The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
56
|
sequence length |
326
|
structure length |
326
|
Chain Sequence |
GRTCPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPINTLKCTPRVCPFAGILENGAVRYTTFEYPNTISFSCNTGFYLNGADSAKCTEEGKWSPELPVCAPIICPPPSIPTFATLRVYKPSAGNNSLYRDTAVFECLPQHAMFGNDTITCTTHGNWTKLPECREVKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEIECTKLGNWSAMPSCKASCKLPVKKATVVYQGERVKIQEKFKNGMLHGDKVSFFCKNKEKKCSYTEDAQCIDGTIEVPKCFKEHSSLAFWKTDASDVKPC
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of human beta2-glycoprotein I: implications for phospholipid binding and the antiphospholipid syndrome.
pubmed doi rcsb |
| molecule keywords |
BETA2-GLYCOPROTEIN-I
|
| molecule tags |
Signaling protein
|
| total genus |
56
|
| structure length |
326
|
| sequence length |
326
|
| ec nomenclature | |
| pdb deposition date | 1999-07-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00084 | Sushi | Sushi repeat (SCR repeat) |
| A | PF09014 | Sushi_2 | Beta-2-glycoprotein-1 fifth domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Ribbon | Complement Module; domain 1 | Complement Module, domain 1 | ||
| Mainly Beta | Ribbon | Complement Module; domain 1 | Complement Module, domain 1 | ||
| Mainly Beta | Ribbon | Complement Module; domain 1 | Complement Module, domain 1 | ||
| Mainly Beta | Ribbon | Complement Module; domain 1 | Complement Module, domain 1 | ||
| Mainly Beta | Ribbon | Complement Module; domain 1 | Complement Module, domain 1 |
#chains in the Genus database with same CATH superfamily 1H2Q P; 2O39 C; 2WII C; 5HYU B; 1HFI A; 3R62 A; 5HYT B; 2EHF A; 4AYD A; 1E88 A; 1OK2 A; 1GPZ A; 4YNX A; 2XRB A; 4ZH1 D; 4J38 B; 2RKY A; 2XQW C; 3M7P A; 3O8E B; 1NWV A; 2RLP A; 3OXU D; 2KRI A; 2B5I D; 2JGW A; 1OK1 A; 2CG6 A; 3OED C; 3NFP I; 3GOV A; 4A5W B; 1G4G A; 4B2R A; 5FO8 C; 3ZRZ A; 1E8B A; 1C1Z A; 2LOJ A; 2W80 A; 1ELV A; 1FBR A; 1TPG A; 2JGX A; 1LY2 A; 4LOT A; 5HZP B; 1TPN A; 1OK3 A; 1H04 P; 4F4O C; 4B2S A; 5I0Q B; 1H03 P; 4AYI A; 2BZM A; 3SW0 X; 1OK9 A; 1QUB A; 1MD8 A; 1OJW A; 2V8E A; 2G7I A; 1SRZ A; 2XRD A; 2CKU A; 4KKD A; 2A55 A; 1ZJK A; 4LOS A; 3TVJ A; 3MQL A; 2W81 A; 5JPM G; 2RLQ A; 3OP8 A; 2QY0 A; 2KMS A; 4MUC A; 1O9A A; 2CG7 A; 3CAL A; 3ERB A; 4FXG G; 1OJY A; 4C16 A; 1E5G A; 2XWB F; 1Z92 B; 1QGB A; 4PZ5 A; 3ZD2 A; 2JRA A; 4JHS A; 1VVC A; 1VVD A; 1QO6 A; 4IGD A; 1GKN A; 2XWJ I; 4K12 A; 2IZ3 A; 4DJZ A; 1G4F A; 2UWN A; 1HCC A; 3T5O A; 3KZJ A; 4CSY A; 2YRA A; 3IU3 I; 5HYP A; 1GKG A; 3GXE A; 2RL0 A; 1CKL A; 3EJH A; 1OJV A; 1UOT P; 1H2P P; 3L89 M; 2RKZ A; 2YBY A; 1TPM A; 1SS2 A; 3RJ3 D; 2IZ4 A; 3IX0 A; 1HFH A; 1GHQ B; 2ERJ A; 2MCY A; 2MCZ A; 3ZD1 A; 3INB C; 4ONT D; 3KXV A; 4AYM A; 4AYE A; 1PPQ A; 1Q3X A; 4WJG 2; 1MD7 A; 1U5M A; 2EC3 A; #chains in the Genus database with same CATH topology 1H2Q P; 2O39 C; 4N7E A; 2WII C; 5HYU B; 2I2L A; 1HFI A; 3R62 A; 5HYT B; 2EHF A; 4AYD A; 1E88 A; 2X2Z A; 3FGT A; 1OK2 A; 1GPZ A; 4YNX A; 2XRB A; 4ZH1 D; 4J38 B; 2RKY A; 2XQW C; 3M7P A; 3O8E B; 1NWV A; 2RLP A; 3OXU D; 2KRI A; 2B5I D; 2JGW A; 1RLH A; 1OK1 A; 2CG6 A; 3OED C; 3NJA A; 4YIZ A; 3NFP I; 3GOV A; 4A5W B; 1G4G A; 4B2R A; 5FO8 C; 3ZRZ A; 1E8B A; 3WSX A; 1C1Z A; 2LOJ A; 2W80 A; 3CI0 J; 1ELV A; 1FBR A; 1TPG A; 2JGX A; 4PO7 A; 1LY2 A; 4LOT A; 5HZP B; 1TPN A; 1OK3 A; 1H04 P; 4F4O C; 4B2S A; 5I0Q B; 1H03 P; 4AYI A; 2BZM A; 3SW0 X; 1OK9 A; 1QUB A; 3ZLD A; 5DN4 A; 1MD8 A; 1OJW A; 2V8E A; 2G7I A; 1SRZ A; 2ZYC A; 4BWC A; 2Y8T A; 2XRD A; 2CKU A; 4KKD A; 2A55 A; 1ZJK A; 4LOS A; 3ZLE A; 3TVJ A; 3MQL A; 2W81 A; 5JPM G; 2RLQ A; 3OP8 A; 3WSY A; 2QY0 A; 2KMS A; 4MUC A; 4MSL A; 1O9A A; 2CG7 A; 3CAL A; 3ERB A; 4FXG G; 1OJY A; 4C16 A; 1E5G A; 3VWO A; 2XWB F; 1Z92 B; 1QGB A; 3K3T A; 4PZ5 A; 3ZD2 A; 2JRA A; 4JHS A; 1VVC A; 1VVD A; 2Y8S A; 1QO6 A; 4IGD A; 1GKN A; 2XWJ I; 4APL A; 4K12 A; 2IZ3 A; 4DJZ A; 1G4F A; 2UWN A; 1HCC A; 3T5O A; 3KZJ A; 4CSY A; 2YRA A; 3IU3 I; 5HYP A; 1GKG A; 3GXE A; 2RL0 A; 3F6K A; 3FGR A; 1CKL A; 3EJH A; 1OJV A; 1UOT P; 1H2P P; 3L89 M; 2RKZ A; 2YBY A; 1TPM A; 1SS2 A; 3RJ3 D; 2IZ4 A; 3IX0 A; 1HFH A; 1GHQ B; 2ERJ A; 2MCY A; 2MCZ A; 3ZD1 A; 3INB C; 4ONT D; 3KXV A; 4AYM A; 4AYE A; 1PPQ A; 1Q3X A; 2Y8R A; 4WJG 2; 1MD7 A; 1U5M A; 2EC3 A; 5DN5 A; #chains in the Genus database with same CATH homology 1H2Q P; 2O39 C; 2WII C; 5HYU B; 1HFI A; 3R62 A; 5HYT B; 2EHF A; 4AYD A; 1E88 A; 1OK2 A; 1GPZ A; 4YNX A; 2XRB A; 4ZH1 D; 4J38 B; 2RKY A; 2XQW C; 3M7P A; 3O8E B; 1NWV A; 2RLP A; 3OXU D; 2KRI A; 2B5I D; 2JGW A; 1OK1 A; 2CG6 A; 3OED C; 3NFP I; 3GOV A; 4A5W B; 1G4G A; 4B2R A; 5FO8 C; 3ZRZ A; 1E8B A; 1C1Z A; 2LOJ A; 2W80 A; 1ELV A; 1FBR A; 1TPG A; 2JGX A; 1LY2 A; 4LOT A; 5HZP B; 1TPN A; 1OK3 A; 1H04 P; 4F4O C; 4B2S A; 5I0Q B; 1H03 P; 4AYI A; 2BZM A; 3SW0 X; 1OK9 A; 1QUB A; 1MD8 A; 1OJW A; 2V8E A; 2G7I A; 1SRZ A; 2XRD A; 2CKU A; 4KKD A; 2A55 A; 1ZJK A; 4LOS A; 3TVJ A; 3MQL A; 2W81 A; 5JPM G; 2RLQ A; 3OP8 A; 2QY0 A; 2KMS A; 4MUC A; 1O9A A; 2CG7 A; 3CAL A; 3ERB A; 4FXG G; 1OJY A; 4C16 A; 1E5G A; 2XWB F; 1Z92 B; 1QGB A; 4PZ5 A; 3ZD2 A; 2JRA A; 4JHS A; 1VVC A; 1VVD A; 1QO6 A; 4IGD A; 1GKN A; 2XWJ I; 4K12 A; 2IZ3 A; 4DJZ A; 1G4F A; 2UWN A; 1HCC A; 3T5O A; 3KZJ A; 4CSY A; 2YRA A; 3IU3 I; 5HYP A; 1GKG A; 3GXE A; 2RL0 A; 1CKL A; 3EJH A; 1OJV A; 1UOT P; 1H2P P; 3L89 M; 2RKZ A; 2YBY A; 1TPM A; 1SS2 A; 3RJ3 D; 2IZ4 A; 3IX0 A; 1HFH A; 1GHQ B; 2ERJ A; 2MCY A; 2MCZ A; 3ZD1 A; 3INB C; 4ONT D; 3KXV A; 4AYM A; 4AYE A; 1PPQ A; 1Q3X A; 4WJG 2; 1MD7 A; 1U5M A; 2EC3 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
