1OK3A

Decay accelerating factor (cd55): the structure of an intact human complement regulator.
Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
254
structure length
254
Chain Sequence
MQDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECRGC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS3 (23-24)O1 (4-49)TII5 (50-53)S1 (3-4)S7 (54-55)TII1 (10-13)S4 (27-33)O2 (33-62)TI'1 (17-20)S6 (46-50)TII2 (24-27)S8 (62-64)TII3 (34-37)S5 (37-39)O3 (66-113)S13 (118-119)S10 (91-97)TI1 (72-75)3H1 (81-83)S9 (75-77)TVIa1 (78-81)S12 (110-114)TII6 (88-91)TIV2 (98-101)S14 (126-128)O4 (97-126)TVIII1 (124-127)TII8 (149-152)TII'1 (175-178)TIV3 (144-147)O5 (131-172)S19 (178-181)TII7 (137-140)S16 (152-158)S18 (169-175)S20 (187-190)O6 (158-188)TII9 (159-162)S17 (162-165)S21 (192-193)TVIII2 (208-211)S25 (232-238)S26 (241-244)S24 (215-221)TII10 (199-202)TIV4 (204-207)S23 (211-212)TII11 (212-215)TIV5 (230-233)O8 (221-251)TII12 (222-225)O7 (193-235)TIV6 (237-240)S11 (101-103)TI2 (104-107)TI3 (114-117)S15 (140-143)S22 (202-204)S2 (13-15)Updating...
connected with : NaN
molecule tags Regulator of complement pathway
source organism Homo sapiens
publication title Complement Regulation at the Molecular Level: The Structure of Decay-Accelerating Factor
pubmed doi rcsb
molecule keywords COMPLEMENT DECAY-ACCELERATING FACTOR
total genus 36
structure length 254
sequence length 254
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-07-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00084 Sushi Sushi repeat (SCR repeat)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1ok3A04
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1ok3A03
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1ok3A01
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1ok3A02
2G7IA 1O9AA 2EC3A 4B2RA 3INBC 4J38B 2CG6A 4FXGG 1E5GA 3M7PA 4MUCA 1C1ZA 1HFHA 2XRDA 4K12A 2CKUA 1H03P 4F4OC 3KZJA 1H04P 1VVCA 4JHSA 3ZD1A 2O39C 2XWBF 2RKYA 2YRAA 2JGWA 3OEDC 1Q3XA 1MD7A 1OK3A 1ELVA 2YBYA 2RLPA 1LY2A 4LOTA 1E88A 5JPMG 1CKLA 4LOSA 1TPMA 4ONTD 2XWJI 3IU3I 1QO6A 2LOJA 2CG7A 2XQWC 1G4FA 1PPQA 1OJVA 1QUBA 1MD8A 1OJWA 3EJHA 1SS2A 1GHQB 3L89M 1UOTP 4DJZA 2RKZA 2IZ4A 1H2QP 3R62A 1TPGA 1E8BA 4IGDA 2A55A 2QY0A 4WJG2 3KXVA 5HYPA 1U5MA 4AYIA 3TVJA 2RLQA 4CSYA 1OJYA 2B5ID 1ZJKA 2W81A 3ERBA 3CALA 1VVDA 4B2SA 2KRIA 3ZD2A 2JRAA 2JGXA 3T5OA 5HYUB 1OK1A 1H2PP 4AYEA 1OK9A 3O8EB 3OXUD 2EHFA 4KKDA 3GXEA 1GKGA 1SRZA 5FO8C 3IX0A 2V8EA 3GOVA 3NFPI 1FBRA 2XRBA 4C16A 2RL0A 4YNXA 1GKNA 2UWNA 2ERJA 3OP8A 3SW0X 2BZMA 1NWVA 4PZ5A 4AYDA 4A5WB 1G4GA 2MCZA 2W80A 4AYMA 4ZH1D 3RJ3D 1TPNA 1HCCA 5HYTB 5I0QB 5HZPB 1GPZA 2IZ3A 1Z92B 1OK2A 1QGBA 2WIIC 2MCYA 2KMSA 3MQLA 3ZRZA 1HFIA
chains in the Genus database with same CATH superfamily
2G7IA 1O9AA 2EC3A 4B2RA 3INBC 4J38B 2CG6A 3ZLDA 3NJAA 4FXGG 1E5GA 3M7PA 4MUCA 1C1ZA 1HFHA 2XRDA 4K12A 2CKUA 1H03P 4F4OC 3KZJA 1H04P 1VVCA 3FGTA 4JHSA 3ZD1A 2O39C 2XWBF 2RKYA 2YRAA 3K3TA 4PO7A 1RLHA 2JGWA 3OEDC 1Q3XA 5DN5A 3CI0J 1MD7A 1OK3A 1ELVA 2YBYA 2RLPA 1LY2A 4LOTA 1E88A 5JPMG 5DN4A 1CKLA 4LOSA 1TPMA 4ONTD 3WSYA 2XWJI 3IU3I 4MSLA 1QO6A 2LOJA 2CG7A 2XQWC 1G4FA 3WSXA 4N7EA 1PPQA 2X2ZA 1OJVA 1QUBA 2Y8SA 1MD8A 4BWCA 1OJWA 3EJHA 3F6KA 1SS2A 1GHQB 3L89M 1UOTP 4DJZA 2RKZA 2IZ4A 1H2QP 3R62A 1TPGA 1E8BA 4IGDA 2A55A 2QY0A 4WJG2 3KXVA 5HYPA 1U5MA 4AYIA 3TVJA 3FGRA 2RLQA 4CSYA 1OJYA 2B5ID 1ZJKA 2W81A 3ERBA 3CALA 1VVDA 4B2SA 4APLA 2KRIA 3ZD2A 4YIZA 2JRAA 2JGXA 3T5OA 5HYUB 1OK1A 1H2PP 4AYEA 3ZLEA 1OK9A 3O8EB 3OXUD 2EHFA 4KKDA 3GXEA 1GKGA 1SRZA 5FO8C 3IX0A 2V8EA 3GOVA 3NFPI 1FBRA 2XRBA 4C16A 2RL0A 2Y8TA 4YNXA 1GKNA 3VWOA 2UWNA 2ERJA 3OP8A 3SW0X 2BZMA 1NWVA 4PZ5A 4AYDA 4A5WB 1G4GA 2MCZA 2W80A 2Y8RA 4AYMA 4ZH1D 2ZYCA 3RJ3D 1TPNA 1HCCA 5HYTB 5I0QB 5HZPB 1GPZA 2IZ3A 1Z92B 1OK2A 2I2LA 1QGBA 2WIIC 2MCYA 2KMSA 3MQLA 3ZRZA 1HFIA
chains in the Genus database with same CATH topology
2G7IA 1O9AA 2EC3A 4B2RA 3INBC 4J38B 2CG6A 4FXGG 1E5GA 3M7PA 4MUCA 1C1ZA 1HFHA 2XRDA 4K12A 2CKUA 1H03P 4F4OC 3KZJA 1H04P 1VVCA 4JHSA 3ZD1A 2O39C 2XWBF 2RKYA 2YRAA 2JGWA 3OEDC 1Q3XA 1MD7A 1OK3A 1ELVA 2YBYA 2RLPA 1LY2A 4LOTA 1E88A 5JPMG 1CKLA 4LOSA 1TPMA 4ONTD 2XWJI 3IU3I 1QO6A 2LOJA 2CG7A 2XQWC 1G4FA 1PPQA 1OJVA 1QUBA 1MD8A 1OJWA 3EJHA 1SS2A 1GHQB 3L89M 1UOTP 4DJZA 2RKZA 2IZ4A 1H2QP 3R62A 1TPGA 1E8BA 4IGDA 2A55A 2QY0A 4WJG2 3KXVA 5HYPA 1U5MA 4AYIA 3TVJA 2RLQA 4CSYA 1OJYA 2B5ID 1ZJKA 2W81A 3ERBA 3CALA 1VVDA 4B2SA 2KRIA 3ZD2A 2JRAA 2JGXA 3T5OA 5HYUB 1OK1A 1H2PP 4AYEA 1OK9A 3O8EB 3OXUD 2EHFA 4KKDA 3GXEA 1GKGA 1SRZA 5FO8C 3IX0A 2V8EA 3GOVA 3NFPI 1FBRA 2XRBA 4C16A 2RL0A 4YNXA 1GKNA 2UWNA 2ERJA 3OP8A 3SW0X 2BZMA 1NWVA 4PZ5A 4AYDA 4A5WB 1G4GA 2MCZA 2W80A 4AYMA 4ZH1D 3RJ3D 1TPNA 1HCCA 5HYTB 5I0QB 5HZPB 1GPZA 2IZ3A 1Z92B 1OK2A 1QGBA 2WIIC 2MCYA 2KMSA 3MQLA 3ZRZA 1HFIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2G7I A;  1O9A A;  2EC3 A;  4B2R A;  3INB C;  4J38 B;  2CG6 A;  4FXG G;  1E5G A;  3M7P A;  4MUC A;  1C1Z A;  1HFH A;  2XRD A;  4K12 A;  2CKU A;  1H03 P;  4F4O C;  3KZJ A;  1H04 P;  1VVC A;  4JHS A;  3ZD1 A;  2O39 C;  2XWB F;  2RKY A;  2YRA A;  2JGW A;  3OED C;  1Q3X A;  1MD7 A;  1OK3 A;  1ELV A;  2YBY A;  2RLP A;  1LY2 A;  4LOT A;  1E88 A;  5JPM G;  1CKL A;  4LOS A;  1TPM A;  4ONT D;  2XWJ I;  3IU3 I;  1QO6 A;  2LOJ A;  2CG7 A;  2XQW C;  1G4F A;  1PPQ A;  1OJV A;  1QUB A;  1MD8 A;  1OJW A;  3EJH A;  1SS2 A;  1GHQ B;  3L89 M;  1UOT P;  4DJZ A;  2RKZ A;  2IZ4 A;  1H2Q P;  3R62 A;  1TPG A;  1E8B A;  4IGD A;  2A55 A;  2QY0 A;  4WJG 2;  3KXV A;  5HYP A;  1U5M A;  4AYI A;  3TVJ A;  2RLQ A;  4CSY A;  1OJY A;  2B5I D;  1ZJK A;  2W81 A;  3ERB A;  3CAL A;  1VVD A;  4B2S A;  2KRI A;  3ZD2 A;  2JRA A;  2JGX A;  3T5O A;  5HYU B;  1OK1 A;  1H2P P;  4AYE A;  1OK9 A;  3O8E B;  3OXU D;  2EHF A;  4KKD A;  3GXE A;  1GKG A;  1SRZ A;  5FO8 C;  3IX0 A;  2V8E A;  3GOV A;  3NFP I;  1FBR A;  2XRB A;  4C16 A;  2RL0 A;  4YNX A;  1GKN A;  2UWN A;  2ERJ A;  3OP8 A;  3SW0 X;  2BZM A;  1NWV A;  4PZ5 A;  4AYD A;  4A5W B;  1G4G A;  2MCZ A;  2W80 A;  4AYM A;  4ZH1 D;  3RJ3 D;  1TPN A;  1HCC A;  5HYT B;  5I0Q B;  5HZP B;  1GPZ A;  2IZ3 A;  1Z92 B;  1OK2 A;  1QGB A;  2WII C;  2MCY A;  2KMS A;  3MQL A;  3ZRZ A;  1HFI A; 
#chains in the Genus database with same CATH topology
 2G7I A;  1O9A A;  2EC3 A;  4B2R A;  3INB C;  4J38 B;  2CG6 A;  3ZLD A;  3NJA A;  4FXG G;  1E5G A;  3M7P A;  4MUC A;  1C1Z A;  1HFH A;  2XRD A;  4K12 A;  2CKU A;  1H03 P;  4F4O C;  3KZJ A;  1H04 P;  1VVC A;  3FGT A;  4JHS A;  3ZD1 A;  2O39 C;  2XWB F;  2RKY A;  2YRA A;  3K3T A;  4PO7 A;  1RLH A;  2JGW A;  3OED C;  1Q3X A;  5DN5 A;  3CI0 J;  1MD7 A;  1OK3 A;  1ELV A;  2YBY A;  2RLP A;  1LY2 A;  4LOT A;  1E88 A;  5JPM G;  5DN4 A;  1CKL A;  4LOS A;  1TPM A;  4ONT D;  3WSY A;  2XWJ I;  3IU3 I;  4MSL A;  1QO6 A;  2LOJ A;  2CG7 A;  2XQW C;  1G4F A;  3WSX A;  4N7E A;  1PPQ A;  2X2Z A;  1OJV A;  1QUB A;  2Y8S A;  1MD8 A;  4BWC A;  1OJW A;  3EJH A;  3F6K A;  1SS2 A;  1GHQ B;  3L89 M;  1UOT P;  4DJZ A;  2RKZ A;  2IZ4 A;  1H2Q P;  3R62 A;  1TPG A;  1E8B A;  4IGD A;  2A55 A;  2QY0 A;  4WJG 2;  3KXV A;  5HYP A;  1U5M A;  4AYI A;  3TVJ A;  3FGR A;  2RLQ A;  4CSY A;  1OJY A;  2B5I D;  1ZJK A;  2W81 A;  3ERB A;  3CAL A;  1VVD A;  4B2S A;  4APL A;  2KRI A;  3ZD2 A;  4YIZ A;  2JRA A;  2JGX A;  3T5O A;  5HYU B;  1OK1 A;  1H2P P;  4AYE A;  3ZLE A;  1OK9 A;  3O8E B;  3OXU D;  2EHF A;  4KKD A;  3GXE A;  1GKG A;  1SRZ A;  5FO8 C;  3IX0 A;  2V8E A;  3GOV A;  3NFP I;  1FBR A;  2XRB A;  4C16 A;  2RL0 A;  2Y8T A;  4YNX A;  1GKN A;  3VWO A;  2UWN A;  2ERJ A;  3OP8 A;  3SW0 X;  2BZM A;  1NWV A;  4PZ5 A;  4AYD A;  4A5W B;  1G4G A;  2MCZ A;  2W80 A;  2Y8R A;  4AYM A;  4ZH1 D;  2ZYC A;  3RJ3 D;  1TPN A;  1HCC A;  5HYT B;  5I0Q B;  5HZP B;  1GPZ A;  2IZ3 A;  1Z92 B;  1OK2 A;  2I2L A;  1QGB A;  2WII C;  2MCY A;  2KMS A;  3MQL A;  3ZRZ A;  1HFI A; 
#chains in the Genus database with same CATH homology
 2G7I A;  1O9A A;  2EC3 A;  4B2R A;  3INB C;  4J38 B;  2CG6 A;  4FXG G;  1E5G A;  3M7P A;  4MUC A;  1C1Z A;  1HFH A;  2XRD A;  4K12 A;  2CKU A;  1H03 P;  4F4O C;  3KZJ A;  1H04 P;  1VVC A;  4JHS A;  3ZD1 A;  2O39 C;  2XWB F;  2RKY A;  2YRA A;  2JGW A;  3OED C;  1Q3X A;  1MD7 A;  1OK3 A;  1ELV A;  2YBY A;  2RLP A;  1LY2 A;  4LOT A;  1E88 A;  5JPM G;  1CKL A;  4LOS A;  1TPM A;  4ONT D;  2XWJ I;  3IU3 I;  1QO6 A;  2LOJ A;  2CG7 A;  2XQW C;  1G4F A;  1PPQ A;  1OJV A;  1QUB A;  1MD8 A;  1OJW A;  3EJH A;  1SS2 A;  1GHQ B;  3L89 M;  1UOT P;  4DJZ A;  2RKZ A;  2IZ4 A;  1H2Q P;  3R62 A;  1TPG A;  1E8B A;  4IGD A;  2A55 A;  2QY0 A;  4WJG 2;  3KXV A;  5HYP A;  1U5M A;  4AYI A;  3TVJ A;  2RLQ A;  4CSY A;  1OJY A;  2B5I D;  1ZJK A;  2W81 A;  3ERB A;  3CAL A;  1VVD A;  4B2S A;  2KRI A;  3ZD2 A;  2JRA A;  2JGX A;  3T5O A;  5HYU B;  1OK1 A;  1H2P P;  4AYE A;  1OK9 A;  3O8E B;  3OXU D;  2EHF A;  4KKD A;  3GXE A;  1GKG A;  1SRZ A;  5FO8 C;  3IX0 A;  2V8E A;  3GOV A;  3NFP I;  1FBR A;  2XRB A;  4C16 A;  2RL0 A;  4YNX A;  1GKN A;  2UWN A;  2ERJ A;  3OP8 A;  3SW0 X;  2BZM A;  1NWV A;  4PZ5 A;  4AYD A;  4A5W B;  1G4G A;  2MCZ A;  2W80 A;  4AYM A;  4ZH1 D;  3RJ3 D;  1TPN A;  1HCC A;  5HYT B;  5I0Q B;  5HZP B;  1GPZ A;  2IZ3 A;  1Z92 B;  1OK2 A;  1QGB A;  2WII C;  2MCY A;  2KMS A;  3MQL A;  3ZRZ A;  1HFI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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