76 B; 3Q7D A; 1KSN B; 2BQ6 A; 4ISI L; 2BT7 A; 1EAI C; 2P93 L; 3POY A; 2BOU A; 4ZDG A; 1LQD A; 1ADX A; 1IGX A; 2VWM K; 1NOB A; 4ZH8 B; 1IQN L; 1G1R A; 3KL6 B; 3SW2 A; 2VWO L; 1IOX A; 2H9E C; 4XQA A; 4JYV L; 3SOB B; 1FSB A; 2XC5 L; 3FCS B; 4D90 A; 4BDW A; 1EPI A; 1G1Q A; 2ADX A; 1PGE A; 3MDL A; 4XQB A; 1ATA A; 1COU A; 1NFU B; 2Y7X B; 2O39 A; 4ZXY L; 1YO8 A; 1NQL B; 3HS7 A; 2MGP A; 2WFX B; 4MMZ B; 4GU3 A; 4LIY A; 3TZI A; 1HAE A; 4XLW A; 1DIY A; 3V64 C; 4E1G A; 1ATB A; 1C5M F; 2JJL A; 2WPK E; 1URK A; 1XDT R; 2MHP A; 1EZQ B; 1H7Z A; 4K6W A; 4YT7 L; 3N8Z A; 4CUD A; 2OYU P; 2J95 B; 1GK5 A; 2HOR A; 1F0S B; 1IOE L; 4LOR A; 2OYE P; 4FM5 A; 1HCG B; 2I9B A; 3M36 L; 2IUN A; 3IIT B; 3BT1 A; 3SOV A; 2FZZ L; 2KB9 A; 1G2L B; 4CUE A; 3F0Y A; 2W2M E; 2W2N E; 4X8T L; 4NGA L; 2WFT A; 3EGF A; 4K6V A; 2W2Q E; 1FJS L; 1UZK A; 2K2T A; 1ATE A; 4D0E A; 2P3F N; 1LPK A; 5E8D A; 2Y5H L; 2CJI B; 2QLK A; 1DQB A; 3KK6 A; 4LMF A; 1KAC A; 6COX A; 1P9J A; 3CNC A; 3QH0 A; 5EGM B; 4ODB A; 4M10 A; 3HO3 A; 1Z6C A; 2BT8 A; 5JBC E; 1HRF A; 2WPL E; 2XBW L; 4BTT A; 1FE2 A; 5K0H B; 3R05 A; 1EMN A; 3N8Y A; 3ZYG A; 2J94 B; 4Y71 B; 1PFX L; 1B9W A; 2VRS A; 3H5C B; 1IQE L; 2UWO B; 1KNB A; 3CA7 A; 3FBY A; 1O5D L; 3L88 A; 5KN5 C; 2J2J A; 4ISH L; 3N8W A; 3N8X A; 2B7D L; 5CKN A; 3KQC L; 3NT1 A; 2W3K B; 1UZJ A; 1NFX B; 2AYL A; 1FF7 A; 1LMM A; 4JYU L; 1J9C L; 5IKQ A; 5L30 L; 1YUF A; 1IQL L; 2D1J B; 3LN0 A; 3EXV A; 3HO4 A; 1PTH A; 1ATD A; 1L3Y A; 2FLG A; 1NFY B; 5JB8 E; 2W3I B; 3BT2 A; 3GIS X; 5JBA E; 1EMO A; 1TLE A; 3HS5 A; 2J34 B; 3LAQ A; 4A7I A; 2M74 A; 2W26 B; 2VJ3 A; 1L5G B; 2EI6 B; 2BMG A; 2J1K C; 3BPS E; 3NTG A; 2BOK L; 4C16 A; 3GCW E; 3Q3K B; 4CSY A; 2VWL L; 2RHP A; 2VH0 B; 2XBV L; 2WGT A; 4D63 A; 1EGF A; 3LN1 A; 2XC0 L; 4G1M B; 2EI8 B; 4Z6A L; 4WYJ A; 1PRH A; 4RRX A; 5JBB E; 5JVZ A; 1HAF A; 2PR3 B; 1TPG A; 2P3F L; 2BO2 A; 5JB9 E; 4Y6D B; 4XL1 A; 5F1A A; 1IQH L; 2WBV A; 4Y79 B; 3ZYI B; 3OLU A; 4NG9 L; 1U67 A; 3DEM A; 1CCV A; 2WST A; 2Y81 B; 1KLI L; 3SOQ A; 1A3P A; 1W8B L; 3C9A C; 3OLT A; 1AUT L; 3ELA L; 1XKB A; 3FFG L; 1APQ A; 3U73 A; 1JV2 B; 4O02 B; 1N7D A; 2W2P E; 1FFM A; 1QIU A; 4RUT A; 1XFE A; 1UXA A; 2VVC K; 2XBX L; 1QHV A; 1IQM L; 2XBY L; 1EQG A; 2RNL A; 4CW8 A; 2F9B L; 1K36 A; 1I0U A; 3ZPE A; 3ZYJ B; 2WYG B; 2WG4 B; 3LTF B; 3IJE B; 2P28 B; 4Y7A B; 4BXS A; 1HT5 A; 1N1I A; 4YT6 L; 3ASI A; 3LC5 B; 4O1Z A; 4BXW A; 2Y7Z B; 5CKQ A; 2P3U A; 1KKE A; 3LIW B; 1P0S L; 1YUK B; 4MMY B; 4JZD L; 2J2U B; 1X7A L; 1APO A; 2WPH E; 2BSF A; 2IUM A; 2BOH A; 2P94 L; 2OJ6 A; 2BZU A; 4NA9 L; 3CEN L; 3QMO A; 3HPT A; 1CVW L; 4BTI A; 4ZAE B; 1WHE A; 1CQE A; 2W86 A; 3F1S B; 4D62 A; 5F19 A; 1CEJ A; 2EI7 B; 2Y38 A; 1MQ5 L; 1XKA L; 3O8E A; 4GU4 A; 3LC3 B; 1YGC L; 3K9X A; 3MQE A; 2GD4 A; 3QCW A; 2DDU A; 1V1I A; 4RS0 A; 3EOY A; 2XC4 L; 2KL7 A; 1IVO C; 3KRK A; 3TGF A; 4Z0K B; 3PGH A; 1DX5 I; 1IQJ L; 1ZAQ A; 2UWL B; 2VVV L; 1CVU A; 1Q4G A; 2J12 A; 2YGP A; 1LK9 A; 2WG3 C; 4COX A; 1JBU L; 4YZU B; 1QFK L; 2PUQ L; 3S6X A; 4XBM A; 3U7U G; 1KLO A; 2J4I B; 1CCF A; 1NT0 A; 3BQ4 A; 5KIR A; 3N8Y B; 1NPE B; 2Y5F L; 1EBV A; 2BOX A; 1FAX L; 5I46 L; 1YUG A; 4RRW A; 5L2Z L; 1OB1 C; 1F7M A; 3N8V A; 5IKT A; 3EXW A; 1UZQ A; 1IGZ A; 2W9L C; 3TH3 L; 3NJP C; 4XC5 A; 2Y5G L; 1P6A A; 3ZPF A; 4K6T A; 4RRZ A; 2PHB B; 1TOZ A; 2MGR A; 1K37 A; 3N8W B; 2WBW A; 1HJ7 A; 1EPH A; 2H9E L; 4M11 A; 4K6U A; 2P26 A; 3LTG D; 1UXE A; 4BTU A; 1G2M B; 1EPJ A; 1SZB A; 2HOX A; 4OTJ A; 4ZHA B; 1F0R B; 4ZXX L; 1HRE A; 2Y80 B; 1IQF L; 1JL9 A; 2BQ7 A; 1MQ6 L; 1P69 A; 3KCG L; 2KV4 A; 1HT8 A; 2BZV A; 1EQH A; 2FD6 A; 3F6U L; 2VVU L; 3TK6 B; 1WHF A; 1WU1 B; 2YGQ A; 4MMX B; 4X8V L; 1G1T A; 2FLR L; 1EPG A; 3P5B L; 4AQT A; 1IQI L; 1KIG L; 1NFW B; #chains in the Genus database with same CATH homology 4D62 A; 2IUN A; 2BT8 A; 2JJL A; 3ZPF A; 4GU4 A; 1KKE A; 2VTW A; 1QIU A; 3S6X A; 1V1H A; 2BT7 A; 2BSF A; 2IUM A; 1V1I A; 4CW8 A; 2VRS A; 3ZPE A; 4D63 A; 4GU3 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
