1H04P

Human cd55 domains 3 & 4
Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
124
structure length
124
Chain Sequence
KSCPNPGAIANGQIDVPGGILFGATISFSCNTGYKLAGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDAGEWSGPPPECR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV2 (50-53)O1 (7-48)S2 (28-34)TVIII1 (57-60)TII1 (13-16)TII2 (25-28)S3 (38-41)S6 (63-66)O2 (34-64)TII3 (35-38)S5 (54-57)S4 (45-51)TIV3 (80-83)S12 (108-114)TIV4 (113-116)S10 (91-97)S7 (68-69)O3 (69-111)O4 (97-127)TII4 (75-78)S8 (78-80)TII5 (88-91)TVIII3 (106-109)S9 (87-88)TVIII2 (84-87)S11 (103-104)S13 (117-120)TIV1 (20-23)TII6 (98-101)Updating...
connected with : NaN
molecule tags Immune system protein
source organism Homo sapiens
publication title Mapping Cd55 Function. The Structure of Two Pathogen-Binding Domains at 1.7 A
pubmed doi rcsb
molecule keywords COMPLEMENT DECAY-ACCELERATING FACTOR
total genus 17
structure length 124
sequence length 124
ec nomenclature
pdb deposition date 2002-06-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
P PF00084 Sushi Sushi repeat (SCR repeat)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1h04P02
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1h04P01
1OK1A 1CKLA 4ZH1D 1E5GA 3KZJA 1E88A 1HFIA 2W81A 4LOTA 4AYEA 1SS2A 3MQLA 1H2PP 2KMSA 3ZRZA 1ELVA 2CG7A 2EHFA 3ZD2A 2KRIA 2XRDA 2G7IA 2YRAA 3SW0X 1TPGA 2JGWA 1QO6A 1OK2A 1HFHA 5HYTB 1QGBA 2QY0A 3T5OA 1GKNA 3RJ3D 4J38B 2YBYA 1HCCA 2RL0A 1Z92B 4ONTD 4DJZA 1Q3XA 4IGDA 1OJYA 1TPMA 1GKGA 3CALA 2XRBA 1U5MA 3OXUD 2O39C 2CKUA 3R62A 2B5ID 1ZJKA 1C1ZA 3NFPI 1G4GA 1E8BA 1TPNA 1MD8A 4WJG2 4F4OC 4LOSA 1NWVA 5FO8C 4C16A 2ERJA 5HYUB 1OK3A 3ERBA 4MUCA 3TVJA 1GPZA 2XQWC 3M7PA 2V8EA 4CSYA 4AYDA 3INBC 1GHQB 2MCZA 1VVCA 4A5WB 2JRAA 3GXEA 4KKDA 2MCYA 3IU3I 2XWBF 2A55A 3ZD1A 1H03P 5HYPA 4FXGG 1OK9A 2UWNA 3O8EB 1SRZA 5I0QB 4PZ5A 1MD7A 2RKYA 3GOVA 1G4FA 2IZ4A 4AYMA 1LY2A 1VVDA 2CG6A 2LOJA 2RKZA 2BZMA 4B2SA 3KXVA 2RLQA 2WIIC 2RLPA 1OJWA 2EC3A 1H2QP 1QUBA 3EJHA 4JHSA 1FBRA 1H04P 2JGXA 3IX0A 5JPMG 1O9AA 5HZPB 4YNXA 1OJVA 3OEDC 1UOTP 3L89M 4AYIA 2XWJI 4B2RA 4K12A 3OP8A 2W80A 1PPQA 2IZ3A
chains in the Genus database with same CATH superfamily
1OK1A 1CKLA 2I2LA 4ZH1D 1E5GA 4PO7A 2ZYCA 3KZJA 3F6KA 1E88A 1HFIA 2W81A 4LOTA 4AYEA 1SS2A 3MQLA 1H2PP 2KMSA 3ZRZA 1ELVA 2CG7A 2EHFA 3ZD2A 2KRIA 2XRDA 1RLHA 2G7IA 2YRAA 4BWCA 3SW0X 1TPGA 2JGWA 1QO6A 1OK2A 1HFHA 5HYTB 1QGBA 3CI0J 4YIZA 3ZLDA 2QY0A 3T5OA 1GKNA 3WSYA 3RJ3D 4J38B 2YBYA 1HCCA 2RL0A 1Z92B 4ONTD 4DJZA 1Q3XA 4IGDA 1OJYA 1TPMA 1GKGA 3CALA 2XRBA 1U5MA 3OXUD 2O39C 2CKUA 3R62A 2B5ID 1ZJKA 1C1ZA 3NFPI 2X2ZA 1G4GA 1E8BA 1TPNA 1MD8A 4WJG2 4F4OC 4LOSA 1NWVA 5FO8C 4C16A 2ERJA 5HYUB 1OK3A 3ERBA 4MUCA 3TVJA 1GPZA 2XQWC 3M7PA 2V8EA 4CSYA 4AYDA 4MSLA 3INBC 1GHQB 2MCZA 1VVCA 4A5WB 2JRAA 3GXEA 3K3TA 4KKDA 2MCYA 3IU3I 2XWBF 2Y8TA 2A55A 3ZD1A 1H03P 5HYPA 3NJAA 4FXGG 1OK9A 2UWNA 3O8EB 1SRZA 5I0QB 4PZ5A 1MD7A 2RKYA 2Y8SA 3GOVA 1G4FA 3VWOA 2IZ4A 4AYMA 1LY2A 1VVDA 2CG6A 2LOJA 3ZLEA 2RKZA 2BZMA 4B2SA 3KXVA 2RLQA 2Y8RA 3FGRA 2WIIC 2RLPA 1OJWA 2EC3A 1H2QP 1QUBA 3EJHA 4JHSA 1FBRA 1H04P 2JGXA 3FGTA 3IX0A 5DN5A 5JPMG 1O9AA 5HZPB 4YNXA 1OJVA 3OEDC 4N7EA 1UOTP 3L89M 4AYIA 2XWJI 5DN4A 4APLA 4B2RA 4K12A 3OP8A 2W80A 1PPQA 2IZ3A 3WSXA
chains in the Genus database with same CATH topology
1OK1A 1CKLA 4ZH1D 1E5GA 3KZJA 1E88A 1HFIA 2W81A 4LOTA 4AYEA 1SS2A 3MQLA 1H2PP 2KMSA 3ZRZA 1ELVA 2CG7A 2EHFA 3ZD2A 2KRIA 2XRDA 2G7IA 2YRAA 3SW0X 1TPGA 2JGWA 1QO6A 1OK2A 1HFHA 5HYTB 1QGBA 2QY0A 3T5OA 1GKNA 3RJ3D 4J38B 2YBYA 1HCCA 2RL0A 1Z92B 4ONTD 4DJZA 1Q3XA 4IGDA 1OJYA 1TPMA 1GKGA 3CALA 2XRBA 1U5MA 3OXUD 2O39C 2CKUA 3R62A 2B5ID 1ZJKA 1C1ZA 3NFPI 1G4GA 1E8BA 1TPNA 1MD8A 4WJG2 4F4OC 4LOSA 1NWVA 5FO8C 4C16A 2ERJA 5HYUB 1OK3A 3ERBA 4MUCA 3TVJA 1GPZA 2XQWC 3M7PA 2V8EA 4CSYA 4AYDA 3INBC 1GHQB 2MCZA 1VVCA 4A5WB 2JRAA 3GXEA 4KKDA 2MCYA 3IU3I 2XWBF 2A55A 3ZD1A 1H03P 5HYPA 4FXGG 1OK9A 2UWNA 3O8EB 1SRZA 5I0QB 4PZ5A 1MD7A 2RKYA 3GOVA 1G4FA 2IZ4A 4AYMA 1LY2A 1VVDA 2CG6A 2LOJA 2RKZA 2BZMA 4B2SA 3KXVA 2RLQA 2WIIC 2RLPA 1OJWA 2EC3A 1H2QP 1QUBA 3EJHA 4JHSA 1FBRA 1H04P 2JGXA 3IX0A 5JPMG 1O9AA 5HZPB 4YNXA 1OJVA 3OEDC 1UOTP 3L89M 4AYIA 2XWJI 4B2RA 4K12A 3OP8A 2W80A 1PPQA 2IZ3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OK1 A;  1CKL A;  4ZH1 D;  1E5G A;  3KZJ A;  1E88 A;  1HFI A;  2W81 A;  4LOT A;  4AYE A;  1SS2 A;  3MQL A;  1H2P P;  2KMS A;  3ZRZ A;  1ELV A;  2CG7 A;  2EHF A;  3ZD2 A;  2KRI A;  2XRD A;  2G7I A;  2YRA A;  3SW0 X;  1TPG A;  2JGW A;  1QO6 A;  1OK2 A;  1HFH A;  5HYT B;  1QGB A;  2QY0 A;  3T5O A;  1GKN A;  3RJ3 D;  4J38 B;  2YBY A;  1HCC A;  2RL0 A;  1Z92 B;  4ONT D;  4DJZ A;  1Q3X A;  4IGD A;  1OJY A;  1TPM A;  1GKG A;  3CAL A;  2XRB A;  1U5M A;  3OXU D;  2O39 C;  2CKU A;  3R62 A;  2B5I D;  1ZJK A;  1C1Z A;  3NFP I;  1G4G A;  1E8B A;  1TPN A;  1MD8 A;  4WJG 2;  4F4O C;  4LOS A;  1NWV A;  5FO8 C;  4C16 A;  2ERJ A;  5HYU B;  1OK3 A;  3ERB A;  4MUC A;  3TVJ A;  1GPZ A;  2XQW C;  3M7P A;  2V8E A;  4CSY A;  4AYD A;  3INB C;  1GHQ B;  2MCZ A;  1VVC A;  4A5W B;  2JRA A;  3GXE A;  4KKD A;  2MCY A;  3IU3 I;  2XWB F;  2A55 A;  3ZD1 A;  1H03 P;  5HYP A;  4FXG G;  1OK9 A;  2UWN A;  3O8E B;  1SRZ A;  5I0Q B;  4PZ5 A;  1MD7 A;  2RKY A;  3GOV A;  1G4F A;  2IZ4 A;  4AYM A;  1LY2 A;  1VVD A;  2CG6 A;  2LOJ A;  2RKZ A;  2BZM A;  4B2S A;  3KXV A;  2RLQ A;  2WII C;  2RLP A;  1OJW A;  2EC3 A;  1H2Q P;  1QUB A;  3EJH A;  4JHS A;  1FBR A;  1H04 P;  2JGX A;  3IX0 A;  5JPM G;  1O9A A;  5HZP B;  4YNX A;  1OJV A;  3OED C;  1UOT P;  3L89 M;  4AYI A;  2XWJ I;  4B2R A;  4K12 A;  3OP8 A;  2W80 A;  1PPQ A;  2IZ3 A; 
#chains in the Genus database with same CATH topology
 1OK1 A;  1CKL A;  2I2L A;  4ZH1 D;  1E5G A;  4PO7 A;  2ZYC A;  3KZJ A;  3F6K A;  1E88 A;  1HFI A;  2W81 A;  4LOT A;  4AYE A;  1SS2 A;  3MQL A;  1H2P P;  2KMS A;  3ZRZ A;  1ELV A;  2CG7 A;  2EHF A;  3ZD2 A;  2KRI A;  2XRD A;  1RLH A;  2G7I A;  2YRA A;  4BWC A;  3SW0 X;  1TPG A;  2JGW A;  1QO6 A;  1OK2 A;  1HFH A;  5HYT B;  1QGB A;  3CI0 J;  4YIZ A;  3ZLD A;  2QY0 A;  3T5O A;  1GKN A;  3WSY A;  3RJ3 D;  4J38 B;  2YBY A;  1HCC A;  2RL0 A;  1Z92 B;  4ONT D;  4DJZ A;  1Q3X A;  4IGD A;  1OJY A;  1TPM A;  1GKG A;  3CAL A;  2XRB A;  1U5M A;  3OXU D;  2O39 C;  2CKU A;  3R62 A;  2B5I D;  1ZJK A;  1C1Z A;  3NFP I;  2X2Z A;  1G4G A;  1E8B A;  1TPN A;  1MD8 A;  4WJG 2;  4F4O C;  4LOS A;  1NWV A;  5FO8 C;  4C16 A;  2ERJ A;  5HYU B;  1OK3 A;  3ERB A;  4MUC A;  3TVJ A;  1GPZ A;  2XQW C;  3M7P A;  2V8E A;  4CSY A;  4AYD A;  4MSL A;  3INB C;  1GHQ B;  2MCZ A;  1VVC A;  4A5W B;  2JRA A;  3GXE A;  3K3T A;  4KKD A;  2MCY A;  3IU3 I;  2XWB F;  2Y8T A;  2A55 A;  3ZD1 A;  1H03 P;  5HYP A;  3NJA A;  4FXG G;  1OK9 A;  2UWN A;  3O8E B;  1SRZ A;  5I0Q B;  4PZ5 A;  1MD7 A;  2RKY A;  2Y8S A;  3GOV A;  1G4F A;  3VWO A;  2IZ4 A;  4AYM A;  1LY2 A;  1VVD A;  2CG6 A;  2LOJ A;  3ZLE A;  2RKZ A;  2BZM A;  4B2S A;  3KXV A;  2RLQ A;  2Y8R A;  3FGR A;  2WII C;  2RLP A;  1OJW A;  2EC3 A;  1H2Q P;  1QUB A;  3EJH A;  4JHS A;  1FBR A;  1H04 P;  2JGX A;  3FGT A;  3IX0 A;  5DN5 A;  5JPM G;  1O9A A;  5HZP B;  4YNX A;  1OJV A;  3OED C;  4N7E A;  1UOT P;  3L89 M;  4AYI A;  2XWJ I;  5DN4 A;  4APL A;  4B2R A;  4K12 A;  3OP8 A;  2W80 A;  1PPQ A;  2IZ3 A;  3WSX A; 
#chains in the Genus database with same CATH homology
 1OK1 A;  1CKL A;  4ZH1 D;  1E5G A;  3KZJ A;  1E88 A;  1HFI A;  2W81 A;  4LOT A;  4AYE A;  1SS2 A;  3MQL A;  1H2P P;  2KMS A;  3ZRZ A;  1ELV A;  2CG7 A;  2EHF A;  3ZD2 A;  2KRI A;  2XRD A;  2G7I A;  2YRA A;  3SW0 X;  1TPG A;  2JGW A;  1QO6 A;  1OK2 A;  1HFH A;  5HYT B;  1QGB A;  2QY0 A;  3T5O A;  1GKN A;  3RJ3 D;  4J38 B;  2YBY A;  1HCC A;  2RL0 A;  1Z92 B;  4ONT D;  4DJZ A;  1Q3X A;  4IGD A;  1OJY A;  1TPM A;  1GKG A;  3CAL A;  2XRB A;  1U5M A;  3OXU D;  2O39 C;  2CKU A;  3R62 A;  2B5I D;  1ZJK A;  1C1Z A;  3NFP I;  1G4G A;  1E8B A;  1TPN A;  1MD8 A;  4WJG 2;  4F4O C;  4LOS A;  1NWV A;  5FO8 C;  4C16 A;  2ERJ A;  5HYU B;  1OK3 A;  3ERB A;  4MUC A;  3TVJ A;  1GPZ A;  2XQW C;  3M7P A;  2V8E A;  4CSY A;  4AYD A;  3INB C;  1GHQ B;  2MCZ A;  1VVC A;  4A5W B;  2JRA A;  3GXE A;  4KKD A;  2MCY A;  3IU3 I;  2XWB F;  2A55 A;  3ZD1 A;  1H03 P;  5HYP A;  4FXG G;  1OK9 A;  2UWN A;  3O8E B;  1SRZ A;  5I0Q B;  4PZ5 A;  1MD7 A;  2RKY A;  3GOV A;  1G4F A;  2IZ4 A;  4AYM A;  1LY2 A;  1VVD A;  2CG6 A;  2LOJ A;  2RKZ A;  2BZM A;  4B2S A;  3KXV A;  2RLQ A;  2WII C;  2RLP A;  1OJW A;  2EC3 A;  1H2Q P;  1QUB A;  3EJH A;  4JHS A;  1FBR A;  1H04 P;  2JGX A;  3IX0 A;  5JPM G;  1O9A A;  5HZP B;  4YNX A;  1OJV A;  3OED C;  1UOT P;  3L89 M;  4AYI A;  2XWJ I;  4B2R A;  4K12 A;  3OP8 A;  2W80 A;  1PPQ A;  2IZ3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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