1OJY | Genus

Total Genus 40

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	40
sequence length	252
structure length	252
Chain Sequence	QDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECRG

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Regulator of complement pathway
source organism	Homo sapiens
publication title	Complement Regulation at the Molecular Level: The Structure of Decay-Accelerating Factor pubmed doi rcsb
molecule keywords	COMPLEMENT DECAY-ACCELERATING FACTOR
total genus	40
structure length	252
sequence length	252
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2003-07-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00084	Sushi	Sushi repeat (SCR repeat)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.10.70.10	Mainly Beta	Ribbon	Complement Module; domain 1	Complement Module, domain 1	1ojyA04
2.10.70.10	Mainly Beta	Ribbon	Complement Module; domain 1	Complement Module, domain 1	1ojyA03
2.10.70.10	Mainly Beta	Ribbon	Complement Module; domain 1	Complement Module, domain 1	1ojyA01
2.10.70.10	Mainly Beta	Ribbon	Complement Module; domain 1	Complement Module, domain 1	1ojyA02

5HYTB 1Q3XA 1H04P 1OJYA 4ZH1D 2JGWA 3T5OA 1HCCA 1H03P 4K12A 3ERBA 2MCYA 1MD7A 2JRAA 3EJHA 2CKUA 3RJ3D 2XWBF 2IZ4A 1VVCA 1PPQA 1SRZA 1E5GA 2XRDA 1LY2A 2EC3A 3CALA 4WJG2 2RLQA 5I0QB 4B2RA 2RKZA 3TVJA 1H2QP 1NWVA 2KMSA 2V8EA 2CG6A 1GHQB 1HFIA 2RKYA 1G4GA 2KRIA 2LOJA 1OK9A 5FO8C 3GXEA 4AYEA 4PZ5A 1QUBA 4AYDA 2G7IA 4LOTA 4A5WB 2W80A 2YRAA 3ZD2A 2EHFA 2XRBA 4F4OC 1TPGA 4LOSA 4ONTD 3MQLA 5HYUB 3OEDC 1HFHA 1C1ZA 3IU3I 1UOTP 4B2SA 1VVDA 3M7PA 5HZPB 4YNXA 3KXVA 1OJWA 1G4FA 1U5MA 3O8EB 2A55A 2QY0A 2YBYA 1TPNA 1OK1A 3SW0X 1TPMA 2UWNA 3OXUD 2BZMA 1OK2A 1QO6A 3GOVA 4FXGG 4DJZA 4KKDA 1GKGA 2IZ3A 5HYPA 3INBC 1OJVA 1OK3A 2O39C 2WIIC 2ERJA 3IX0A 4AYMA 3ZRZA 2CG7A 2RLPA 1SS2A 1ELVA 1QGBA 2W81A 3KZJA 3ZD1A 2MCZA 1MD8A 1O9AA 1GKNA 4C16A 3NFPI 4IGDA 4MUCA 2RL0A 2XWJI 4J38B 3OP8A 3R62A 4CSYA 1FBRA 1CKLA 2JGXA 2XQWC 1E88A 1GPZA 1E8BA 4JHSA 5JPMG 1ZJKA 2B5ID 4AYIA 1Z92B 3L89M 1H2PP
chains in the Genus database with same CATH superfamily

5HYTB 1Q3XA 1H04P 1OJYA 5DN5A 4ZH1D 2JGWA 3K3TA 3T5OA 1HCCA 2Y8SA 1H03P 4K12A 3ERBA 2MCYA 1MD7A 2JRAA 3EJHA 2CKUA 3RJ3D 2XWBF 2IZ4A 1VVCA 1PPQA 1SRZA 1E5GA 2XRDA 1LY2A 2EC3A 3CALA 4WJG2 2RLQA 5I0QB 4B2RA 2RKZA 3VWOA 3FGTA 3TVJA 2X2ZA 1H2QP 1NWVA 2KMSA 2V8EA 3ZLDA 2CG6A 1GHQB 1HFIA 4YIZA 2RKYA 3CI0J 1G4GA 2KRIA 2LOJA 1OK9A 5FO8C 3GXEA 3WSXA 4APLA 4AYEA 4PZ5A 1QUBA 4AYDA 2G7IA 4LOTA 4A5WB 2W80A 2YRAA 3ZD2A 2EHFA 2XRBA 4F4OC 1TPGA 4LOSA 4ONTD 3MQLA 2I2LA 5HYUB 3OEDC 1HFHA 4MSLA 1C1ZA 1RLHA 3IU3I 1UOTP 4PO7A 4B2SA 1VVDA 3M7PA 5HZPB 4YNXA 3KXVA 1OJWA 1G4FA 1U5MA 3O8EB 2A55A 2QY0A 2YBYA 1TPNA 1OK1A 3SW0X 1TPMA 2UWNA 3OXUD 2BZMA 1OK2A 1QO6A 3GOVA 4FXGG 4DJZA 4KKDA 1GKGA 2IZ3A 5HYPA 3INBC 1OJVA 1OK3A 2O39C 2WIIC 2ERJA 3IX0A 2Y8RA 4AYMA 3FGRA 3ZRZA 2CG7A 2RLPA 1SS2A 1ELVA 1QGBA 2W81A 3KZJA 3ZD1A 2MCZA 1MD8A 1O9AA 2ZYCA 1GKNA 3WSYA 4C16A 5DN4A 3NFPI 4IGDA 4MUCA 3ZLEA 2RL0A 2XWJI 3F6KA 4J38B 3OP8A 3R62A 4CSYA 1FBRA 1CKLA 2JGXA 2XQWC 1E88A 1GPZA 1E8BA 4BWCA 4JHSA 5JPMG 3NJAA 1ZJKA 2B5ID 4AYIA 1Z92B 3L89M 4N7EA 2Y8TA 1H2PP
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5HYT B;  1Q3X A;  1H04 P;  1OJY A;  4ZH1 D;  2JGW A;  3T5O A;  1HCC A;  1H03 P;  4K12 A;  3ERB A;  2MCY A;  1MD7 A;  2JRA A;  3EJH A;  2CKU A;  3RJ3 D;  2XWB F;  2IZ4 A;  1VVC A;  1PPQ A;  1SRZ A;  1E5G A;  2XRD A;  1LY2 A;  2EC3 A;  3CAL A;  4WJG 2;  2RLQ A;  5I0Q B;  4B2R A;  2RKZ A;  3TVJ A;  1H2Q P;  1NWV A;  2KMS A;  2V8E A;  2CG6 A;  1GHQ B;  1HFI A;  2RKY A;  1G4G A;  2KRI A;  2LOJ A;  1OK9 A;  5FO8 C;  3GXE A;  4AYE A;  4PZ5 A;  1QUB A;  4AYD A;  2G7I A;  4LOT A;  4A5W B;  2W80 A;  2YRA A;  3ZD2 A;  2EHF A;  2XRB A;  4F4O C;  1TPG A;  4LOS A;  4ONT D;  3MQL A;  5HYU B;  3OED C;  1HFH A;  1C1Z A;  3IU3 I;  1UOT P;  4B2S A;  1VVD A;  3M7P A;  5HZP B;  4YNX A;  3KXV A;  1OJW A;  1G4F A;  1U5M A;  3O8E B;  2A55 A;  2QY0 A;  2YBY A;  1TPN A;  1OK1 A;  3SW0 X;  1TPM A;  2UWN A;  3OXU D;  2BZM A;  1OK2 A;  1QO6 A;  3GOV A;  4FXG G;  4DJZ A;  4KKD A;  1GKG A;  2IZ3 A;  5HYP A;  3INB C;  1OJV A;  1OK3 A;  2O39 C;  2WII C;  2ERJ A;  3IX0 A;  4AYM A;  3ZRZ A;  2CG7 A;  2RLP A;  1SS2 A;  1ELV A;  1QGB A;  2W81 A;  3KZJ A;  3ZD1 A;  2MCZ A;  1MD8 A;  1O9A A;  1GKN A;  4C16 A;  3NFP I;  4IGD A;  4MUC A;  2RL0 A;  2XWJ I;  4J38 B;  3OP8 A;  3R62 A;  4CSY A;  1FBR A;  1CKL A;  2JGX A;  2XQW C;  1E88 A;  1GPZ A;  1E8B A;  4JHS A;  5JPM G;  1ZJK A;  2B5I D;  4AYI A;  1Z92 B;  3L89 M;  1H2P P; 
#chains in the Genus database with same CATH topology
 5HYT B;  1Q3X A;  1H04 P;  1OJY A;  5DN5 A;  4ZH1 D;  2JGW A;  3K3T A;  3T5O A;  1HCC A;  2Y8S A;  1H03 P;  4K12 A;  3ERB A;  2MCY A;  1MD7 A;  2JRA A;  3EJH A;  2CKU A;  3RJ3 D;  2XWB F;  2IZ4 A;  1VVC A;  1PPQ A;  1SRZ A;  1E5G A;  2XRD A;  1LY2 A;  2EC3 A;  3CAL A;  4WJG 2;  2RLQ A;  5I0Q B;  4B2R A;  2RKZ A;  3VWO A;  3FGT A;  3TVJ A;  2X2Z A;  1H2Q P;  1NWV A;  2KMS A;  2V8E A;  3ZLD A;  2CG6 A;  1GHQ B;  1HFI A;  4YIZ A;  2RKY A;  3CI0 J;  1G4G A;  2KRI A;  2LOJ A;  1OK9 A;  5FO8 C;  3GXE A;  3WSX A;  4APL A;  4AYE A;  4PZ5 A;  1QUB A;  4AYD A;  2G7I A;  4LOT A;  4A5W B;  2W80 A;  2YRA A;  3ZD2 A;  2EHF A;  2XRB A;  4F4O C;  1TPG A;  4LOS A;  4ONT D;  3MQL A;  2I2L A;  5HYU B;  3OED C;  1HFH A;  4MSL A;  1C1Z A;  1RLH A;  3IU3 I;  1UOT P;  4PO7 A;  4B2S A;  1VVD A;  3M7P A;  5HZP B;  4YNX A;  3KXV A;  1OJW A;  1G4F A;  1U5M A;  3O8E B;  2A55 A;  2QY0 A;  2YBY A;  1TPN A;  1OK1 A;  3SW0 X;  1TPM A;  2UWN A;  3OXU D;  2BZM A;  1OK2 A;  1QO6 A;  3GOV A;  4FXG G;  4DJZ A;  4KKD A;  1GKG A;  2IZ3 A;  5HYP A;  3INB C;  1OJV A;  1OK3 A;  2O39 C;  2WII C;  2ERJ A;  3IX0 A;  2Y8R A;  4AYM A;  3FGR A;  3ZRZ A;  2CG7 A;  2RLP A;  1SS2 A;  1ELV A;  1QGB A;  2W81 A;  3KZJ A;  3ZD1 A;  2MCZ A;  1MD8 A;  1O9A A;  2ZYC A;  1GKN A;  3WSY A;  4C16 A;  5DN4 A;  3NFP I;  4IGD A;  4MUC A;  3ZLE A;  2RL0 A;  2XWJ I;  3F6K A;  4J38 B;  3OP8 A;  3R62 A;  4CSY A;  1FBR A;  1CKL A;  2JGX A;  2XQW C;  1E88 A;  1GPZ A;  1E8B A;  4BWC A;  4JHS A;  5JPM G;  3NJA A;  1ZJK A;  2B5I D;  4AYI A;  1Z92 B;  3L89 M;  4N7E A;  2Y8T A;  1H2P P; 
#chains in the Genus database with same CATH homology
 5HYT B;  1Q3X A;  1H04 P;  1OJY A;  4ZH1 D;  2JGW A;  3T5O A;  1HCC A;  1H03 P;  4K12 A;  3ERB A;  2MCY A;  1MD7 A;  2JRA A;  3EJH A;  2CKU A;  3RJ3 D;  2XWB F;  2IZ4 A;  1VVC A;  1PPQ A;  1SRZ A;  1E5G A;  2XRD A;  1LY2 A;  2EC3 A;  3CAL A;  4WJG 2;  2RLQ A;  5I0Q B;  4B2R A;  2RKZ A;  3TVJ A;  1H2Q P;  1NWV A;  2KMS A;  2V8E A;  2CG6 A;  1GHQ B;  1HFI A;  2RKY A;  1G4G A;  2KRI A;  2LOJ A;  1OK9 A;  5FO8 C;  3GXE A;  4AYE A;  4PZ5 A;  1QUB A;  4AYD A;  2G7I A;  4LOT A;  4A5W B;  2W80 A;  2YRA A;  3ZD2 A;  2EHF A;  2XRB A;  4F4O C;  1TPG A;  4LOS A;  4ONT D;  3MQL A;  5HYU B;  3OED C;  1HFH A;  1C1Z A;  3IU3 I;  1UOT P;  4B2S A;  1VVD A;  3M7P A;  5HZP B;  4YNX A;  3KXV A;  1OJW A;  1G4F A;  1U5M A;  3O8E B;  2A55 A;  2QY0 A;  2YBY A;  1TPN A;  1OK1 A;  3SW0 X;  1TPM A;  2UWN A;  3OXU D;  2BZM A;  1OK2 A;  1QO6 A;  3GOV A;  4FXG G;  4DJZ A;  4KKD A;  1GKG A;  2IZ3 A;  5HYP A;  3INB C;  1OJV A;  1OK3 A;  2O39 C;  2WII C;  2ERJ A;  3IX0 A;  4AYM A;  3ZRZ A;  2CG7 A;  2RLP A;  1SS2 A;  1ELV A;  1QGB A;  2W81 A;  3KZJ A;  3ZD1 A;  2MCZ A;  1MD8 A;  1O9A A;  1GKN A;  4C16 A;  3NFP I;  4IGD A;  4MUC A;  2RL0 A;  2XWJ I;  4J38 B;  3OP8 A;  3R62 A;  4CSY A;  1FBR A;  1CKL A;  2JGX A;  2XQW C;  1E88 A;  1GPZ A;  1E8B A;  4JHS A;  5JPM G;  1ZJK A;  2B5I D;  4AYI A;  1Z92 B;  3L89 M;  1H2P P;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1OJYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations