1EB4A

Histidine ammonia-lyase (hal) mutant f329a from pseudomonas putida
Total Genus 205

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
205
sequence length
507
structure length
506
Chain Sequence
TELTLKPGTLTLAQLRAIHAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTRIASHDLENLQRSLVLSHAAGIGAPLDDDLVRLIMVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLKGSVGDLAPLAHMSLVLLGEGKARYKGQWLSATEALAVAGLEPLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLGSRSPFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHKNADKVQDPYSLRCQPQVMGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNAHAEPVAMAADNLALAIAEIGSLSERRISLMMDKHMSQLPPFLVENGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLRKGLKTSAKLEKARQALRSEVAHYDRDRFFAPDIEKAVELLAKGSLTGLLPAGVLPSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-5)TII1 (6-9)AH4 (93-108)AH1 (12-20)TII5 (502-505)AH5 (116-128)S2 (24-27)AH2 (32-48)3H4 (318-320)TIV1 (53-56)TII2 (52-55)TIV2 (54-57)TI1 (62-65)O1 (65-67)AH3 (69-83)TII3 (186-189)S4 (130-132)TIV3 (110-113)TIV6 (312-315)AH9 (197-229)S5 (135-137)TIV4 (139-145)TVIII1 (414-417)TI2 (327-330)TIV5 (163-166)S6 (161-164)AH8 (189-194)AH11 (247-260)TII4 (452-455)O3 (273-275)3H3 (234-236)AH13 (280-308)S8 (315-317)S9 (322-324)TIV10 (412-415)AH14 (331-360)AH15 (381-399)TI3 (361-364)AH16 (420-451)TI4 (362-365)3H5 (369-371)TIV7 (363-366)TI5 (375-378)TIV8 (372-375)TI6 (401-404)TI8 (495-498)3H7 (498-500)3H1 (29-31)3H2 (60-62)AH6 (146-157)O2 (83-85)S3 (87-90)S7 (167-170)AH10 (238-244)AH18 (481-494)AH7 (171-178)TIV9 (374-377)3H6 (410-412)AH17 (459-470)AH12 (265-269)Updating...
connected with : NaN
molecule tags Lyase
source organism Pseudomonas putida
publication title Autocatalytic Peptide Cyclization During Chain Folding of Histidine Ammonia-Lyase.
pubmed doi rcsb
molecule keywords HISTIDINE AMMONIA-LYASE
total genus 205
structure length 506
sequence length 507
ec nomenclature ec 4.3.1.3: Histidine ammonia-lyase.
pdb deposition date 2001-07-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1eb4A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1eb4A02
1U15A 3CZOA 2HVGA 4APBA 2VD6A 1VDKA 1DOFA 1YISA 4FLCA 5EYVA 4EFCA 2PFMA 3GTDA 2O7FA 4BAAA 3R6QA 1FUPA 1TJWA 1FUOA 2O7EA 2O7BA 1XWOA 1FUQA 3NZ4A 4NSLA 2YIIA 1T6JA 2J91A 5EYTA 5F92A 2O7DA 2OHYA 1HY1A 4BABA 1I0AA 1HY0A 1TJVA 1AUWA 2O6YA 1GK3A 4EEIA 1JSWA 2NYFA 1FURA 3NO9A 4ADLA 3TV2A 1T6PA 1K7WA 4HGVA 4C6GA 4V2QA 3UNVA 1C3CA 3BHGA 4FFXA 2PTSA 3RRPA 2RJRA 1TJ7A 1Y2MA 1RE5A 1K62A 3C8TA 2X75A 3OCFA 2RJSA 4APAA 1YFMA 4C5RA 1GKJA 5F91A 1B8FA 2NYNA 4NLEA 3GZHA 1U16A 2PTQA 2QGAB 5HW2A 1DCNA 3KDZA 4C5SA 1Q5NA 4V2RA 3OCEA 3KDYA 1KQ7A 3R6VA 1YFEA 3E04A 1EB4A 4MX2A 4CQ5A 2O78A 2PTRA 5D6BA 3R6YA 1TJUA 1W27A 1C3UA 4C5UA 1GKMA 2FUSA 2QVEA 2E9FA 1J3UA 3RD8A 1GK2A 3QBPA 4ADMA
chains in the Genus database with same CATH superfamily
1U15A 3CZOA 2HVGA 4APBA 2VD6A 1VDKA 1DOFA 4WNLA 1YISA 4FLCA 5EYVA 4EFCA 2PFMA 3GTDA 2O7FA 4BAAA 3R6QA 5H8WA 1FUPA 1TJWA 1FUOA 2O7EA 1XLYA 3CRW1 2O7BA 1XWOA 1FUQA 3NZ4A 4NSLA 2YIIA 1T6JA 1XL8A 2J91A 5EYTA 5F92A 2VSFA 5M0JA 2O7DA 2OHYA 1HY1A 4BABA 5M0IA 1I0AA 1HY0A 4A15A 1TJVA 1AUWA 3QBPA 1GK3A 4EEIA 1JSWA 2NYFA 1XMDA 1FURA 3NO9A 4ADLA 3TV2A 1T6PA 1K7WA 4HGVA 4C6GA 4V2QA 3UNVA 1C3CA 3BHGA 4FFXA 2VL7A 2PTSA 3RRPA 2RJRA 1TJ7A 1Y2MA 1RE5A 1K62A 3C8TA 2X75A 3OCFA 2RJSA 4APAA 1YFMA 4C5RA 1GKJA 5F91A 1B8FA 2NYNA 4NLEA 3GZHA 1U16A 2PTQA 2QGAB 5HW2A 1DCNA 3KDZA 4C5SA 1Q5NA 4V2RA 1XL7A 2FELA 1XMCA 3OCEA 3KDYA 1KQ7A 3R6VA 1YFEA 3E04A 1EB4A 4MX2A 4CQ5A 2FENA 2O78A 2PTRA 5D6BA 3R6YA 1TJUA 1W27A 1C3UA 4C5UA 1GKMA 2FUSA 2E9FA 2QVEA 1J3UA 3CRVA 3RD8A 1GK2A 2O6YA 4ADMA
chains in the Genus database with same CATH topology
1U15A 3CZOA 2HVGA 4APBA 2VD6A 1VDKA 1DOFA 1YISA 4FLCA 5EYVA 4EFCA 2PFMA 3GTDA 2O7FA 4BAAA 3R6QA 1FUPA 1TJWA 1FUOA 2O7EA 2O7BA 1XWOA 1FUQA 3NZ4A 4NSLA 2YIIA 1T6JA 2J91A 5EYTA 5F92A 2O7DA 2OHYA 1HY1A 4BABA 1I0AA 1HY0A 1TJVA 1AUWA 2O6YA 1GK3A 4EEIA 1JSWA 2NYFA 1FURA 3NO9A 4ADLA 3TV2A 1T6PA 1K7WA 4HGVA 4C6GA 4V2QA 3UNVA 1C3CA 3BHGA 4FFXA 2PTSA 3RRPA 2RJRA 1TJ7A 1Y2MA 1RE5A 1K62A 3C8TA 2X75A 3OCFA 2RJSA 4APAA 1YFMA 4C5RA 1GKJA 5F91A 1B8FA 2NYNA 4NLEA 3GZHA 1U16A 2PTQA 2QGAB 5HW2A 1DCNA 3KDZA 4C5SA 1Q5NA 4V2RA 3OCEA 3KDYA 1KQ7A 3R6VA 1YFEA 3E04A 1EB4A 4MX2A 4CQ5A 2O78A 2PTRA 5D6BA 3R6YA 1TJUA 1W27A 1C3UA 4C5UA 1GKMA 2FUSA 2QVEA 2E9FA 1J3UA 3RD8A 1GK2A 3QBPA 4ADMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U15 A;  3CZO A;  2HVG A;  4APB A;  2VD6 A;  1VDK A;  1DOF A;  1YIS A;  4FLC A;  5EYV A;  4EFC A;  2PFM A;  3GTD A;  2O7F A;  4BAA A;  3R6Q A;  1FUP A;  1TJW A;  1FUO A;  2O7E A;  2O7B A;  1XWO A;  1FUQ A;  3NZ4 A;  4NSL A;  2YII A;  1T6J A;  2J91 A;  5EYT A;  5F92 A;  2O7D A;  2OHY A;  1HY1 A;  4BAB A;  1I0A A;  1HY0 A;  1TJV A;  1AUW A;  2O6Y A;  1GK3 A;  4EEI A;  1JSW A;  2NYF A;  1FUR A;  3NO9 A;  4ADL A;  3TV2 A;  1T6P A;  1K7W A;  4HGV A;  4C6G A;  4V2Q A;  3UNV A;  1C3C A;  3BHG A;  4FFX A;  2PTS A;  3RRP A;  2RJR A;  1TJ7 A;  1Y2M A;  1RE5 A;  1K62 A;  3C8T A;  2X75 A;  3OCF A;  2RJS A;  4APA A;  1YFM A;  4C5R A;  1GKJ A;  5F91 A;  1B8F A;  2NYN A;  4NLE A;  3GZH A;  1U16 A;  2PTQ A;  2QGA B;  5HW2 A;  1DCN A;  3KDZ A;  4C5S A;  1Q5N A;  4V2R A;  3OCE A;  3KDY A;  1KQ7 A;  3R6V A;  1YFE A;  3E04 A;  1EB4 A;  4MX2 A;  4CQ5 A;  2O78 A;  2PTR A;  5D6B A;  3R6Y A;  1TJU A;  1W27 A;  1C3U A;  4C5U A;  1GKM A;  2FUS A;  2QVE A;  2E9F A;  1J3U A;  3RD8 A;  1GK2 A;  3QBP A;  4ADM A; 
#chains in the Genus database with same CATH topology
 1U15 A;  3CZO A;  2HVG A;  4APB A;  2VD6 A;  1VDK A;  1DOF A;  4WNL A;  1YIS A;  4FLC A;  5EYV A;  4EFC A;  2PFM A;  3GTD A;  2O7F A;  4BAA A;  3R6Q A;  5H8W A;  1FUP A;  1TJW A;  1FUO A;  2O7E A;  1XLY A;  3CRW 1;  2O7B A;  1XWO A;  1FUQ A;  3NZ4 A;  4NSL A;  2YII A;  1T6J A;  1XL8 A;  2J91 A;  5EYT A;  5F92 A;  2VSF A;  5M0J A;  2O7D A;  2OHY A;  1HY1 A;  4BAB A;  5M0I A;  1I0A A;  1HY0 A;  4A15 A;  1TJV A;  1AUW A;  3QBP A;  1GK3 A;  4EEI A;  1JSW A;  2NYF A;  1XMD A;  1FUR A;  3NO9 A;  4ADL A;  3TV2 A;  1T6P A;  1K7W A;  4HGV A;  4C6G A;  4V2Q A;  3UNV A;  1C3C A;  3BHG A;  4FFX A;  2VL7 A;  2PTS A;  3RRP A;  2RJR A;  1TJ7 A;  1Y2M A;  1RE5 A;  1K62 A;  3C8T A;  2X75 A;  3OCF A;  2RJS A;  4APA A;  1YFM A;  4C5R A;  1GKJ A;  5F91 A;  1B8F A;  2NYN A;  4NLE A;  3GZH A;  1U16 A;  2PTQ A;  2QGA B;  5HW2 A;  1DCN A;  3KDZ A;  4C5S A;  1Q5N A;  4V2R A;  1XL7 A;  2FEL A;  1XMC A;  3OCE A;  3KDY A;  1KQ7 A;  3R6V A;  1YFE A;  3E04 A;  1EB4 A;  4MX2 A;  4CQ5 A;  2FEN A;  2O78 A;  2PTR A;  5D6B A;  3R6Y A;  1TJU A;  1W27 A;  1C3U A;  4C5U A;  1GKM A;  2FUS A;  2E9F A;  2QVE A;  1J3U A;  3CRV A;  3RD8 A;  1GK2 A;  2O6Y A;  4ADM A; 
#chains in the Genus database with same CATH homology
 1U15 A;  3CZO A;  2HVG A;  4APB A;  2VD6 A;  1VDK A;  1DOF A;  1YIS A;  4FLC A;  5EYV A;  4EFC A;  2PFM A;  3GTD A;  2O7F A;  4BAA A;  3R6Q A;  1FUP A;  1TJW A;  1FUO A;  2O7E A;  2O7B A;  1XWO A;  1FUQ A;  3NZ4 A;  4NSL A;  2YII A;  1T6J A;  2J91 A;  5EYT A;  5F92 A;  2O7D A;  2OHY A;  1HY1 A;  4BAB A;  1I0A A;  1HY0 A;  1TJV A;  1AUW A;  2O6Y A;  1GK3 A;  4EEI A;  1JSW A;  2NYF A;  1FUR A;  3NO9 A;  4ADL A;  3TV2 A;  1T6P A;  1K7W A;  4HGV A;  4C6G A;  4V2Q A;  3UNV A;  1C3C A;  3BHG A;  4FFX A;  2PTS A;  3RRP A;  2RJR A;  1TJ7 A;  1Y2M A;  1RE5 A;  1K62 A;  3C8T A;  2X75 A;  3OCF A;  2RJS A;  4APA A;  1YFM A;  4C5R A;  1GKJ A;  5F91 A;  1B8F A;  2NYN A;  4NLE A;  3GZH A;  1U16 A;  2PTQ A;  2QGA B;  5HW2 A;  1DCN A;  3KDZ A;  4C5S A;  1Q5N A;  4V2R A;  3OCE A;  3KDY A;  1KQ7 A;  3R6V A;  1YFE A;  3E04 A;  1EB4 A;  4MX2 A;  4CQ5 A;  2O78 A;  2PTR A;  5D6B A;  3R6Y A;  1TJU A;  1W27 A;  1C3U A;  4C5U A;  1GKM A;  2FUS A;  2QVE A;  2E9F A;  1J3U A;  3RD8 A;  1GK2 A;  3QBP A;  4ADM A; 
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