1H2PP

Human cd55 domains 3 & 4
Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
125
structure length
125
Chain Sequence
KSCPNPGQIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECRG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV3 (50-53)O1 (7-48)S2 (28-34)TII1 (13-16)TII2 (25-28)TIV1 (20-23)TIV2 (43-46)S3 (38-41)S6 (63-66)O2 (34-64)S5 (56-57)TIV4 (51-54)TIV5 (80-83)S12 (108-113)S10 (91-97)S7 (68-69)O3 (69-111)TII4 (75-78)TII5 (88-91)S8 (78-80)TVIII2 (106-109)S9 (87-88)TVIII1 (84-87)S11 (102-104)TIV8 (114-117)TIV7 (113-116)O4 (97-127)TII3 (35-38)S4 (45-49)TIV6 (98-101)Updating...
connected with : NaN
molecule tags Immune system protein
source organism Homo sapiens
publication title Mapping Cd55 Function. The Structure of Two Pathogen-Binding Domains at 1.7 A
pubmed doi rcsb
molecule keywords COMPLEMENT DECAY-ACCELERATING FACTOR
total genus 15
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2002-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
P PF00084 Sushi Sushi repeat (SCR repeat)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1h2pP02
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1h2pP01
1OJWA 2JGWA 1FBRA 3MQLA 3KZJA 1H04P 4J38B 3O8EB 1OK1A 5I0QB 1G4FA 5HYUB 1G4GA 1GKNA 3ERBA 2RLQA 4AYIA 3OXUD 2W81A 2O39C 2XWBF 1GHQB 1O9AA 5HYTB 4B2RA 2B5ID 4PZ5A 4AYDA 1LY2A 4ONTD 3GOVA 2RL0A 2RKYA 1C1ZA 3IU3I 2WIIC 3ZD1A 1E88A 4ZH1D 1CKLA 3T5OA 4FXGG 2XQWC 2EHFA 3SW0X 2W80A 1QUBA 2XWJI 2JGXA 4LOSA 2EC3A 1E8BA 2UWNA 4B2SA 4JHSA 1HFHA 1TPGA 3ZRZA 5HZPB 4CSYA 1OJVA 2LOJA 1Q3XA 3TVJA 1H03P 3R62A 1OK9A 3M7PA 3OP8A 1OJYA 2MCYA 1HFIA 1VVDA 1SS2A 2CG6A 3CALA 2XRBA 3EJHA 1VVCA 2V8EA 4A5WB 1ZJKA 2IZ4A 4K12A 1H2PP 2G7IA 3OEDC 4DJZA 4MUCA 4AYMA 2CG7A 2IZ3A 1SRZA 1HCCA 2ERJA 1GPZA 4IGDA 1UOTP 4WJG2 2KMSA 1MD7A 1TPMA 4LOTA 4C16A 1E5GA 2XRDA 2KRIA 2BZMA 2CKUA 1OK2A 2JRAA 2YBYA 3ZD2A 3L89M 2A55A 5JPMG 1H2QP 2YRAA 3NFPI 1U5MA 1QO6A 2MCZA 3KXVA 1Z92B 3RJ3D 5HYPA 1PPQA 1OK3A 4KKDA 2QY0A 3IX0A 3INBC 1GKGA 1QGBA 4F4OC 1MD8A 1NWVA 2RKZA 4YNXA 5FO8C 4AYEA 3GXEA 1TPNA 2RLPA 1ELVA
chains in the Genus database with same CATH superfamily
1OJWA 2JGWA 1FBRA 3MQLA 3KZJA 1H04P 1RLHA 2Y8RA 4J38B 3O8EB 1OK1A 5I0QB 1G4FA 5HYUB 1G4GA 1GKNA 3ERBA 5DN5A 3ZLDA 2RLQA 4AYIA 3OXUD 2W81A 2O39C 2XWBF 3ZLEA 1GHQB 1O9AA 5HYTB 2I2LA 4B2RA 2B5ID 4PZ5A 4AYDA 1LY2A 4ONTD 3GOVA 2RL0A 2RKYA 1C1ZA 3IU3I 2WIIC 3ZD1A 1E88A 4ZH1D 3FGTA 1CKLA 3T5OA 4FXGG 2XQWC 2EHFA 3SW0X 2W80A 1QUBA 4YIZA 2XWJI 2JGXA 4LOSA 2EC3A 1E8BA 2UWNA 4B2SA 4JHSA 1HFHA 1TPGA 3ZRZA 5HZPB 4CSYA 1OJVA 2LOJA 1Q3XA 3TVJA 1H03P 3R62A 1OK9A 3M7PA 3OP8A 1OJYA 2MCYA 1HFIA 2Y8TA 1VVDA 1SS2A 2CG6A 3CALA 2XRBA 3EJHA 1VVCA 2V8EA 4A5WB 1ZJKA 2IZ4A 3CI0J 4K12A 3WSXA 1H2PP 2G7IA 3OEDC 4DJZA 2X2ZA 3VWOA 4MUCA 4AYMA 2CG7A 2ZYCA 3FGRA 2IZ3A 1SRZA 1HCCA 4APLA 3NJAA 4N7EA 2ERJA 1GPZA 4IGDA 1UOTP 4WJG2 2KMSA 3WSYA 1MD7A 1TPMA 4LOTA 4C16A 1E5GA 2XRDA 2KRIA 2BZMA 4PO7A 4BWCA 5DN4A 2CKUA 1OK2A 2JRAA 2YBYA 3K3TA 3ZD2A 3L89M 2A55A 5JPMG 1H2QP 2Y8SA 3F6KA 2YRAA 3NFPI 1U5MA 1QO6A 2MCZA 3KXVA 1Z92B 3RJ3D 5HYPA 1PPQA 1OK3A 4KKDA 2QY0A 3IX0A 3INBC 1GKGA 1QGBA 4F4OC 1MD8A 1NWVA 2RKZA 4YNXA 5FO8C 4AYEA 3GXEA 1TPNA 2RLPA 1ELVA 4MSLA
chains in the Genus database with same CATH topology
1OJWA 2JGWA 1FBRA 3MQLA 3KZJA 1H04P 4J38B 3O8EB 1OK1A 5I0QB 1G4FA 5HYUB 1G4GA 1GKNA 3ERBA 2RLQA 4AYIA 3OXUD 2W81A 2O39C 2XWBF 1GHQB 1O9AA 5HYTB 4B2RA 2B5ID 4PZ5A 4AYDA 1LY2A 4ONTD 3GOVA 2RL0A 2RKYA 1C1ZA 3IU3I 2WIIC 3ZD1A 1E88A 4ZH1D 1CKLA 3T5OA 4FXGG 2XQWC 2EHFA 3SW0X 2W80A 1QUBA 2XWJI 2JGXA 4LOSA 2EC3A 1E8BA 2UWNA 4B2SA 4JHSA 1HFHA 1TPGA 3ZRZA 5HZPB 4CSYA 1OJVA 2LOJA 1Q3XA 3TVJA 1H03P 3R62A 1OK9A 3M7PA 3OP8A 1OJYA 2MCYA 1HFIA 1VVDA 1SS2A 2CG6A 3CALA 2XRBA 3EJHA 1VVCA 2V8EA 4A5WB 1ZJKA 2IZ4A 4K12A 1H2PP 2G7IA 3OEDC 4DJZA 4MUCA 4AYMA 2CG7A 2IZ3A 1SRZA 1HCCA 2ERJA 1GPZA 4IGDA 1UOTP 4WJG2 2KMSA 1MD7A 1TPMA 4LOTA 4C16A 1E5GA 2XRDA 2KRIA 2BZMA 2CKUA 1OK2A 2JRAA 2YBYA 3ZD2A 3L89M 2A55A 5JPMG 1H2QP 2YRAA 3NFPI 1U5MA 1QO6A 2MCZA 3KXVA 1Z92B 3RJ3D 5HYPA 1PPQA 1OK3A 4KKDA 2QY0A 3IX0A 3INBC 1GKGA 1QGBA 4F4OC 1MD8A 1NWVA 2RKZA 4YNXA 5FO8C 4AYEA 3GXEA 1TPNA 2RLPA 1ELVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OJW A;  2JGW A;  1FBR A;  3MQL A;  3KZJ A;  1H04 P;  4J38 B;  3O8E B;  1OK1 A;  5I0Q B;  1G4F A;  5HYU B;  1G4G A;  1GKN A;  3ERB A;  2RLQ A;  4AYI A;  3OXU D;  2W81 A;  2O39 C;  2XWB F;  1GHQ B;  1O9A A;  5HYT B;  4B2R A;  2B5I D;  4PZ5 A;  4AYD A;  1LY2 A;  4ONT D;  3GOV A;  2RL0 A;  2RKY A;  1C1Z A;  3IU3 I;  2WII C;  3ZD1 A;  1E88 A;  4ZH1 D;  1CKL A;  3T5O A;  4FXG G;  2XQW C;  2EHF A;  3SW0 X;  2W80 A;  1QUB A;  2XWJ I;  2JGX A;  4LOS A;  2EC3 A;  1E8B A;  2UWN A;  4B2S A;  4JHS A;  1HFH A;  1TPG A;  3ZRZ A;  5HZP B;  4CSY A;  1OJV A;  2LOJ A;  1Q3X A;  3TVJ A;  1H03 P;  3R62 A;  1OK9 A;  3M7P A;  3OP8 A;  1OJY A;  2MCY A;  1HFI A;  1VVD A;  1SS2 A;  2CG6 A;  3CAL A;  2XRB A;  3EJH A;  1VVC A;  2V8E A;  4A5W B;  1ZJK A;  2IZ4 A;  4K12 A;  1H2P P;  2G7I A;  3OED C;  4DJZ A;  4MUC A;  4AYM A;  2CG7 A;  2IZ3 A;  1SRZ A;  1HCC A;  2ERJ A;  1GPZ A;  4IGD A;  1UOT P;  4WJG 2;  2KMS A;  1MD7 A;  1TPM A;  4LOT A;  4C16 A;  1E5G A;  2XRD A;  2KRI A;  2BZM A;  2CKU A;  1OK2 A;  2JRA A;  2YBY A;  3ZD2 A;  3L89 M;  2A55 A;  5JPM G;  1H2Q P;  2YRA A;  3NFP I;  1U5M A;  1QO6 A;  2MCZ A;  3KXV A;  1Z92 B;  3RJ3 D;  5HYP A;  1PPQ A;  1OK3 A;  4KKD A;  2QY0 A;  3IX0 A;  3INB C;  1GKG A;  1QGB A;  4F4O C;  1MD8 A;  1NWV A;  2RKZ A;  4YNX A;  5FO8 C;  4AYE A;  3GXE A;  1TPN A;  2RLP A;  1ELV A; 
#chains in the Genus database with same CATH topology
 1OJW A;  2JGW A;  1FBR A;  3MQL A;  3KZJ A;  1H04 P;  1RLH A;  2Y8R A;  4J38 B;  3O8E B;  1OK1 A;  5I0Q B;  1G4F A;  5HYU B;  1G4G A;  1GKN A;  3ERB A;  5DN5 A;  3ZLD A;  2RLQ A;  4AYI A;  3OXU D;  2W81 A;  2O39 C;  2XWB F;  3ZLE A;  1GHQ B;  1O9A A;  5HYT B;  2I2L A;  4B2R A;  2B5I D;  4PZ5 A;  4AYD A;  1LY2 A;  4ONT D;  3GOV A;  2RL0 A;  2RKY A;  1C1Z A;  3IU3 I;  2WII C;  3ZD1 A;  1E88 A;  4ZH1 D;  3FGT A;  1CKL A;  3T5O A;  4FXG G;  2XQW C;  2EHF A;  3SW0 X;  2W80 A;  1QUB A;  4YIZ A;  2XWJ I;  2JGX A;  4LOS A;  2EC3 A;  1E8B A;  2UWN A;  4B2S A;  4JHS A;  1HFH A;  1TPG A;  3ZRZ A;  5HZP B;  4CSY A;  1OJV A;  2LOJ A;  1Q3X A;  3TVJ A;  1H03 P;  3R62 A;  1OK9 A;  3M7P A;  3OP8 A;  1OJY A;  2MCY A;  1HFI A;  2Y8T A;  1VVD A;  1SS2 A;  2CG6 A;  3CAL A;  2XRB A;  3EJH A;  1VVC A;  2V8E A;  4A5W B;  1ZJK A;  2IZ4 A;  3CI0 J;  4K12 A;  3WSX A;  1H2P P;  2G7I A;  3OED C;  4DJZ A;  2X2Z A;  3VWO A;  4MUC A;  4AYM A;  2CG7 A;  2ZYC A;  3FGR A;  2IZ3 A;  1SRZ A;  1HCC A;  4APL A;  3NJA A;  4N7E A;  2ERJ A;  1GPZ A;  4IGD A;  1UOT P;  4WJG 2;  2KMS A;  3WSY A;  1MD7 A;  1TPM A;  4LOT A;  4C16 A;  1E5G A;  2XRD A;  2KRI A;  2BZM A;  4PO7 A;  4BWC A;  5DN4 A;  2CKU A;  1OK2 A;  2JRA A;  2YBY A;  3K3T A;  3ZD2 A;  3L89 M;  2A55 A;  5JPM G;  1H2Q P;  2Y8S A;  3F6K A;  2YRA A;  3NFP I;  1U5M A;  1QO6 A;  2MCZ A;  3KXV A;  1Z92 B;  3RJ3 D;  5HYP A;  1PPQ A;  1OK3 A;  4KKD A;  2QY0 A;  3IX0 A;  3INB C;  1GKG A;  1QGB A;  4F4O C;  1MD8 A;  1NWV A;  2RKZ A;  4YNX A;  5FO8 C;  4AYE A;  3GXE A;  1TPN A;  2RLP A;  1ELV A;  4MSL A; 
#chains in the Genus database with same CATH homology
 1OJW A;  2JGW A;  1FBR A;  3MQL A;  3KZJ A;  1H04 P;  4J38 B;  3O8E B;  1OK1 A;  5I0Q B;  1G4F A;  5HYU B;  1G4G A;  1GKN A;  3ERB A;  2RLQ A;  4AYI A;  3OXU D;  2W81 A;  2O39 C;  2XWB F;  1GHQ B;  1O9A A;  5HYT B;  4B2R A;  2B5I D;  4PZ5 A;  4AYD A;  1LY2 A;  4ONT D;  3GOV A;  2RL0 A;  2RKY A;  1C1Z A;  3IU3 I;  2WII C;  3ZD1 A;  1E88 A;  4ZH1 D;  1CKL A;  3T5O A;  4FXG G;  2XQW C;  2EHF A;  3SW0 X;  2W80 A;  1QUB A;  2XWJ I;  2JGX A;  4LOS A;  2EC3 A;  1E8B A;  2UWN A;  4B2S A;  4JHS A;  1HFH A;  1TPG A;  3ZRZ A;  5HZP B;  4CSY A;  1OJV A;  2LOJ A;  1Q3X A;  3TVJ A;  1H03 P;  3R62 A;  1OK9 A;  3M7P A;  3OP8 A;  1OJY A;  2MCY A;  1HFI A;  1VVD A;  1SS2 A;  2CG6 A;  3CAL A;  2XRB A;  3EJH A;  1VVC A;  2V8E A;  4A5W B;  1ZJK A;  2IZ4 A;  4K12 A;  1H2P P;  2G7I A;  3OED C;  4DJZ A;  4MUC A;  4AYM A;  2CG7 A;  2IZ3 A;  1SRZ A;  1HCC A;  2ERJ A;  1GPZ A;  4IGD A;  1UOT P;  4WJG 2;  2KMS A;  1MD7 A;  1TPM A;  4LOT A;  4C16 A;  1E5G A;  2XRD A;  2KRI A;  2BZM A;  2CKU A;  1OK2 A;  2JRA A;  2YBY A;  3ZD2 A;  3L89 M;  2A55 A;  5JPM G;  1H2Q P;  2YRA A;  3NFP I;  1U5M A;  1QO6 A;  2MCZ A;  3KXV A;  1Z92 B;  3RJ3 D;  5HYP A;  1PPQ A;  1OK3 A;  4KKD A;  2QY0 A;  3IX0 A;  3INB C;  1GKG A;  1QGB A;  4F4O C;  1MD8 A;  1NWV A;  2RKZ A;  4YNX A;  5FO8 C;  4AYE A;  3GXE A;  1TPN A;  2RLP A;  1ELV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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