1GK2A

Histidine ammonia-lyase (hal) mutant f329g from pseudomonas putida
Total Genus 194

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
194
sequence length
509
structure length
509
Chain Sequence
TELTLKPGTLTLAQLRAIHAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTRIASHDLENLQRSLVLSHAAGIGAPLDDDLVRLIMVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGEGKARYKGQWLSATEALAVAGLEPLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLGSRSPFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHKNADKVQDPYSLRCQPQVMGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNGHAEPVAMAADNLALAIAEIGSLSERRISLMMDKHMSQLPPFLVENGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLRKGLKTSAKLEKARQALRSEVAHYDRDRFFAPDIEKAVELLAKGSLTGLLPAGVLPSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-5)TII1 (6-9)AH4 (93-108)AH1 (12-20)AH2 (32-48)TIV3 (110-113)TIV1 (53-56)TII2 (52-55)TI1 (62-65)3H2 (60-62)AH3 (69-83)AH8 (189-194)S6 (161-164)S4 (130-132)AH9 (197-229)S8 (315-317)TII3 (186-189)TIV10 (312-315)AH5 (116-128)S5 (135-137)AH14 (331-360)TIV4 (141-144)AH13 (280-308)AH11 (247-260)TII4 (452-455)TIV8 (272-275)TIV6 (260-263)3H3 (234-236)AH10 (238-244)AH17 (459-470)AH12 (265-269)TIV7 (270-273)TII5 (502-505)3H4 (318-320)TI2 (327-330)TI3 (361-364)TI4 (362-365)TIV11 (363-366)3H5 (369-371)TIV12 (372-375)AH15 (381-399)AH16 (420-451)TIV13 (374-377)TI5 (375-378)TI6 (401-404)TI7 (402-405)TIV14 (412-415)3H6 (410-412)3H7 (498-500)AH18 (481-494)S2 (24-27)3H1 (29-31)S3 (87-90)S7 (167-170)AH7 (171-178)S9 (322-324)TI8 (495-498)O1 (83-85)AH6 (146-157)Updating...
connected with : NaN
molecule tags Lyase
source organism Pseudomonas putida
publication title Autocatalytic Peptide Cyclization During Chain Folding of Histidine Ammonia-Lyase.
pubmed doi rcsb
molecule keywords HISTIDINE AMMONIA-LYASE
total genus 194
structure length 509
sequence length 509
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.3: Histidine ammonia-lyase.
pdb deposition date 2001-08-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1gk2A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1gk2A02
2O7DA 5HW2A 3C8TA 2O6YA 1I0AA 4ADLA 1C3CA 3UNVA 4BABA 1GK3A 5D6BA 1J3UA 4C5SA 1U16A 1Q5NA 1GK2A 5F91A 1YFEA 3NO9A 1HY0A 1K7WA 2O7BA 3TV2A 2O7EA 1HY1A 4BAAA 2VD6A 1FUQA 3RD8A 2O78A 4V2RA 1FUOA 3OCFA 1TJWA 4NLEA 2OHYA 2PTRA 4V2QA 5EYVA 2PFMA 2HVGA 2NYFA 3GTDA 3R6QA 1T6PA 1B8FA 1TJ7A 1YFMA 1YISA 4FLCA 3BHGA 1FUPA 1JSWA 3KDYA 3R6VA 4ADMA 4EEIA 5F92A 2RJRA 1XWOA 4C5RA 2YIIA 4FFXA 4MX2A 1GKMA 4EFCA 4C6GA 3E04A 1TJUA 3R6YA 1VDKA 1GKJA 1Y2MA 3NZ4A 1FURA 2PTQA 3OCEA 1K62A 4NSLA 1RE5A 1TJVA 3RRPA 3QBPA 2FUSA 2PTSA 4CQ5A 1DCNA 4HGVA 1W27A 5EYTA 2E9FA 1AUWA 2NYNA 2QGAB 2J91A 1KQ7A 1U15A 1C3UA 3GZHA 2O7FA 4APAA 3CZOA 1T6JA 1DOFA 1EB4A 3KDZA 2RJSA 2QVEA 4APBA 4C5UA 2X75A
chains in the Genus database with same CATH superfamily
2O7DA 2VL7A 5HW2A 3C8TA 2FENA 2VSFA 2O6YA 1I0AA 3CRVA 1XMCA 4ADLA 1C3CA 1XMDA 3UNVA 1GK3A 4BABA 5D6BA 1J3UA 1XL7A 4C5SA 1U16A 5M0JA 1Q5NA 1GK2A 5F91A 1YFEA 3NO9A 2FELA 1HY0A 1K7WA 2O7BA 3TV2A 2O7EA 1HY1A 4BAAA 2VD6A 1FUQA 3RD8A 2O78A 4A15A 4V2RA 1FUOA 5H8WA 3OCFA 1XL8A 1TJWA 4NLEA 2OHYA 2PTRA 4V2QA 5EYVA 2PFMA 2HVGA 2NYFA 3GTDA 3R6QA 1T6PA 1B8FA 1TJ7A 1YFMA 1YISA 4FLCA 3BHGA 5M0IA 1FUPA 1JSWA 3KDYA 3R6VA 4ADMA 4EEIA 5F92A 2RJRA 1XWOA 3CRW1 4C5RA 2YIIA 4WNLA 4FFXA 4MX2A 1GKMA 4EFCA 4C6GA 3E04A 1TJUA 3R6YA 1VDKA 1GKJA 1Y2MA 3NZ4A 1FURA 2PTQA 3OCEA 1K62A 4NSLA 1RE5A 1TJVA 3RRPA 3QBPA 2FUSA 2PTSA 4CQ5A 1DCNA 4HGVA 1XLYA 1W27A 5EYTA 2E9FA 1AUWA 2NYNA 2QGAB 2J91A 1KQ7A 1U15A 1C3UA 3GZHA 2O7FA 4APAA 3CZOA 1T6JA 1DOFA 1EB4A 3KDZA 2RJSA 2QVEA 4APBA 4C5UA 2X75A
chains in the Genus database with same CATH topology
2O7DA 5HW2A 3C8TA 2O6YA 1I0AA 4ADLA 1C3CA 3UNVA 4BABA 1GK3A 5D6BA 1J3UA 4C5SA 1U16A 1Q5NA 1GK2A 5F91A 1YFEA 3NO9A 1HY0A 1K7WA 2O7BA 3TV2A 2O7EA 1HY1A 4BAAA 2VD6A 1FUQA 3RD8A 2O78A 4V2RA 1FUOA 3OCFA 1TJWA 4NLEA 2OHYA 2PTRA 4V2QA 5EYVA 2PFMA 2HVGA 2NYFA 3GTDA 3R6QA 1T6PA 1B8FA 1TJ7A 1YFMA 1YISA 4FLCA 3BHGA 1FUPA 1JSWA 3KDYA 3R6VA 4ADMA 4EEIA 5F92A 2RJRA 1XWOA 4C5RA 2YIIA 4FFXA 4MX2A 1GKMA 4EFCA 4C6GA 3E04A 1TJUA 3R6YA 1VDKA 1GKJA 1Y2MA 3NZ4A 1FURA 2PTQA 3OCEA 1K62A 4NSLA 1RE5A 1TJVA 3RRPA 3QBPA 2FUSA 2PTSA 4CQ5A 1DCNA 4HGVA 1W27A 5EYTA 2E9FA 1AUWA 2NYNA 2QGAB 2J91A 1KQ7A 1U15A 1C3UA 3GZHA 2O7FA 4APAA 3CZOA 1T6JA 1DOFA 1EB4A 3KDZA 2RJSA 2QVEA 4APBA 4C5UA 2X75A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O7D A;  5HW2 A;  3C8T A;  2O6Y A;  1I0A A;  4ADL A;  1C3C A;  3UNV A;  4BAB A;  1GK3 A;  5D6B A;  1J3U A;  4C5S A;  1U16 A;  1Q5N A;  1GK2 A;  5F91 A;  1YFE A;  3NO9 A;  1HY0 A;  1K7W A;  2O7B A;  3TV2 A;  2O7E A;  1HY1 A;  4BAA A;  2VD6 A;  1FUQ A;  3RD8 A;  2O78 A;  4V2R A;  1FUO A;  3OCF A;  1TJW A;  4NLE A;  2OHY A;  2PTR A;  4V2Q A;  5EYV A;  2PFM A;  2HVG A;  2NYF A;  3GTD A;  3R6Q A;  1T6P A;  1B8F A;  1TJ7 A;  1YFM A;  1YIS A;  4FLC A;  3BHG A;  1FUP A;  1JSW A;  3KDY A;  3R6V A;  4ADM A;  4EEI A;  5F92 A;  2RJR A;  1XWO A;  4C5R A;  2YII A;  4FFX A;  4MX2 A;  1GKM A;  4EFC A;  4C6G A;  3E04 A;  1TJU A;  3R6Y A;  1VDK A;  1GKJ A;  1Y2M A;  3NZ4 A;  1FUR A;  2PTQ A;  3OCE A;  1K62 A;  4NSL A;  1RE5 A;  1TJV A;  3RRP A;  3QBP A;  2FUS A;  2PTS A;  4CQ5 A;  1DCN A;  4HGV A;  1W27 A;  5EYT A;  2E9F A;  1AUW A;  2NYN A;  2QGA B;  2J91 A;  1KQ7 A;  1U15 A;  1C3U A;  3GZH A;  2O7F A;  4APA A;  3CZO A;  1T6J A;  1DOF A;  1EB4 A;  3KDZ A;  2RJS A;  2QVE A;  4APB A;  4C5U A;  2X75 A; 
#chains in the Genus database with same CATH topology
 2O7D A;  2VL7 A;  5HW2 A;  3C8T A;  2FEN A;  2VSF A;  2O6Y A;  1I0A A;  3CRV A;  1XMC A;  4ADL A;  1C3C A;  1XMD A;  3UNV A;  1GK3 A;  4BAB A;  5D6B A;  1J3U A;  1XL7 A;  4C5S A;  1U16 A;  5M0J A;  1Q5N A;  1GK2 A;  5F91 A;  1YFE A;  3NO9 A;  2FEL A;  1HY0 A;  1K7W A;  2O7B A;  3TV2 A;  2O7E A;  1HY1 A;  4BAA A;  2VD6 A;  1FUQ A;  3RD8 A;  2O78 A;  4A15 A;  4V2R A;  1FUO A;  5H8W A;  3OCF A;  1XL8 A;  1TJW A;  4NLE A;  2OHY A;  2PTR A;  4V2Q A;  5EYV A;  2PFM A;  2HVG A;  2NYF A;  3GTD A;  3R6Q A;  1T6P A;  1B8F A;  1TJ7 A;  1YFM A;  1YIS A;  4FLC A;  3BHG A;  5M0I A;  1FUP A;  1JSW A;  3KDY A;  3R6V A;  4ADM A;  4EEI A;  5F92 A;  2RJR A;  1XWO A;  3CRW 1;  4C5R A;  2YII A;  4WNL A;  4FFX A;  4MX2 A;  1GKM A;  4EFC A;  4C6G A;  3E04 A;  1TJU A;  3R6Y A;  1VDK A;  1GKJ A;  1Y2M A;  3NZ4 A;  1FUR A;  2PTQ A;  3OCE A;  1K62 A;  4NSL A;  1RE5 A;  1TJV A;  3RRP A;  3QBP A;  2FUS A;  2PTS A;  4CQ5 A;  1DCN A;  4HGV A;  1XLY A;  1W27 A;  5EYT A;  2E9F A;  1AUW A;  2NYN A;  2QGA B;  2J91 A;  1KQ7 A;  1U15 A;  1C3U A;  3GZH A;  2O7F A;  4APA A;  3CZO A;  1T6J A;  1DOF A;  1EB4 A;  3KDZ A;  2RJS A;  2QVE A;  4APB A;  4C5U A;  2X75 A; 
#chains in the Genus database with same CATH homology
 2O7D A;  5HW2 A;  3C8T A;  2O6Y A;  1I0A A;  4ADL A;  1C3C A;  3UNV A;  4BAB A;  1GK3 A;  5D6B A;  1J3U A;  4C5S A;  1U16 A;  1Q5N A;  1GK2 A;  5F91 A;  1YFE A;  3NO9 A;  1HY0 A;  1K7W A;  2O7B A;  3TV2 A;  2O7E A;  1HY1 A;  4BAA A;  2VD6 A;  1FUQ A;  3RD8 A;  2O78 A;  4V2R A;  1FUO A;  3OCF A;  1TJW A;  4NLE A;  2OHY A;  2PTR A;  4V2Q A;  5EYV A;  2PFM A;  2HVG A;  2NYF A;  3GTD A;  3R6Q A;  1T6P A;  1B8F A;  1TJ7 A;  1YFM A;  1YIS A;  4FLC A;  3BHG A;  1FUP A;  1JSW A;  3KDY A;  3R6V A;  4ADM A;  4EEI A;  5F92 A;  2RJR A;  1XWO A;  4C5R A;  2YII A;  4FFX A;  4MX2 A;  1GKM A;  4EFC A;  4C6G A;  3E04 A;  1TJU A;  3R6Y A;  1VDK A;  1GKJ A;  1Y2M A;  3NZ4 A;  1FUR A;  2PTQ A;  3OCE A;  1K62 A;  4NSL A;  1RE5 A;  1TJV A;  3RRP A;  3QBP A;  2FUS A;  2PTS A;  4CQ5 A;  1DCN A;  4HGV A;  1W27 A;  5EYT A;  2E9F A;  1AUW A;  2NYN A;  2QGA B;  2J91 A;  1KQ7 A;  1U15 A;  1C3U A;  3GZH A;  2O7F A;  4APA A;  3CZO A;  1T6J A;  1DOF A;  1EB4 A;  3KDZ A;  2RJS A;  2QVE A;  4APB A;  4C5U A;  2X75 A; 
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